Wall clock time and date at job start Tue Mar 31 2020 19:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29950 * 125.30620 * 2 1 4 4 O 1.41880 * 107.41557 * 180.02562 * 3 2 1 5 5 N 1.41875 * 106.38813 * 359.97438 * 4 3 2 6 6 C 1.29954 * 107.41212 * 359.97438 * 5 4 3 7 7 C 1.50704 * 125.30131 * 179.73413 * 6 5 4 8 8 C 1.50704 * 109.46877 * 90.03008 * 7 6 5 9 9 O 1.21282 * 120.00080 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00242 * 179.97438 * 8 7 6 11 11 C 1.46938 * 120.70040 * 0.02562 * 10 8 7 12 12 C 1.53183 * 108.92931 * 125.81563 * 11 10 8 13 13 C 1.53158 * 109.28038 * 55.20675 * 12 11 10 14 14 C 1.52235 * 109.65413 * 299.83429 * 13 12 11 15 15 C 1.54501 * 110.24931 * 297.10788 * 14 13 12 16 16 C 1.55025 * 101.52302 * 276.20566 * 15 14 13 17 17 N 1.47488 * 104.90103 * 323.64817 * 16 15 14 18 18 C 1.36941 * 125.66175 * 204.01440 * 17 16 15 19 19 H 1.07997 * 120.00227 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99637 * 359.97438 * 18 17 16 21 21 N 1.31617 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46841 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47103 * 119.99645 * 22 20 18 25 25 H 1.48501 * 109.47102 * 239.99693 * 22 20 18 26 26 C 1.47192 * 108.67807 * 24.00921 * 17 16 15 27 27 C 1.47076 * 120.70452 * 179.72158 * 10 8 7 28 28 H 1.09004 * 109.47294 * 269.98320 * 1 2 3 29 29 H 1.08996 * 109.47139 * 29.97502 * 1 2 3 30 30 H 1.08991 * 109.47313 * 149.98155 * 1 2 3 31 31 H 1.09003 * 109.47354 * 210.02739 * 7 6 5 32 32 H 1.08997 * 109.47320 * 330.03132 * 7 6 5 33 33 H 1.08998 * 109.55861 * 245.64420 * 11 10 8 34 34 H 1.09005 * 109.56277 * 5.86910 * 11 10 8 35 35 H 1.08998 * 109.50412 * 175.15427 * 12 11 10 36 36 H 1.09005 * 109.50068 * 295.22989 * 12 11 10 37 37 H 1.09003 * 109.44132 * 59.89445 * 13 12 11 38 38 H 1.09000 * 109.44160 * 179.81598 * 13 12 11 39 39 H 1.08995 * 111.01421 * 34.26243 * 15 14 13 40 40 H 1.09003 * 111.01726 * 158.14554 * 15 14 13 41 41 H 1.08999 * 110.35088 * 204.79018 * 16 15 14 42 42 H 1.08997 * 110.44308 * 82.54378 * 16 15 14 43 43 H 0.97003 * 120.00242 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.91143 * 239.11788 * 26 17 16 45 45 H 1.09002 * 110.06651 * 117.93795 * 26 17 16 46 46 H 1.09003 * 109.58220 * 352.29147 * 27 10 8 47 47 H 1.08995 * 109.58110 * 112.69458 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5710 -0.7936 -0.0003 6 6 2.3212 -1.1499 0.0009 7 6 1.8208 -2.5714 -0.0041 8 6 1.6565 -3.0511 1.4151 9 8 1.9194 -2.3113 2.3395 10 7 1.2165 -4.3018 1.6571 11 6 0.8930 -5.2108 0.5488 12 6 1.6807 -6.5124 0.7276 13 6 1.3833 -7.0975 2.1115 14 6 1.7996 -6.1043 3.1875 15 6 3.3241 -5.8603 3.1290 16 6 3.8610 -7.0553 3.9578 17 7 2.8699 -7.2469 5.0330 18 6 3.1101 -7.8395 6.2440 19 1 2.3136 -7.9320 6.9675 20 6 4.3775 -8.3214 6.5416 21 7 5.3481 -8.2091 5.6597 22 14 4.7051 -9.1304 8.1931 23 1 3.4578 -9.1331 8.9990 24 1 5.1592 -10.5278 7.9784 25 1 5.7587 -8.3728 8.9150 26 6 1.5796 -6.6954 4.5886 27 6 1.0563 -4.7879 3.0359 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5141 31 1 0.8598 -2.6165 -0.5164 32 1 2.5388 -3.2075 -0.5218 33 1 -0.1753 -5.4271 0.5543 34 1 1.1661 -4.7441 -0.3976 35 1 1.3836 -7.2260 -0.0408 36 1 2.7476 -6.3069 0.6405 37 1 0.3157 -7.2999 2.1980 38 1 1.9400 -8.0256 2.2402 39 1 3.6875 -5.9021 2.1023 40 1 3.5863 -4.9111 3.5965 41 1 4.8370 -6.8157 4.3800 42 1 3.9259 -7.9497 3.3383 43 1 6.2336 -8.5462 5.8675 44 1 1.2541 -5.9133 5.2745 45 1 0.8303 -7.4858 4.5445 46 1 1.4669 -4.0560 3.7314 47 1 -0.0016 -4.9428 3.2480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054222432.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:55 Heat of formation + Delta-G solvation = 59.448467 kcal Electronic energy + Delta-G solvation = -29750.301743 eV Core-core repulsion = 25744.144550 eV Total energy + Delta-G solvation = -4006.157193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.63459 -41.56959 -39.83571 -37.31858 -35.67083 -34.85225 -34.42984 -33.10614 -32.02795 -30.75005 -30.16713 -29.59361 -27.37190 -26.44454 -25.33277 -23.64444 -23.27892 -22.12005 -21.90191 -20.42259 -19.48654 -18.66174 -18.41542 -17.93635 -17.17809 -16.94845 -16.62230 -16.52375 -16.33103 -15.72420 -15.31146 -15.21159 -14.83738 -14.71625 -14.69515 -14.31452 -14.25713 -14.05102 -13.81662 -13.73529 -13.47095 -13.16412 -13.09681 -12.91673 -12.85207 -12.83185 -12.61637 -12.25609 -12.17428 -12.10758 -12.04079 -11.89628 -11.67993 -11.66965 -11.46128 -11.35151 -11.09865 -10.82230 -10.76709 -9.58009 -8.89710 -7.79426 -5.23438 -0.54781 0.88801 1.43286 1.44978 1.47751 1.53377 1.55120 1.96200 2.13124 2.47610 2.80568 3.29999 3.39521 3.57145 3.67382 3.68688 3.87681 3.90024 3.96536 4.15355 4.21437 4.29569 4.33677 4.41920 4.43493 4.56191 4.61125 4.66033 4.68669 4.75615 4.76663 4.83711 4.92661 4.93048 4.99527 5.02518 5.12991 5.20467 5.26159 5.43134 5.52282 5.54916 5.56298 5.64052 5.80626 5.83454 6.28162 6.41233 7.08608 7.09976 7.77112 8.41349 9.22662 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.002775 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.127448 B =10086.469619 C =10753.358766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.310 5.310 4 O -0.022 6.022 5 N -0.297 5.297 6 C 0.104 3.896 7 C -0.074 4.074 8 C 0.517 3.483 9 O -0.590 6.590 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.135 4.135 13 C -0.097 4.097 14 C -0.069 4.069 15 C -0.114 4.114 16 C 0.161 3.839 17 N -0.626 5.626 18 C -0.236 4.236 19 H 0.082 0.918 20 C -0.071 4.071 21 N -0.951 5.951 22 Si 0.980 3.020 23 H -0.265 1.265 24 H -0.290 1.290 25 H -0.295 1.295 26 C 0.142 3.858 27 C 0.139 3.861 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.190 0.810 32 H 0.149 0.851 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.058 0.942 42 H -0.008 1.008 43 H 0.245 0.755 44 H 0.018 0.982 45 H 0.034 0.966 46 H 0.057 0.943 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 8.672 -20.649 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 N -0.060 5.060 4 O -0.154 6.154 5 N -0.043 5.043 6 C -0.081 4.081 7 C -0.114 4.114 8 C 0.305 3.695 9 O -0.470 6.470 10 N -0.327 5.327 11 C -0.020 4.020 12 C -0.173 4.173 13 C -0.135 4.135 14 C -0.070 4.070 15 C -0.152 4.152 16 C 0.036 3.964 17 N -0.352 5.352 18 C -0.365 4.365 19 H 0.099 0.901 20 C -0.263 4.263 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.222 1.222 26 C 0.017 3.983 27 C 0.016 3.984 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.208 0.792 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.010 0.990 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.713 9.825 -20.067 27.903 hybrid contribution 0.832 -0.906 1.693 2.093 sum -15.881 8.919 -18.374 25.872 Atomic orbital electron populations 1.20939 0.80384 1.07864 1.05992 1.25345 1.02306 0.87732 0.92945 1.79865 0.88615 1.21128 1.16372 1.93362 1.21900 1.14050 1.86126 1.79895 1.19624 0.91120 1.13626 1.24465 0.89290 0.99598 0.94718 1.20719 1.08501 0.86841 0.95297 1.20612 0.76165 0.81744 0.91015 1.90783 1.52055 1.56341 1.47847 1.48125 1.64512 1.12266 1.07823 1.22254 1.01653 0.89054 0.89039 1.22015 1.00707 0.98004 0.96525 1.21328 1.01768 0.96557 0.93848 1.21182 0.94803 0.95882 0.95149 1.22785 0.95904 0.97082 0.99477 1.21614 0.94424 0.92629 0.87700 1.44842 1.06973 1.68931 1.14453 1.19512 0.95443 1.29561 0.91997 0.90058 1.25659 0.95921 1.02780 1.01952 1.70101 1.01791 1.52732 1.35446 0.84979 0.77815 0.77312 0.79063 1.18892 1.21694 1.22207 1.21387 0.88163 0.95312 0.93483 1.21175 1.00498 0.93427 0.83302 0.88104 0.87763 0.84610 0.79246 0.83378 0.87496 0.85689 0.87481 0.92685 0.89627 0.94064 0.90296 0.95047 0.92390 0.99035 0.94512 0.96362 0.94780 0.92440 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.23 71.23 0.73 0.17 16 2 C 0.10 1.79 7.19 43.49 0.31 2.10 16 3 N -0.31 -8.03 12.98 -47.16 -0.61 -8.64 16 4 O -0.02 -0.68 13.71 70.16 0.96 0.28 16 5 N -0.30 -8.46 12.98 -47.15 -0.61 -9.07 16 6 C 0.10 2.03 5.68 43.49 0.25 2.28 16 7 C -0.07 -0.74 4.39 29.10 0.13 -0.61 16 8 C 0.52 10.48 7.70 87.66 0.67 11.16 16 9 O -0.59 -19.26 15.46 -3.04 -0.05 -19.31 16 10 N -0.60 -10.40 2.83 -820.89 -2.33 -12.72 16 11 C 0.10 0.76 6.33 86.36 0.55 1.30 16 12 C -0.13 -1.89 5.89 30.71 0.18 -1.71 16 13 C -0.10 -2.27 4.55 30.39 0.14 -2.13 16 14 C -0.07 -2.12 0.55 -52.06 -0.03 -2.15 16 15 C -0.11 -4.44 5.72 31.80 0.18 -4.26 16 16 C 0.16 8.23 5.57 86.88 0.48 8.71 16 17 N -0.63 -32.91 3.40 -692.50 -2.36 -35.27 16 18 C -0.24 -13.56 10.28 84.03 0.86 -12.70 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 21 N -0.95 -58.61 10.09 21.65 0.22 -58.39 16 22 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 26 C 0.14 5.72 6.43 86.46 0.56 6.28 16 27 C 0.14 3.51 4.94 85.92 0.42 3.94 16 28 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.14 -0.38 7.13 -2.39 -0.02 -0.40 16 31 H 0.19 -0.53 6.92 -2.39 -0.02 -0.55 16 32 H 0.15 0.95 7.71 -2.39 -0.02 0.93 16 33 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.13 -0.07 5.94 -2.38 -0.01 -0.08 16 35 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 1.00 6.23 -2.38 -0.01 0.99 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.25 7.49 -2.39 -0.02 1.23 16 39 H 0.08 2.70 6.00 -2.39 -0.01 2.68 16 40 H 0.03 1.37 7.89 -2.39 -0.02 1.35 16 41 H 0.06 3.48 5.88 -2.39 -0.01 3.47 16 42 H -0.01 -0.44 7.76 -2.39 -0.02 -0.46 16 43 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.02 0.75 7.80 -2.39 -0.02 0.73 16 45 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 46 H 0.06 1.91 6.85 -2.39 -0.02 1.90 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -90.26 369.68 4.15 -86.11 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 0.99 Total: -0.61 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 5.90 Total: 8.70 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -5.69 Total: -124.10 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.92 Total: -19.03 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -90.26 4.15 -86.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054222432.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.557 kcal (2) G-P(sol) polarization free energy of solvation -90.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds