Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35365 * 127.24462 * 2 1 4 4 N 1.35039 * 107.22240 * 180.02562 * 3 2 1 5 5 C 1.46498 * 124.87778 * 180.02562 * 4 3 2 6 6 N 1.28460 * 110.23214 * 0.02562 * 4 3 2 7 7 C 1.31809 * 110.07762 * 0.02562 * 6 4 3 8 8 C 1.47715 * 126.51910 * 179.74252 * 7 6 4 9 9 O 1.21568 * 119.99651 * 186.04965 * 8 7 6 10 10 N 1.34775 * 120.00138 * 6.04072 * 8 7 6 11 11 C 1.46843 * 120.41032 * 6.18742 * 10 8 7 12 12 C 1.53360 * 109.25157 * 127.72469 * 11 10 8 13 13 C 1.52788 * 108.81873 * 53.82864 * 12 11 10 14 14 H 1.08995 * 109.34235 * 57.16497 * 13 12 11 15 15 O 1.42607 * 111.10940 * 177.47655 * 13 12 11 16 16 C 1.43146 * 113.62731 * 183.61096 * 15 13 12 17 17 C 1.53186 * 109.74658 * 298.31243 * 16 15 13 18 18 N 1.47355 * 108.79827 * 51.21122 * 17 16 15 19 19 C 1.36944 * 121.30375 * 129.78201 * 18 17 16 20 20 H 1.07998 * 120.00014 * 226.64769 * 19 18 17 21 21 C 1.38811 * 119.99986 * 46.64447 * 19 18 17 22 22 N 1.31615 * 120.00085 * 183.55018 * 21 19 18 23 23 Si 1.86805 * 120.00110 * 3.55152 * 21 19 18 24 24 H 1.48501 * 109.46920 * 83.03704 * 23 21 19 25 25 H 1.48497 * 109.47061 * 203.03582 * 23 21 19 26 26 H 1.48494 * 109.46873 * 323.03580 * 23 21 19 27 27 C 1.46869 * 117.39326 * 309.75935 * 18 17 16 28 28 H 1.09003 * 109.65404 * 292.35720 * 27 18 17 29 29 C 1.47122 * 120.41130 * 185.90579 * 10 8 7 30 30 H 1.09004 * 109.47088 * 269.95548 * 1 2 3 31 31 H 1.08995 * 109.47413 * 29.95325 * 1 2 3 32 32 H 1.09007 * 109.47253 * 149.96082 * 1 2 3 33 33 H 1.07996 * 126.38532 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47387 * 269.97276 * 5 4 3 35 35 H 1.09001 * 109.47285 * 29.97743 * 5 4 3 36 36 H 1.09006 * 109.46600 * 149.97768 * 5 4 3 37 37 H 1.08998 * 109.50954 * 247.65902 * 11 10 8 38 38 H 1.08998 * 109.50889 * 7.78897 * 11 10 8 39 39 H 1.08997 * 109.58178 * 173.63474 * 12 11 10 40 40 H 1.09000 * 109.58055 * 294.03106 * 12 11 10 41 41 H 1.09010 * 109.42327 * 178.22820 * 16 15 13 42 42 H 1.08999 * 109.38194 * 58.37515 * 16 15 13 43 43 H 1.09007 * 109.58451 * 291.41949 * 17 16 15 44 44 H 1.08994 * 109.70045 * 171.07589 * 17 16 15 45 45 H 0.96992 * 120.00513 * 179.97438 * 22 21 19 46 46 H 1.09005 * 109.72832 * 352.92263 * 29 10 8 47 47 H 1.09005 * 109.72800 * 113.59397 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6152 -0.0006 5 6 4.7936 1.4576 -0.0002 6 7 3.5998 -0.6694 -0.0015 7 6 2.3634 -1.1264 -0.0021 8 6 1.9505 -2.5446 -0.0085 9 8 0.7753 -2.8350 -0.1193 10 7 2.8768 -3.5167 0.1083 11 6 4.2799 -3.1779 0.3779 12 6 4.7698 -3.9796 1.5900 13 6 4.5027 -5.4631 1.3404 14 1 4.9968 -5.7686 0.4181 15 8 4.9934 -6.2613 2.4154 16 6 4.8446 -7.6686 2.1995 17 6 3.3591 -8.0170 2.0629 18 7 2.7526 -7.1253 1.0587 19 6 1.9962 -7.6217 0.0307 20 1 2.1625 -7.2749 -0.9784 21 6 1.0158 -8.5707 0.2858 22 7 0.3366 -9.0992 -0.7099 23 14 0.6604 -9.0976 2.0424 24 1 -0.2625 -8.1212 2.6750 25 1 0.0308 -10.4425 2.0380 26 1 1.9302 -9.1480 2.8105 27 6 2.9907 -5.6833 1.2038 28 1 2.4846 -5.3162 2.0967 29 6 2.4934 -4.9307 -0.0265 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3634 -0.8897 -0.5145 33 1 2.0219 2.1138 -0.0004 34 1 5.0910 1.6669 -1.0278 35 1 4.5792 2.3945 0.5139 36 1 5.6026 0.9381 0.5135 37 1 4.8878 -3.4257 -0.4922 38 1 4.3629 -2.1118 0.5889 39 1 5.8392 -3.8188 1.7263 40 1 4.2333 -3.6570 2.4824 41 1 5.2682 -8.2117 3.0444 42 1 5.3689 -7.9519 1.2869 43 1 2.8615 -7.8781 3.0228 44 1 3.2528 -9.0534 1.7429 45 1 -0.3483 -9.7626 -0.5318 46 1 1.4086 -5.0131 -0.0929 47 1 2.9506 -5.3521 -0.9218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074239275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = 61.533573 kcal Electronic energy + Delta-G solvation = -30451.107911 eV Core-core repulsion = 26445.041135 eV Total energy + Delta-G solvation = -4006.066776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.81748 -39.90140 -38.48997 -36.05485 -34.80880 -34.04251 -32.42845 -31.60950 -31.40895 -30.21659 -28.42534 -27.46087 -26.63873 -24.94660 -23.90602 -22.80072 -21.76070 -21.22813 -20.88489 -19.84323 -18.98508 -17.16647 -16.79649 -16.68771 -16.47308 -15.74021 -15.52436 -15.36898 -15.01199 -14.30836 -14.14720 -14.01312 -13.84459 -13.71665 -13.48580 -13.33399 -13.13616 -13.01999 -12.64827 -12.58290 -12.49026 -12.41095 -12.19466 -11.82159 -11.72374 -11.14545 -11.08282 -10.93001 -10.66269 -10.62534 -10.19529 -10.04738 -9.74921 -9.62321 -9.34469 -9.29958 -9.03776 -8.83462 -8.36573 -8.23364 -6.65901 -5.96045 -3.58822 1.54638 2.03422 2.26428 3.25376 3.38190 3.47394 3.52450 3.57781 4.10285 4.24093 4.55670 4.56742 4.67465 4.70341 4.84979 4.96883 5.04712 5.19955 5.24263 5.32125 5.35448 5.47330 5.48619 5.66204 5.72287 5.80721 5.82153 5.83912 5.93905 5.98703 6.02444 6.09279 6.13559 6.16750 6.26329 6.37590 6.50484 6.52483 6.63512 6.69090 6.79025 6.84961 7.00640 7.65355 7.73668 7.85086 8.08984 8.37604 8.49110 8.88522 9.66931 10.12311 11.17530 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015974 B = 0.003798 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.407610 B = 7370.531642 C = 8626.240835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.144 4.144 3 C -0.024 4.024 4 N -0.291 5.291 5 C 0.088 3.912 6 N -0.262 5.262 7 C -0.004 4.004 8 C 0.598 3.402 9 O -0.525 6.525 10 N -0.599 5.599 11 C 0.091 3.909 12 C -0.121 4.121 13 C 0.075 3.925 14 H 0.055 0.945 15 O -0.387 6.387 16 C 0.046 3.954 17 C 0.103 3.897 18 N -0.603 5.603 19 C -0.276 4.276 20 H 0.081 0.919 21 C 0.045 3.955 22 N -0.906 5.906 23 Si 0.855 3.145 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.232 1.232 27 C 0.139 3.861 28 H 0.040 0.960 29 C 0.128 3.872 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.264 0.736 46 H 0.107 0.893 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 21.836 2.954 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.154 4.154 3 C -0.167 4.167 4 N -0.078 5.078 5 C -0.053 4.053 6 N -0.098 5.098 7 C -0.163 4.163 8 C 0.384 3.616 9 O -0.399 6.399 10 N -0.332 5.332 11 C -0.033 4.033 12 C -0.160 4.160 13 C 0.015 3.985 14 H 0.073 0.927 15 O -0.306 6.306 16 C -0.032 4.032 17 C -0.022 4.022 18 N -0.330 5.330 19 C -0.404 4.404 20 H 0.098 0.902 21 C -0.157 4.157 22 N -0.546 5.546 23 Si 0.684 3.316 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.157 1.157 27 C 0.032 3.968 28 H 0.058 0.942 29 C 0.007 3.993 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.197 0.803 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.228 21.348 2.962 24.302 hybrid contribution -1.023 -0.279 0.677 1.258 sum 10.205 21.070 3.639 23.692 Atomic orbital electron populations 1.20211 0.88042 1.03265 1.02420 1.20394 0.97559 0.90399 1.07032 1.22583 0.83712 1.00399 1.09962 1.45439 1.06980 1.04017 1.51325 1.22151 0.84938 0.93816 1.04373 1.73333 1.22825 0.93200 1.20419 1.21987 0.89272 0.95188 1.09892 1.16972 0.85214 0.82391 0.77047 1.90790 1.16745 1.82160 1.50255 1.48096 1.08407 1.06960 1.69722 1.22403 0.81137 1.02787 0.96931 1.21857 1.01650 0.93582 0.98927 1.22516 0.95719 0.90349 0.89868 0.92679 1.87760 1.82516 1.17160 1.43202 1.23138 0.98323 0.81325 1.00459 1.22453 0.91009 0.95641 0.93112 1.44225 1.59273 0.98919 1.30579 1.18667 1.11082 1.23148 0.87517 0.90168 1.25676 0.94572 0.98320 0.97099 1.69761 1.24381 1.29488 1.30988 0.87691 0.80368 0.77014 0.86574 1.21028 1.22748 1.15695 1.21293 0.92849 0.86225 0.96430 0.94188 1.21647 1.03518 0.76344 0.97773 0.91507 0.92117 0.89483 0.80336 0.89786 0.88781 0.88526 0.91742 0.85513 0.90427 0.91178 0.89903 0.93413 0.94608 0.90387 0.92588 0.87455 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.99 36.01 0.36 -0.61 16 2 C -0.14 -1.85 6.25 -104.40 -0.65 -2.50 16 3 C -0.02 -0.22 11.40 -17.17 -0.20 -0.42 16 4 N -0.29 -2.73 3.70 -68.12 -0.25 -2.98 16 5 C 0.09 0.36 11.31 59.85 0.68 1.04 16 6 N -0.26 -3.35 8.42 33.42 0.28 -3.07 16 7 C 0.00 -0.06 6.83 -82.76 -0.57 -0.62 16 8 C 0.60 11.08 7.69 -12.39 -0.10 10.99 16 9 O -0.53 -11.31 14.49 5.31 0.08 -11.23 16 10 N -0.60 -10.72 2.99 -174.12 -0.52 -11.24 16 11 C 0.09 1.32 6.09 -3.67 -0.02 1.30 16 12 C -0.12 -1.81 5.82 -26.65 -0.16 -1.96 16 13 C 0.07 1.37 2.48 -26.63 -0.07 1.31 16 14 H 0.06 1.03 8.13 -51.93 -0.42 0.61 16 15 O -0.39 -7.38 10.49 -35.23 -0.37 -7.75 16 16 C 0.05 0.84 6.95 37.25 0.26 1.10 16 17 C 0.10 2.23 4.07 -3.48 -0.01 2.22 16 18 N -0.60 -14.55 2.58 -164.61 -0.42 -14.97 16 19 C -0.28 -7.65 8.82 -15.06 -0.13 -7.78 16 20 H 0.08 2.39 7.05 -52.49 -0.37 2.02 16 21 C 0.05 1.30 5.44 -17.43 -0.09 1.21 16 22 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 23 Si 0.85 21.61 26.18 -169.99 -4.45 17.16 16 24 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 25 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 26 H -0.23 -5.26 3.74 56.52 0.21 -5.05 16 27 C 0.14 2.98 3.01 -67.75 -0.20 2.78 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 C 0.13 2.69 4.70 -3.93 -0.02 2.67 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.27 6.62 -51.92 -0.34 0.92 16 33 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 0.14 8.13 -51.93 -0.42 -0.28 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.13 1.71 4.12 -77.29 -0.32 1.39 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.80 6.37 -51.93 -0.33 0.47 16 44 H 0.08 1.74 6.07 -51.93 -0.32 1.42 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.11 2.60 6.81 -51.93 -0.35 2.25 16 47 H 0.08 1.62 7.35 -51.93 -0.38 1.24 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -35.23 360.03 -7.61 -42.84 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.23 Total: 2.22 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.92 Total: 10.71 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.14 Total: -59.37 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.29 Total: -18.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.45 Total: 17.16 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.23 -7.61 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074239275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.371 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds