Wall clock time and date at job start Tue Mar 31 2020 18:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41285 * 126.14914 * 2 1 4 4 C 1.47722 * 125.95251 * 0.23965 * 3 2 1 5 5 O 1.21571 * 119.99935 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00397 * 179.97438 * 4 3 2 7 7 C 1.47424 * 125.65210 * 179.70981 * 6 4 3 8 8 C 1.55127 * 104.72188 * 155.81651 * 7 6 4 9 9 H 1.08995 * 111.19511 * 279.19621 * 8 7 6 10 10 C 1.53001 * 110.90300 * 155.27508 * 8 7 6 11 11 C 1.55163 * 101.48288 * 37.30068 * 8 7 6 12 12 H 1.08998 * 110.71728 * 205.96696 * 11 8 7 13 13 N 1.46501 * 110.72057 * 82.69488 * 11 8 7 14 14 C 1.36931 * 119.99948 * 160.02220 * 13 11 8 15 15 H 1.08005 * 120.00027 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00034 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00201 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47300 * 89.99972 * 18 16 14 20 20 H 1.48498 * 109.47398 * 209.99822 * 18 16 14 21 21 H 1.48501 * 109.47170 * 329.99752 * 18 16 14 22 22 C 1.47023 * 125.64251 * 0.02562 * 6 4 3 23 23 N 1.32124 * 108.09813 * 180.23205 * 3 2 1 24 24 N 1.39394 * 108.10481 * 359.95527 * 23 3 2 25 25 C 1.34864 * 126.14344 * 180.31175 * 2 1 3 26 26 O 1.36028 * 128.63697 * 359.94128 * 25 2 1 27 27 C 1.43521 * 114.97446 * 164.33243 * 26 25 2 28 28 C 1.53235 * 109.28176 * 47.19997 * 27 26 25 29 29 C 1.46728 * 128.21004 * 180.21348 * 24 23 3 30 30 H 1.09005 * 109.46946 * 269.68780 * 1 2 3 31 31 H 1.09007 * 109.46713 * 29.68362 * 1 2 3 32 32 H 1.08993 * 109.47372 * 149.68576 * 1 2 3 33 33 H 1.08999 * 110.36518 * 274.75241 * 7 6 4 34 34 H 1.09003 * 110.36160 * 37.07294 * 7 6 4 35 35 H 1.08997 * 109.47366 * 307.98089 * 10 8 7 36 36 H 1.09003 * 109.46919 * 67.97967 * 10 8 7 37 37 H 1.09001 * 109.46965 * 187.97447 * 10 8 7 38 38 H 0.97003 * 119.99785 * 340.01928 * 13 11 8 39 39 H 0.96999 * 120.00003 * 180.02562 * 17 16 14 40 40 H 1.08994 * 109.88620 * 300.44005 * 22 6 4 41 41 H 1.09003 * 109.88105 * 61.45549 * 22 6 4 42 42 H 1.09000 * 109.50143 * 287.25844 * 27 26 25 43 43 H 1.08993 * 109.53494 * 167.16144 * 27 26 25 44 44 H 1.08994 * 109.49784 * 175.45219 * 28 27 26 45 45 H 1.09001 * 109.52602 * 55.36626 * 28 27 26 46 46 H 1.08996 * 109.76682 * 282.53734 * 29 24 23 47 47 H 1.09008 * 109.76164 * 43.30566 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3404 1.1409 0.0000 4 6 1.8864 2.5466 0.0050 5 8 0.6977 2.8014 0.0092 6 7 2.7900 3.5466 0.0049 7 6 2.4772 4.9873 0.0035 8 6 3.7306 5.6634 0.6187 9 1 3.7167 5.6032 1.7068 10 6 3.8509 7.1160 0.1534 11 6 4.8718 4.7939 0.0280 12 1 5.7485 4.8168 0.6752 13 7 5.2135 5.2371 -1.3259 14 6 6.4256 4.9049 -1.8696 15 1 7.1295 4.3158 -1.3005 16 6 6.7492 5.3245 -3.1526 17 7 5.8908 6.0412 -3.8468 18 14 8.4023 4.8707 -3.8946 19 1 8.2834 3.5777 -4.6152 20 1 8.8258 5.9300 -4.8453 21 1 9.4122 4.7437 -2.8132 22 6 4.2509 3.3814 -0.0003 23 7 3.5966 0.7315 -0.0051 24 7 3.5979 -0.6625 -0.0074 25 6 2.3024 -1.0891 -0.0059 26 8 1.9453 -2.4016 -0.0120 27 6 2.9947 -3.3135 -0.3686 28 6 4.2613 -2.9599 0.4180 29 6 4.7517 -1.5690 -0.0086 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 0.8929 -0.5090 32 1 -0.3634 -0.8871 -0.5187 33 1 2.3148 5.3392 -1.0152 34 1 1.5994 5.1854 0.6187 35 1 3.7929 7.1551 -0.9344 36 1 3.0387 7.7033 0.5819 37 1 4.8069 7.5245 0.4812 38 1 4.5811 5.7659 -1.8372 39 1 6.1168 6.3340 -4.7435 40 1 4.5638 2.8211 0.8807 41 1 4.5612 2.8556 -0.9034 42 1 3.1964 -3.2363 -1.4370 43 1 2.6897 -4.3320 -0.1285 44 1 5.0360 -3.6981 0.2110 45 1 4.0384 -2.9557 1.4849 46 1 5.1793 -1.6200 -1.0099 47 1 5.5026 -1.2108 0.6958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054736009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:09 Heat of formation + Delta-G solvation = 31.222976 kcal Electronic energy + Delta-G solvation = -29810.545669 eV Core-core repulsion = 25803.164527 eV Total energy + Delta-G solvation = -4007.381142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91107 -39.71210 -38.53910 -37.36738 -35.07130 -33.91216 -32.46246 -31.55258 -30.90358 -30.37833 -27.66240 -27.14207 -26.53586 -25.69115 -24.06818 -23.57711 -22.17909 -21.22418 -20.05181 -19.23005 -18.92048 -17.85078 -17.31325 -16.83386 -16.09277 -15.95543 -15.63563 -15.20195 -15.16367 -14.72831 -14.62717 -14.44904 -13.98805 -13.64495 -13.28042 -12.98975 -12.96605 -12.89427 -12.58237 -12.47856 -12.12343 -12.03009 -11.80898 -11.78069 -11.58487 -11.49425 -11.42726 -11.08364 -10.90953 -10.78322 -10.59490 -10.36587 -10.22267 -9.88563 -9.71447 -9.59215 -9.15456 -8.96148 -8.27399 -8.09084 -7.00985 -5.79783 -3.08880 1.45828 2.04325 2.15712 2.76061 3.39878 3.40851 3.46021 3.47922 3.63299 3.83535 4.03983 4.38806 4.44212 4.56018 4.69050 4.83285 4.92430 5.00985 5.11192 5.17471 5.26927 5.31761 5.39909 5.41683 5.59808 5.62047 5.73014 5.84257 5.88556 5.96860 5.98203 6.06319 6.07898 6.28361 6.32538 6.34594 6.41455 6.46821 6.56351 6.67965 6.72183 6.90531 6.98826 7.13667 7.43153 7.68042 7.91769 8.38340 8.46477 9.50183 10.05784 10.40909 11.42617 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.003829 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.380749 B = 7311.276942 C = 9144.227854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.194 4.194 3 C 0.058 3.942 4 C 0.609 3.391 5 O -0.538 6.538 6 N -0.591 5.591 7 C 0.116 3.884 8 C -0.114 4.114 9 H 0.079 0.921 10 C -0.130 4.130 11 C 0.171 3.829 12 H 0.069 0.931 13 N -0.712 5.712 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.081 3.919 23 N -0.225 5.225 24 N -0.396 5.396 25 C 0.253 3.747 26 O -0.285 6.285 27 C 0.049 3.951 28 C -0.174 4.174 29 C 0.128 3.872 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.987 -16.557 10.617 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.206 4.206 3 C -0.110 4.110 4 C 0.395 3.605 5 O -0.415 6.415 6 N -0.323 5.323 7 C -0.006 4.006 8 C -0.134 4.134 9 H 0.098 0.902 10 C -0.188 4.188 11 C 0.058 3.942 12 H 0.087 0.913 13 N -0.353 5.353 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.219 1.219 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.045 4.045 23 N -0.054 5.054 24 N -0.193 5.193 25 C 0.088 3.912 26 O -0.193 6.193 27 C -0.027 4.027 28 C -0.212 4.212 29 C 0.008 3.992 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.412 -16.386 10.586 20.001 hybrid contribution 0.475 -0.755 -0.793 1.194 sum -3.937 -17.141 9.793 20.130 Atomic orbital electron populations 1.20079 0.87837 1.02765 1.01862 1.18816 0.97194 0.87378 1.17240 1.21852 0.90445 0.94625 1.04070 1.16454 0.84794 0.81797 0.77497 1.90738 1.15458 1.83274 1.52013 1.48285 1.07956 1.06037 1.70031 1.22363 0.97879 0.78993 1.01358 1.22665 0.95108 0.96145 0.99505 0.90237 1.21544 1.01032 0.93614 1.02641 1.21253 0.94380 0.89560 0.88969 0.91297 1.42449 1.18340 1.63020 1.11522 1.19222 0.93058 1.27664 0.97316 0.91077 1.24721 0.98181 1.00570 0.97096 1.69655 1.35247 1.41198 1.11700 0.86218 0.83698 0.77464 0.78941 1.21866 1.21801 1.20734 1.23311 0.77802 1.01398 1.01982 1.77886 1.18920 0.86355 1.22282 1.49270 1.04836 1.05109 1.60082 1.19145 0.84777 0.85008 1.02317 1.86624 1.36037 1.10964 1.85629 1.23095 0.86681 0.93376 0.99505 1.22635 0.99529 0.96600 1.02477 1.21954 0.86495 0.86471 1.04307 0.92178 0.89863 0.92466 0.90895 0.90963 0.91181 0.93639 0.92111 0.77750 0.93458 0.92324 0.89979 0.90942 0.86358 0.87186 0.89305 0.89003 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.83 36.01 0.35 -0.61 16 2 C -0.19 -3.14 6.14 -104.66 -0.64 -3.79 16 3 C 0.06 1.04 6.96 -82.71 -0.58 0.46 16 4 C 0.61 11.75 7.86 -12.38 -0.10 11.65 16 5 O -0.54 -11.04 15.12 5.30 0.08 -10.96 16 6 N -0.59 -11.04 3.32 -171.54 -0.57 -11.61 16 7 C 0.12 2.01 6.35 -2.41 -0.02 1.99 16 8 C -0.11 -1.85 3.53 -88.35 -0.31 -2.16 16 9 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 10 C -0.13 -2.08 8.85 37.16 0.33 -1.75 16 11 C 0.17 3.27 3.36 -66.09 -0.22 3.05 16 12 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 13 N -0.71 -16.96 4.61 -51.65 -0.24 -17.19 16 14 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 15 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 18 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.08 1.52 5.27 -3.06 -0.02 1.51 16 23 N -0.22 -3.85 10.10 33.43 0.34 -3.51 16 24 N -0.40 -5.49 4.08 -60.93 -0.25 -5.74 16 25 C 0.25 3.60 7.48 -16.72 -0.13 3.47 16 26 O -0.29 -3.28 10.65 -19.83 -0.21 -3.49 16 27 C 0.05 0.33 7.00 37.28 0.26 0.59 16 28 C -0.17 -0.98 6.16 -26.34 -0.16 -1.14 16 29 C 0.13 1.14 7.41 -3.64 -0.03 1.11 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.31 6.52 -51.92 -0.34 0.97 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.36 7.99 -51.93 -0.41 0.94 16 34 H 0.07 1.16 8.03 -51.93 -0.42 0.75 16 35 H 0.07 1.29 6.37 -51.93 -0.33 0.96 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.39 9.84 6.10 -40.82 -0.25 9.59 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 1.03 7.64 -51.93 -0.40 0.63 16 41 H 0.08 1.79 7.65 -51.93 -0.40 1.39 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -33.27 377.62 -8.12 -41.39 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -7.16 Total: 7.81 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.50 Total: 7.44 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.01 Total: -64.79 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.13 Total: -14.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.27 -8.12 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054736009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.617 kcal (2) G-P(sol) polarization free energy of solvation -33.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds