Wall clock time and date at job start Tue Mar 31 2020 19:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30793 * 125.72056 * 2 1 4 4 C 1.34430 * 109.31803 * 180.02562 * 3 2 1 5 5 C 1.33861 * 107.79770 * 359.97438 * 4 3 2 6 6 N 1.34409 * 125.72807 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44533 * 359.82564 * 6 2 1 8 8 C 1.53279 * 108.69432 * 197.29722 * 7 6 2 9 9 H 1.08997 * 109.43502 * 69.26589 * 8 7 6 10 10 C 1.50709 * 109.42967 * 189.16442 * 8 7 6 11 11 O 1.21275 * 120.00156 * 0.10053 * 10 8 7 12 12 N 1.34772 * 119.99855 * 180.09167 * 10 8 7 13 13 C 1.46505 * 120.00142 * 180.02562 * 12 10 8 14 14 H 1.09003 * 110.77307 * 36.79151 * 13 12 10 15 15 C 1.54316 * 110.72162 * 273.55373 * 13 12 10 16 16 N 1.47024 * 107.27155 * 219.44332 * 15 13 12 17 17 C 1.36936 * 125.65204 * 178.90417 * 16 15 13 18 18 H 1.07999 * 119.99737 * 341.52104 * 17 16 15 19 19 C 1.38812 * 120.00092 * 161.51412 * 17 16 15 20 20 N 1.31619 * 119.99743 * 157.63710 * 19 17 16 21 21 Si 1.86802 * 120.00043 * 337.63732 * 19 17 16 22 22 H 1.48497 * 109.47025 * 84.53785 * 21 19 17 23 23 H 1.48497 * 109.46667 * 204.53608 * 21 19 17 24 24 H 1.48498 * 109.47052 * 324.53406 * 21 19 17 25 25 C 1.47426 * 108.70019 * 358.93792 * 16 15 13 26 26 C 1.54908 * 104.83304 * 24.12866 * 25 16 15 27 27 H 1.09003 * 111.00321 * 81.10269 * 26 25 16 28 28 O 1.42893 * 111.00477 * 204.91424 * 26 25 16 29 29 C 1.53114 * 109.66956 * 309.21274 * 8 7 6 30 30 C 1.50709 * 128.67593 * 179.84400 * 5 4 3 31 31 H 1.08997 * 109.47140 * 269.99866 * 1 2 3 32 32 H 1.08996 * 109.47019 * 30.00802 * 1 2 3 33 33 H 1.09007 * 109.46626 * 150.00404 * 1 2 3 34 34 H 1.08002 * 126.09685 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.59978 * 77.53024 * 7 6 2 36 36 H 1.08998 * 109.59684 * 317.05857 * 7 6 2 37 37 H 0.97003 * 120.00170 * 0.02562 * 12 10 8 38 38 H 1.09001 * 109.88909 * 100.02113 * 15 13 12 39 39 H 1.09003 * 109.88265 * 338.85659 * 15 13 12 40 40 H 0.97001 * 119.99701 * 180.02562 * 20 19 17 41 41 H 1.09001 * 110.36736 * 142.96984 * 25 16 15 42 42 H 1.09001 * 110.36471 * 265.28896 * 25 16 15 43 43 H 0.96701 * 114.00231 * 298.54733 * 28 26 25 44 44 H 1.08994 * 109.50061 * 189.89201 * 29 8 7 45 45 H 1.09001 * 109.49837 * 309.99732 * 29 8 7 46 46 H 1.09004 * 109.74460 * 315.43515 * 30 5 4 47 47 H 1.08997 * 109.74650 * 76.10082 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0619 0.0000 4 6 3.5602 0.6823 -0.0006 5 6 3.5928 -0.6559 -0.0004 6 7 2.2918 -1.0911 0.0005 7 6 1.8924 -2.5004 0.0046 8 6 3.0931 -3.3501 0.4352 9 1 3.3058 -3.1699 1.4890 10 6 2.7742 -4.8088 0.2306 11 8 1.6957 -5.1368 -0.2166 12 7 3.6876 -5.7488 0.5445 13 6 3.3778 -7.1667 0.3451 14 1 2.7835 -7.3094 -0.5575 15 6 2.6486 -7.7447 1.5761 16 7 3.1760 -9.0987 1.8000 17 6 2.8028 -9.9435 2.8110 18 1 2.3043 -9.5521 3.6855 19 6 3.0649 -11.3031 2.7118 20 7 3.1267 -12.0424 3.7990 21 14 3.3300 -12.0833 1.0353 22 1 4.7486 -11.9150 0.6298 23 1 3.0036 -13.5302 1.1057 24 1 2.4485 -11.4248 0.0380 25 6 4.1738 -9.3959 0.7563 26 6 4.6790 -8.0096 0.2844 27 1 5.4326 -7.6156 0.9662 28 8 5.1846 -8.0759 -1.0505 29 6 4.3179 -2.9740 -0.4032 30 6 4.7919 -1.5688 -0.0040 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8901 -0.5138 34 1 4.4170 1.3397 -0.0011 35 1 1.5769 -2.7939 -0.9965 36 1 1.0712 -2.6455 0.7065 37 1 4.5502 -5.4865 0.9024 38 1 1.5767 -7.7914 1.3841 39 1 2.8440 -7.1218 2.4490 40 1 3.3102 -12.9924 3.7297 41 1 4.9962 -9.9779 1.1723 42 1 3.7090 -9.9321 -0.0711 43 1 5.9403 -8.6700 -1.1558 44 1 5.1176 -3.6919 -0.2215 45 1 4.0522 -2.9843 -1.4603 46 1 5.5254 -1.2105 -0.7264 47 1 5.2374 -1.5956 0.9904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077583911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:30 Heat of formation + Delta-G solvation = 3.109307 kcal Electronic energy + Delta-G solvation = -29186.814888 eV Core-core repulsion = 25178.214646 eV Total energy + Delta-G solvation = -4008.600242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65259 -40.28964 -38.48784 -36.53353 -35.48980 -34.45276 -33.59507 -32.13378 -31.47240 -30.28004 -28.91437 -27.78804 -26.68928 -25.20962 -24.05729 -22.79923 -21.45156 -21.36089 -20.46684 -20.17969 -19.24569 -17.74040 -17.41023 -17.08356 -16.65658 -16.24992 -15.99775 -15.38004 -15.12710 -14.77732 -14.61022 -14.34415 -14.09436 -13.89536 -13.78478 -13.71839 -13.28245 -13.22588 -13.16251 -12.93002 -12.65575 -12.40855 -12.27917 -12.12982 -12.06841 -11.61289 -11.50145 -11.42769 -11.38063 -10.97691 -10.53949 -10.21343 -10.14828 -10.07716 -9.77536 -9.71276 -9.55528 -9.15092 -8.78931 -8.41364 -7.22226 -6.06780 -3.39584 1.79560 2.36944 2.42087 2.90606 3.01188 3.21396 3.40010 3.42466 3.89313 4.07058 4.16327 4.20519 4.26821 4.41311 4.42322 4.66792 4.74143 4.81010 4.83347 4.93452 5.02866 5.08255 5.16746 5.18633 5.20708 5.22723 5.29101 5.32134 5.37832 5.39209 5.55924 5.63715 5.67245 5.69865 5.71314 6.13458 6.16266 6.25123 6.35229 6.47590 6.53872 6.60228 6.96734 7.33390 7.50062 7.67026 7.88336 8.03245 8.18164 8.68442 9.54359 9.98397 11.08752 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.002490 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.704303 B =11240.229600 C =11752.874671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.210 3.790 3 N -0.495 5.495 4 C -0.022 4.022 5 C -0.031 4.031 6 N -0.451 5.451 7 C 0.123 3.877 8 C -0.120 4.120 9 H 0.110 0.890 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.709 5.709 13 C 0.142 3.858 14 H 0.104 0.896 15 C 0.129 3.871 16 N -0.603 5.603 17 C -0.246 4.246 18 H 0.095 0.905 19 C 0.024 3.976 20 N -0.904 5.904 21 Si 0.882 3.118 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.275 1.275 25 C 0.084 3.916 26 C 0.082 3.918 27 H 0.074 0.926 28 O -0.562 6.562 29 C -0.116 4.116 30 C -0.042 4.042 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.169 0.831 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.401 0.599 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.067 0.933 42 H 0.039 0.961 43 H 0.380 0.620 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 21.117 -8.679 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.052 4.052 3 N -0.215 5.215 4 C -0.170 4.170 5 C -0.145 4.145 6 N -0.134 5.134 7 C 0.001 3.999 8 C -0.141 4.141 9 H 0.128 0.872 10 C 0.309 3.691 11 O -0.410 6.410 12 N -0.360 5.360 13 C 0.037 3.963 14 H 0.122 0.878 15 C 0.003 3.997 16 N -0.331 5.331 17 C -0.373 4.373 18 H 0.113 0.887 19 C -0.175 4.175 20 N -0.547 5.547 21 Si 0.712 3.288 22 H -0.213 1.213 23 H -0.227 1.227 24 H -0.200 1.200 25 C -0.042 4.042 26 C 0.022 3.978 27 H 0.092 0.908 28 O -0.367 6.367 29 C -0.154 4.154 30 C -0.081 4.081 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.186 0.814 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.235 0.765 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.227 0.773 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.988 21.746 -8.959 23.708 hybrid contribution 1.314 -1.815 -0.523 2.301 sum 4.302 19.931 -9.482 22.487 Atomic orbital electron populations 1.20198 0.84912 1.04088 1.03612 1.23132 0.95659 0.81062 1.05368 1.70461 1.01995 1.28012 1.21025 1.21808 0.94841 0.91909 1.08424 1.21122 0.85644 0.95465 1.12260 1.45282 1.06390 1.07174 1.54566 1.21710 0.97086 0.76484 1.04652 1.21573 0.96699 0.92524 1.03353 0.87223 1.20072 0.84452 0.86892 0.77648 1.90749 1.23175 1.82602 1.44514 1.45881 1.18308 1.06227 1.65587 1.22033 0.95718 0.78236 1.00303 0.87763 1.21721 0.96919 0.87284 0.93826 1.44585 1.43274 1.13859 1.31420 1.18638 1.36685 0.87450 0.94509 0.88715 1.25018 0.99734 0.95858 0.96894 1.69832 1.51146 1.06934 1.26805 0.87005 0.77824 0.77987 0.85968 1.21315 1.22746 1.20050 1.22635 0.93897 0.94687 0.92991 1.23283 0.94313 0.96814 0.83387 0.90831 1.86457 1.52631 1.69269 1.28354 1.21704 0.96166 0.97293 1.00274 1.20232 0.93061 0.91653 1.03125 0.90111 0.89179 0.90699 0.81422 0.88466 0.88250 0.76468 0.93804 0.94174 0.92518 0.91538 0.94345 0.77272 0.89696 0.90503 0.89012 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.24 36.00 0.37 -0.16 16 2 C 0.21 2.31 7.94 -155.75 -1.24 1.08 16 3 N -0.50 -6.31 11.27 -11.02 -0.12 -6.44 16 4 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 5 C -0.03 -0.30 6.57 -81.73 -0.54 -0.83 16 6 N -0.45 -4.57 3.13 -109.43 -0.34 -4.92 16 7 C 0.12 1.14 5.31 -3.91 -0.02 1.12 16 8 C -0.12 -1.02 2.52 -91.56 -0.23 -1.25 16 9 H 0.11 0.83 8.11 -51.93 -0.42 0.41 16 10 C 0.52 6.33 7.15 -10.98 -0.08 6.25 16 11 O -0.53 -8.51 15.57 5.56 0.09 -8.42 16 12 N -0.71 -8.39 4.95 -52.03 -0.26 -8.65 16 13 C 0.14 2.25 2.97 -66.10 -0.20 2.05 16 14 H 0.10 1.86 7.70 -51.93 -0.40 1.46 16 15 C 0.13 2.49 6.99 -3.07 -0.02 2.47 16 16 N -0.60 -13.93 3.21 -170.07 -0.55 -14.48 16 17 C -0.25 -6.76 10.57 -15.06 -0.16 -6.92 16 18 H 0.10 2.76 8.06 -52.49 -0.42 2.34 16 19 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 20 N -0.90 -27.08 13.97 55.49 0.78 -26.30 16 21 Si 0.88 21.81 24.27 -169.99 -4.13 17.69 16 22 H -0.29 -6.62 6.49 56.52 0.37 -6.25 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.27 -6.83 6.66 56.52 0.38 -6.46 16 25 C 0.08 1.69 4.42 -2.53 -0.01 1.68 16 26 C 0.08 1.25 4.04 -24.59 -0.10 1.15 16 27 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 28 O -0.56 -7.67 13.47 -35.23 -0.47 -8.14 16 29 C -0.12 -0.81 5.23 -26.37 -0.14 -0.94 16 30 C -0.04 -0.27 6.31 -27.58 -0.17 -0.45 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 7.95 -51.92 -0.41 0.07 16 34 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.10 0.97 7.81 -51.93 -0.41 0.56 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.40 3.56 7.85 -40.82 -0.32 3.24 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.75 8.03 -51.93 -0.42 0.33 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 41 H 0.07 1.38 6.63 -51.93 -0.34 1.04 16 42 H 0.04 0.84 5.58 -51.93 -0.29 0.55 16 43 H 0.38 3.65 9.11 45.56 0.42 4.07 16 44 H 0.08 0.48 7.30 -51.93 -0.38 0.10 16 45 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -35.49 373.11 -8.62 -44.11 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.39 Total: 4.56 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.84 Total: 5.37 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.49 Total: -60.78 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.39 Total: -16.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.13 Total: 17.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.49 -8.62 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077583911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.220 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds