Wall clock time and date at job start Tue Mar 31 2020 17:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35365 * 127.24837 * 2 1 4 4 N 1.35033 * 107.22816 * 180.24704 * 3 2 1 5 5 H 0.97002 * 124.88451 * 179.77243 * 4 3 2 6 6 N 1.28464 * 110.23519 * 359.76643 * 4 3 2 7 7 C 1.31814 * 110.06778 * 0.02562 * 6 4 3 8 8 C 1.47718 * 126.51540 * 179.97438 * 7 6 4 9 9 O 1.21571 * 119.99515 * 174.07138 * 8 7 6 10 10 N 1.34771 * 120.00024 * 354.07467 * 8 7 6 11 11 C 1.47176 * 121.07546 * 173.49529 * 10 8 7 12 12 C 1.53285 * 108.51957 * 128.71374 * 11 10 8 13 13 H 1.08996 * 109.51093 * 293.15768 * 12 11 10 14 14 C 1.52996 * 109.51316 * 173.00367 * 12 11 10 15 15 O 1.43118 * 109.22558 * 53.07942 * 12 11 10 16 16 C 1.41881 * 114.43911 * 299.13352 * 15 12 11 17 17 C 1.54351 * 110.75862 * 296.40816 * 16 15 12 18 18 C 1.54478 * 102.96882 * 276.12169 * 17 16 15 19 19 N 1.47088 * 107.28537 * 338.89069 * 18 17 16 20 20 C 1.36936 * 125.62778 * 178.85162 * 19 18 17 21 21 H 1.08001 * 120.00304 * 179.69194 * 20 19 18 22 22 C 1.38816 * 120.00304 * 359.69726 * 20 19 18 23 23 N 1.31617 * 119.99815 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00143 * 180.27159 * 22 20 19 25 25 H 1.48504 * 109.47347 * 269.72423 * 24 22 20 26 26 H 1.48507 * 109.47297 * 29.72602 * 24 22 20 27 27 H 1.48500 * 109.47266 * 149.72476 * 24 22 20 28 28 C 1.47562 * 108.73949 * 358.59202 * 19 18 17 29 29 C 1.47318 * 121.07624 * 353.51641 * 10 8 7 30 30 H 1.09004 * 109.46527 * 270.12970 * 1 2 3 31 31 H 1.08999 * 109.47104 * 30.12800 * 1 2 3 32 32 H 1.08998 * 109.46854 * 150.13501 * 1 2 3 33 33 H 1.08005 * 126.38368 * 0.05393 * 3 2 1 34 34 H 1.08997 * 109.62933 * 9.00957 * 11 10 8 35 35 H 1.08998 * 109.63160 * 248.42162 * 11 10 8 36 36 H 1.09002 * 109.47058 * 300.25190 * 14 12 11 37 37 H 1.08998 * 109.47013 * 60.25336 * 14 12 11 38 38 H 1.09003 * 109.47239 * 180.25170 * 14 12 11 39 39 H 1.09004 * 110.73730 * 34.69503 * 17 16 15 40 40 H 1.08997 * 110.73132 * 158.00425 * 17 16 15 41 41 H 1.08998 * 110.00689 * 219.39857 * 18 17 16 42 42 H 1.08995 * 109.76092 * 98.24055 * 18 17 16 43 43 H 0.96997 * 120.00074 * 179.97438 * 23 22 20 44 44 H 1.09000 * 110.37794 * 142.40627 * 28 19 18 45 45 H 1.09002 * 110.37346 * 264.64238 * 28 19 18 46 46 H 1.09002 * 109.63397 * 109.42328 * 29 10 8 47 47 H 1.08998 * 109.64108 * 348.80811 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0056 5 1 4.3887 1.1730 -0.0100 6 7 3.5999 -0.6694 -0.0040 7 6 2.3635 -1.1263 0.0020 8 6 1.9506 -2.5446 0.0050 9 8 0.7757 -2.8353 0.1193 10 7 2.8763 -3.5162 -0.1189 11 6 2.5120 -4.9351 0.0226 12 6 3.0469 -5.6989 -1.1940 13 1 2.5167 -5.3746 -2.0894 14 6 2.8349 -7.2001 -0.9887 15 8 4.4447 -5.4294 -1.3424 16 6 4.7594 -4.0628 -1.5573 17 6 4.1556 -3.5650 -2.8877 18 6 5.2089 -3.9999 -3.9307 19 7 6.4776 -4.1993 -3.2136 20 6 7.6562 -4.6100 -3.7769 21 1 8.5379 -4.7222 -3.1632 22 6 7.7180 -4.8821 -5.1367 23 7 6.6436 -4.7458 -5.8846 24 14 9.3239 -5.4496 -5.9037 25 1 10.0976 -4.2684 -6.3635 26 1 10.1165 -6.1986 -4.8956 27 1 9.0345 -6.3331 -7.0617 28 6 6.2721 -3.8778 -1.7882 29 6 4.2857 -3.1923 -0.4000 30 1 -0.3632 0.0023 1.0277 31 1 -0.3633 0.8888 -0.5158 32 1 -0.3633 -0.8912 -0.5117 33 1 2.0220 2.1138 0.0008 34 1 1.4273 -5.0319 0.0676 35 1 2.9566 -5.3384 0.9325 36 1 3.3639 -7.5224 -0.0918 37 1 1.7703 -7.4046 -0.8759 38 1 3.2196 -7.7428 -1.8522 39 1 3.1966 -4.0460 -3.0802 40 1 4.0500 -2.4802 -2.8816 41 1 5.3283 -3.2234 -4.6862 42 1 4.8985 -4.9328 -4.4010 43 1 6.6868 -4.9355 -6.8348 44 1 6.8387 -4.5640 -1.1588 45 1 6.5655 -2.8477 -1.5854 46 1 4.8914 -3.3957 0.4831 47 1 4.3725 -2.1407 -0.6732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071169228.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:56 Heat of formation + Delta-G solvation = 45.678721 kcal Electronic energy + Delta-G solvation = -30670.623269 eV Core-core repulsion = 26663.868975 eV Total energy + Delta-G solvation = -4006.754294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.87276 -40.33544 -38.55726 -36.18451 -34.71598 -33.22590 -32.97706 -31.64693 -31.09883 -29.24960 -28.38948 -27.36703 -26.70102 -25.56340 -23.87385 -23.23837 -21.69897 -20.85335 -20.10968 -19.55212 -18.93079 -18.14285 -17.03237 -16.94264 -16.42559 -16.08268 -15.64969 -14.98934 -14.71011 -14.58236 -14.03633 -14.02870 -13.75088 -13.45557 -13.31868 -13.21059 -13.04088 -12.82802 -12.52465 -12.34424 -12.13702 -11.95616 -11.87001 -11.70144 -11.51130 -10.97920 -10.90206 -10.84263 -10.67113 -10.25265 -10.17998 -10.05787 -10.03214 -9.80558 -9.60919 -9.52208 -9.42824 -9.01464 -8.53875 -8.25343 -6.77251 -5.65078 -2.98078 1.44761 1.93088 2.61647 3.01007 3.35604 3.43512 3.48459 3.50757 3.99279 4.23398 4.53275 4.57606 4.79803 4.92611 5.08903 5.13702 5.18549 5.25616 5.33821 5.36092 5.52496 5.57202 5.62185 5.66714 5.69910 5.76443 5.78394 5.87920 5.90733 5.99477 6.05098 6.13756 6.19266 6.27950 6.36272 6.50771 6.53762 6.54582 6.59757 6.71441 6.84374 7.36612 7.60096 7.67432 7.68672 7.79524 7.89353 8.16982 8.30808 9.27301 9.87472 10.53640 11.46792 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014316 B = 0.003767 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.418270 B = 7431.763451 C = 8658.922813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.147 4.147 3 C -0.018 4.018 4 N -0.382 5.382 5 H 0.447 0.553 6 N -0.252 5.252 7 C -0.008 4.008 8 C 0.606 3.394 9 O -0.537 6.537 10 N -0.598 5.598 11 C 0.085 3.915 12 C 0.070 3.930 13 H 0.065 0.935 14 C -0.140 4.140 15 O -0.346 6.346 16 C 0.094 3.906 17 C -0.165 4.165 18 C 0.186 3.814 19 N -0.599 5.599 20 C -0.224 4.224 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.154 3.846 29 C 0.078 3.922 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.184 0.816 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.251 0.749 44 H 0.050 0.950 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 9.810 14.148 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.157 4.157 3 C -0.162 4.162 4 N -0.095 5.095 5 H 0.292 0.708 6 N -0.088 5.088 7 C -0.168 4.168 8 C 0.392 3.608 9 O -0.413 6.413 10 N -0.330 5.330 11 C -0.038 4.038 12 C 0.011 3.989 13 H 0.083 0.917 14 C -0.197 4.197 15 O -0.265 6.265 16 C 0.052 3.948 17 C -0.203 4.203 18 C 0.062 3.938 19 N -0.325 5.325 20 C -0.352 4.352 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.027 3.973 29 C -0.046 4.046 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.201 0.799 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.089 0.911 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.274 9.057 13.999 19.585 hybrid contribution 0.410 0.579 -0.531 0.886 sum -9.864 9.636 13.468 19.275 Atomic orbital electron populations 1.20153 0.88063 1.02999 1.02304 1.20371 0.97587 0.90366 1.07388 1.22701 0.84182 1.00515 1.08838 1.43404 1.08668 1.04645 1.52798 0.70813 1.73518 1.22660 0.93519 1.19107 1.21832 0.89511 0.94937 1.10561 1.16926 0.84848 0.82608 0.76375 1.90739 1.16742 1.82469 1.51343 1.47993 1.09367 1.06050 1.69600 1.22413 1.02367 0.79813 0.99178 1.22445 0.84261 0.95806 0.96369 0.91732 1.21675 1.01521 0.93228 1.03307 1.87894 1.21871 1.24521 1.92194 1.22390 0.97986 0.81647 0.92748 1.23339 1.00068 0.99874 0.97042 1.21089 0.82528 0.99605 0.90595 1.44419 1.07759 1.79029 1.01323 1.19051 0.86896 1.37739 0.91529 0.90404 1.24783 0.97457 1.01968 0.96270 1.69971 1.26682 1.55053 1.05304 0.86120 0.82680 0.78127 0.78841 1.21733 1.20689 1.21743 1.21310 0.89578 0.97803 0.88592 1.22899 0.79905 1.03242 0.98536 0.91470 0.91966 0.90087 0.79917 0.88325 0.90687 0.91823 0.91242 0.91125 0.91970 0.92190 0.94134 0.93477 0.93866 0.93178 0.94729 0.91095 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.88 36.01 0.36 -0.42 16 2 C -0.15 -1.69 6.25 -104.40 -0.65 -2.34 16 3 C -0.02 -0.15 11.97 -17.17 -0.21 -0.35 16 4 N -0.38 -3.34 6.83 30.47 0.21 -3.14 16 5 H 0.45 2.24 8.96 -190.44 -1.71 0.53 16 6 N -0.25 -3.18 8.75 33.42 0.29 -2.89 16 7 C -0.01 -0.12 6.83 -82.76 -0.57 -0.68 16 8 C 0.61 9.63 7.71 -12.39 -0.10 9.53 16 9 O -0.54 -9.28 14.68 5.30 0.08 -9.20 16 10 N -0.60 -9.23 2.95 -173.86 -0.51 -9.75 16 11 C 0.08 1.20 5.92 -3.53 -0.02 1.18 16 12 C 0.07 1.09 3.20 -26.59 -0.09 1.01 16 13 H 0.06 1.09 6.25 -51.93 -0.32 0.76 16 14 C -0.14 -1.80 9.57 37.16 0.36 -1.44 16 15 O -0.35 -6.69 9.92 -35.22 -0.35 -7.04 16 16 C 0.09 1.77 0.84 -89.65 -0.08 1.69 16 17 C -0.16 -3.34 5.88 -25.25 -0.15 -3.49 16 18 C 0.19 4.74 5.39 -2.95 -0.02 4.72 16 19 N -0.60 -15.72 3.40 -170.30 -0.58 -16.30 16 20 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -27.67 10.31 55.49 0.57 -27.10 16 24 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 C 0.15 3.28 6.41 -2.87 -0.02 3.26 16 29 C 0.08 1.23 4.89 -3.92 -0.02 1.21 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.98 6.86 -51.93 -0.36 0.63 16 33 H 0.18 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.10 1.35 7.06 -51.93 -0.37 0.98 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.23 6.10 -51.93 -0.32 0.91 16 40 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 41 H 0.04 1.13 7.52 -51.93 -0.39 0.73 16 42 H 0.05 1.34 7.37 -51.93 -0.38 0.96 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.13 2.01 4.18 -53.98 -0.23 1.79 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -35.19 367.66 -9.46 -44.65 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.24 Total: 0.77 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.44 Total: 7.01 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.02 Total: -59.16 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.27 Total: -16.24 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.19 -9.46 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071169228.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.329 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds