Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39667 * 127.32089 * 2 1 4 4 N 1.30858 * 107.86227 * 180.02562 * 3 2 1 5 5 N 1.28442 * 110.93009 * 359.71980 * 4 3 2 6 6 C 1.46495 * 125.19428 * 180.27745 * 5 4 3 7 7 C 1.36606 * 109.61579 * 0.45995 * 5 4 3 8 8 C 1.47164 * 126.88205 * 179.81720 * 7 5 4 9 9 O 1.21625 * 120.00283 * 98.32694 * 8 7 5 10 10 N 1.34773 * 119.99973 * 278.32209 * 8 7 5 11 11 C 1.46846 * 120.41192 * 5.94045 * 10 8 7 12 12 C 1.53364 * 109.25123 * 232.23123 * 11 10 8 13 13 C 1.52787 * 108.81587 * 306.16347 * 12 11 10 14 14 H 1.08998 * 108.96288 * 303.07163 * 13 12 11 15 15 O 1.42606 * 111.11202 * 182.52931 * 13 12 11 16 16 C 1.43148 * 113.62968 * 176.38678 * 15 13 12 17 17 C 1.53193 * 109.69573 * 61.71836 * 16 15 13 18 18 N 1.47338 * 108.81123 * 308.70175 * 17 16 15 19 19 C 1.36931 * 121.34710 * 230.31178 * 18 17 16 20 20 H 1.08001 * 119.99927 * 149.57619 * 19 18 17 21 21 C 1.38811 * 120.00261 * 329.56934 * 19 18 17 22 22 N 1.31618 * 119.99939 * 348.33088 * 21 19 18 23 23 Si 1.86800 * 120.00364 * 168.33057 * 21 19 18 24 24 H 1.48500 * 109.46867 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47337 * 119.99691 * 23 21 19 26 26 H 1.48492 * 109.47584 * 240.00191 * 23 21 19 27 27 C 1.46870 * 117.34430 * 50.33106 * 18 17 16 28 28 H 1.08997 * 109.65094 * 67.61632 * 27 18 17 29 29 C 1.47129 * 120.41359 * 185.91830 * 10 8 7 30 30 H 1.09000 * 109.47143 * 269.96862 * 1 2 3 31 31 H 1.08993 * 109.47449 * 29.96832 * 1 2 3 32 32 H 1.09001 * 109.47088 * 149.97206 * 1 2 3 33 33 H 1.07999 * 126.06649 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47528 * 274.39137 * 6 5 4 35 35 H 1.09001 * 109.47298 * 34.39603 * 6 5 4 36 36 H 1.09005 * 109.46992 * 154.38885 * 6 5 4 37 37 H 1.09000 * 109.50777 * 352.15942 * 11 10 8 38 38 H 1.08996 * 109.51181 * 112.29564 * 11 10 8 39 39 H 1.08995 * 109.58542 * 186.35890 * 12 11 10 40 40 H 1.09009 * 109.58065 * 65.96019 * 12 11 10 41 41 H 1.09002 * 109.42317 * 181.76243 * 16 15 13 42 42 H 1.08996 * 109.43051 * 301.65518 * 16 15 13 43 43 H 1.08992 * 109.58900 * 68.55647 * 17 16 15 44 44 H 1.09009 * 109.57879 * 188.96973 * 17 16 15 45 45 H 0.97001 * 120.00385 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.72230 * 7.12736 * 29 10 8 47 47 H 1.08999 * 109.76713 * 246.47760 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3538 1.1107 0.0000 4 7 3.5876 0.6748 -0.0006 5 7 3.6206 -0.6092 0.0049 6 6 4.8391 -1.4225 0.0119 7 6 2.3460 -1.1007 -0.0007 8 6 1.9455 -2.5168 -0.0010 9 8 1.6281 -3.0593 1.0402 10 7 1.9303 -3.2125 -1.1552 11 6 2.4343 -2.6074 -2.3946 12 6 1.3710 -2.7417 -3.4916 13 6 0.9684 -4.2107 -3.6105 14 1 1.8580 -4.8063 -3.8153 15 8 0.0211 -4.4005 -4.6595 16 6 -0.3323 -5.7712 -4.8725 17 6 -0.9871 -6.3379 -3.6088 18 7 -0.1182 -6.0511 -2.4540 19 6 0.2428 -7.0349 -1.5726 20 1 1.1944 -6.9820 -1.0644 21 6 -0.6141 -8.1000 -1.3320 22 7 -1.8566 -8.0556 -1.7640 23 14 -0.0041 -9.5965 -0.3951 24 1 1.4195 -9.3998 -0.0210 25 1 -0.8179 -9.7768 0.8340 26 1 -0.1289 -10.8023 -1.2527 27 6 0.3451 -4.6677 -2.2854 28 1 -0.5001 -4.0258 -2.0371 29 6 1.4090 -4.5880 -1.1890 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5143 33 1 2.0450 2.1456 -0.0004 34 1 5.1879 -1.5631 -1.0112 35 1 5.6104 -0.9165 0.5925 36 1 4.6255 -2.3931 0.4596 37 1 2.6494 -1.5527 -2.2235 38 1 3.3448 -3.1194 -2.7057 39 1 1.7802 -2.3971 -4.4413 40 1 0.4980 -2.1438 -3.2294 41 1 -1.0321 -5.8399 -5.7053 42 1 0.5648 -6.3451 -5.1045 43 1 -1.9601 -5.8697 -3.4601 44 1 -1.1104 -7.4159 -3.7133 45 1 -2.4556 -8.7998 -1.5956 46 1 0.9638 -4.8364 -0.2255 47 1 2.2184 -5.2836 -1.4105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074317865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = 15.444696 kcal Electronic energy + Delta-G solvation = -30797.932157 eV Core-core repulsion = 26789.866817 eV Total energy + Delta-G solvation = -4008.065340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.59583 -41.41984 -40.01600 -37.56755 -36.54964 -34.96330 -33.74552 -33.15112 -32.66692 -31.47165 -29.60379 -28.79979 -27.15473 -26.81283 -25.57664 -24.28485 -23.38379 -22.33000 -21.88880 -21.38770 -20.06964 -18.93101 -18.70049 -17.79430 -17.26635 -17.08287 -16.77280 -16.69699 -16.31811 -16.17886 -15.61958 -15.49607 -15.29614 -14.74179 -14.71432 -14.52198 -14.34943 -14.26768 -14.03489 -13.91344 -13.51312 -13.41443 -13.35130 -13.10666 -12.99364 -12.88964 -12.77139 -12.45216 -12.38455 -12.04613 -11.96660 -11.81771 -11.67886 -11.34396 -11.27876 -10.75687 -10.56298 -10.14511 -9.90568 -9.68195 -8.71623 -7.92620 -5.45258 0.56208 0.99573 1.43193 1.45478 1.48479 1.55148 1.67675 1.95921 2.44851 2.78425 3.19111 3.25102 3.39632 3.52891 3.77072 3.84524 3.97923 4.09891 4.15518 4.16305 4.20342 4.26616 4.35137 4.38823 4.43873 4.50111 4.53488 4.53661 4.57647 4.64562 4.73511 4.78686 4.83017 4.94760 5.01459 5.06688 5.10232 5.14384 5.20854 5.32624 5.54137 5.55914 5.60197 5.75790 6.10467 6.25417 6.33343 6.78948 7.03634 7.03954 7.69923 8.26893 9.13533 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003923 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.831536 B = 7134.822310 C = 7982.721200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.164 4.164 3 C 0.009 3.991 4 N -0.292 5.292 5 N -0.274 5.274 6 C 0.076 3.924 7 C -0.044 4.044 8 C 0.593 3.407 9 O -0.567 6.567 10 N -0.592 5.592 11 C 0.115 3.885 12 C -0.114 4.114 13 C 0.082 3.918 14 H 0.061 0.939 15 O -0.391 6.391 16 C 0.052 3.948 17 C 0.148 3.852 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.076 0.924 21 C -0.043 4.043 22 N -0.934 5.934 23 Si 0.965 3.035 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.285 1.285 27 C 0.135 3.865 28 H 0.006 0.994 29 C 0.140 3.860 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.218 0.782 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.108 0.892 42 H 0.052 0.948 43 H -0.003 1.003 44 H 0.069 0.931 45 H 0.251 0.749 46 H 0.065 0.935 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.689 16.433 -3.954 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.174 4.174 3 C -0.168 4.168 4 N -0.122 5.122 5 N -0.063 5.063 6 C -0.063 4.063 7 C -0.172 4.172 8 C 0.379 3.621 9 O -0.444 6.444 10 N -0.324 5.324 11 C -0.007 4.007 12 C -0.152 4.152 13 C 0.023 3.977 14 H 0.079 0.921 15 O -0.310 6.310 16 C -0.026 4.026 17 C 0.023 3.977 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.093 0.907 21 C -0.239 4.239 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.212 1.212 27 C 0.028 3.972 28 H 0.024 0.976 29 C 0.018 3.982 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.234 0.766 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.015 0.985 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.626 16.397 -3.489 21.604 hybrid contribution -1.368 -1.872 0.982 2.518 sum 12.258 14.526 -2.507 19.171 Atomic orbital electron populations 1.20157 0.87904 1.03079 1.02421 1.20956 0.97491 0.90858 1.08135 1.23916 0.86881 1.00853 1.05130 1.73121 1.24923 0.93215 1.20966 1.45824 1.05509 1.03805 1.51137 1.22494 0.83071 0.94185 1.06526 1.21099 0.87478 0.93417 1.15201 1.17402 0.77303 0.84112 0.83273 1.90838 1.50175 1.70368 1.33038 1.48263 1.60600 1.14454 1.09048 1.21961 0.97118 0.99838 0.81737 1.21829 0.99427 0.93551 1.00434 1.22472 0.91038 0.97429 0.86790 0.92085 1.87757 1.62817 1.26682 1.53793 1.23190 0.99568 0.81864 0.97947 1.21277 0.90941 0.99863 0.85658 1.44265 1.58341 1.03082 1.27244 1.19460 0.99495 1.00786 1.19451 0.90651 1.25896 0.94845 1.02955 1.00235 1.70147 1.05098 1.31945 1.50766 0.85247 0.78195 0.79585 0.77703 1.18811 1.22395 1.21171 1.21421 0.94185 0.86878 0.94744 0.97587 1.21408 0.96421 0.80957 0.99425 0.91408 0.88047 0.93925 0.76590 0.86930 0.86604 0.89716 0.88178 0.88013 0.86833 0.91592 0.87363 0.93004 0.98530 0.91308 0.93972 0.91628 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 10.28 71.24 0.73 -1.00 16 2 C -0.16 -3.95 6.29 -19.48 -0.12 -4.07 16 3 C 0.01 0.18 12.00 85.18 1.02 1.20 16 4 N -0.29 -6.41 11.90 -57.15 -0.68 -7.09 16 5 N -0.27 -6.03 3.66 -356.02 -1.30 -7.33 16 6 C 0.08 1.10 11.21 127.77 1.43 2.53 16 7 C -0.04 -1.17 4.67 40.79 0.19 -0.98 16 8 C 0.59 19.58 6.65 86.59 0.58 20.16 16 9 O -0.57 -24.04 16.54 -4.11 -0.07 -24.11 16 10 N -0.59 -17.84 2.98 -822.84 -2.45 -20.30 16 11 C 0.11 2.45 6.33 86.44 0.55 3.00 16 12 C -0.11 -2.75 5.82 30.65 0.18 -2.57 16 13 C 0.08 2.72 2.47 30.66 0.08 2.80 16 14 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 15 O -0.39 -14.25 10.49 -148.98 -1.56 -15.82 16 16 C 0.05 1.92 6.96 72.05 0.50 2.42 16 17 C 0.15 7.10 5.38 86.28 0.46 7.56 16 18 N -0.60 -29.94 3.03 -673.95 -2.04 -31.98 16 19 C -0.26 -13.97 8.81 84.03 0.74 -13.23 16 20 H 0.08 3.87 6.34 -2.91 -0.02 3.85 16 21 C -0.04 -2.38 5.05 84.86 0.43 -1.95 16 22 N -0.93 -54.77 11.16 21.65 0.24 -54.53 16 23 Si 0.96 44.45 29.57 68.60 2.03 46.47 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 C 0.14 5.63 3.02 45.05 0.14 5.77 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 C 0.14 5.36 4.50 86.26 0.39 5.74 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 1.38 7.67 -2.38 -0.02 1.36 16 37 H 0.10 1.89 6.23 -2.39 -0.01 1.88 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.07 3.62 6.34 -2.38 -0.02 3.60 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 46 H 0.07 3.02 6.86 -2.39 -0.02 3.00 16 47 H 0.08 3.05 7.35 -2.39 -0.02 3.03 16 Total: -1.00 -74.09 373.03 2.43 -71.67 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.97 Total: 15.64 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 7.29 Total: 27.37 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.24 Total: -121.22 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.63 Total: -39.93 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -74.09 2.43 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074317865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.111 kcal (2) G-P(sol) polarization free energy of solvation -74.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds