Wall clock time and date at job start Tue Mar 31 2020 19:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31890 * 118.95148 * 2 1 4 4 C 1.32133 * 120.96542 * 180.02562 * 3 2 1 5 5 C 1.39968 * 118.92222 * 359.97438 * 4 3 2 6 6 C 1.47837 * 120.93814 * 179.97438 * 5 4 3 7 7 O 1.21547 * 120.00036 * 216.96527 * 6 5 4 8 8 N 1.34774 * 120.00075 * 36.96546 * 6 5 4 9 9 C 1.46491 * 120.00259 * 180.02562 * 8 6 5 10 10 H 1.09007 * 110.64343 * 36.68691 * 9 8 6 11 11 C 1.54329 * 110.72322 * 273.54739 * 9 8 6 12 12 N 1.47015 * 107.27067 * 219.44410 * 11 9 8 13 13 C 1.36937 * 125.64795 * 178.97413 * 12 11 9 14 14 H 1.07998 * 120.00130 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00229 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99827 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46880 * 60.00542 * 17 15 13 19 19 H 1.48502 * 109.47340 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47497 * 300.00686 * 17 15 13 21 21 C 1.47423 * 108.70585 * 358.93709 * 12 11 9 22 22 C 1.54906 * 104.83226 * 24.12988 * 21 12 11 23 23 H 1.08999 * 111.00326 * 81.06681 * 22 21 12 24 24 O 1.42904 * 111.00638 * 204.91643 * 22 21 12 25 25 C 1.39930 * 118.12514 * 359.97438 * 5 4 3 26 26 C 1.50699 * 120.53802 * 179.97438 * 25 5 4 27 27 C 1.53002 * 109.46998 * 129.67978 * 26 25 5 28 28 C 1.53000 * 109.47131 * 249.67428 * 26 25 5 29 29 N 1.31860 * 118.95131 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46947 * 269.98040 * 1 2 3 31 31 H 1.08995 * 109.46848 * 29.98250 * 1 2 3 32 32 H 1.08997 * 109.46755 * 149.98647 * 1 2 3 33 33 H 1.07996 * 120.53517 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99950 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.87557 * 338.85585 * 11 9 8 36 36 H 1.09001 * 109.88249 * 100.02279 * 11 9 8 37 37 H 0.97000 * 119.99393 * 179.97438 * 16 15 13 38 38 H 1.09001 * 110.36923 * 142.96925 * 21 12 11 39 39 H 1.09002 * 110.36714 * 265.18036 * 21 12 11 40 40 H 0.96697 * 113.99749 * 292.19904 * 24 22 21 41 41 H 1.08991 * 109.47385 * 9.67891 * 26 25 5 42 42 H 1.09010 * 109.46778 * 299.99898 * 27 26 25 43 43 H 1.08994 * 109.47203 * 59.99228 * 27 26 25 44 44 H 1.09000 * 109.47083 * 180.02562 * 27 26 25 45 45 H 1.08996 * 109.46997 * 60.00130 * 28 26 25 46 46 H 1.08998 * 109.47100 * 180.02562 * 28 26 25 47 47 H 1.09000 * 109.47519 * 300.00436 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4660 1.2005 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6639 -0.0001 -0.0016 7 8 6.2711 -0.8415 -0.6347 8 7 6.3383 0.9328 0.6993 9 6 7.8033 0.9331 0.6978 10 1 8.1866 0.6458 -0.2814 11 6 8.3507 -0.0042 1.7948 12 7 9.5196 0.6583 2.3915 13 6 10.2806 0.1632 3.4167 14 1 10.0381 -0.7930 3.8562 15 6 11.3637 0.8904 3.8910 16 7 11.6590 2.0560 3.3556 17 14 12.4014 0.2153 5.2899 18 1 12.9924 -1.0854 4.8848 19 1 13.4885 1.1757 5.6080 20 1 11.5480 0.0192 6.4893 21 6 9.7374 1.9435 1.7029 22 6 8.3524 2.3212 1.1209 23 1 7.7194 2.7761 1.8827 24 8 8.4900 3.1840 -0.0100 25 6 3.4661 -1.2003 0.0006 26 6 4.1857 -2.5243 0.0001 27 6 3.6212 -3.4120 1.1111 28 6 3.9875 -3.2120 -1.3522 29 7 2.1453 -1.1538 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8899 -0.5140 33 1 3.9816 2.1494 -0.0001 34 1 5.8537 1.6040 1.2048 35 1 7.5885 -0.1680 2.5565 36 1 8.6485 -0.9559 1.3546 37 1 12.4157 2.5642 3.6873 38 1 10.0708 2.7018 2.4114 39 1 10.4679 1.8260 0.9025 40 1 8.8301 4.0632 0.2052 41 1 5.2494 -2.3599 0.1716 42 1 3.7625 -2.9220 2.0746 43 1 2.5575 -3.5764 0.9397 44 1 4.1420 -4.3695 1.1111 45 1 4.3895 -2.5797 -2.1437 46 1 4.5076 -4.1699 -1.3524 47 1 2.9237 -3.3765 -1.5238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077774334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:38 Heat of formation + Delta-G solvation = -13.610086 kcal Electronic energy + Delta-G solvation = -29341.262389 eV Core-core repulsion = 25331.937139 eV Total energy + Delta-G solvation = -4009.325250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63257 -39.61471 -37.90795 -36.29947 -35.14480 -34.26473 -33.67182 -32.42276 -31.70390 -29.42039 -28.28399 -27.22547 -26.99266 -25.12447 -24.65136 -23.62625 -21.19958 -20.88033 -20.59263 -20.06415 -18.07917 -17.89379 -17.02644 -16.85539 -16.22783 -15.79784 -15.56996 -15.01185 -14.94154 -14.48094 -14.29856 -14.05166 -13.83608 -13.57179 -13.46271 -13.34654 -12.95777 -12.75227 -12.74073 -12.40093 -12.25690 -12.01964 -11.83536 -11.66586 -11.59822 -11.42544 -11.35458 -11.13584 -10.93799 -10.85723 -10.72298 -10.25163 -9.99770 -9.88990 -9.79590 -9.62004 -9.48599 -9.34740 -8.91827 -8.76446 -6.97804 -5.77031 -3.19671 0.28965 0.78103 2.65221 3.06750 3.35473 3.39898 3.41002 3.45535 3.57993 3.74000 4.06819 4.33614 4.53261 4.54381 4.64201 4.87197 4.95813 5.03908 5.06933 5.18445 5.20638 5.29906 5.36382 5.51111 5.53895 5.56847 5.58426 5.60507 5.74631 5.77778 5.80874 5.92716 5.99469 6.06148 6.10590 6.15351 6.24775 6.35203 6.58854 6.68022 6.80092 7.25237 7.43739 7.51060 7.66489 7.77842 8.02195 8.14571 8.21232 9.08865 9.69298 10.31066 11.27236 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002909 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.185901 B = 9623.174132 C =10412.137335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.331 3.669 3 N -0.525 5.525 4 C 0.186 3.814 5 C -0.243 4.243 6 C 0.568 3.432 7 O -0.520 6.520 8 N -0.705 5.705 9 C 0.142 3.858 10 H 0.103 0.897 11 C 0.130 3.870 12 N -0.600 5.600 13 C -0.224 4.224 14 H 0.080 0.920 15 C -0.010 4.010 16 N -0.924 5.924 17 Si 0.918 3.082 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.284 1.284 21 C 0.130 3.870 22 C 0.067 3.933 23 H 0.062 0.938 24 O -0.566 6.566 25 C 0.243 3.757 26 C -0.063 4.063 27 C -0.140 4.140 28 C -0.131 4.131 29 N -0.515 5.515 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.398 0.602 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.254 0.746 38 H 0.113 0.887 39 H 0.027 0.973 40 H 0.378 0.622 41 H 0.114 0.886 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.911 -1.799 -6.434 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 N -0.240 5.240 4 C 0.019 3.981 5 C -0.250 4.250 6 C 0.353 3.647 7 O -0.397 6.397 8 N -0.355 5.355 9 C 0.037 3.963 10 H 0.121 0.879 11 C 0.003 3.997 12 N -0.327 5.327 13 C -0.352 4.352 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.573 5.573 17 Si 0.748 3.252 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.211 1.211 21 C 0.004 3.996 22 C 0.007 3.993 23 H 0.080 0.920 24 O -0.371 6.371 25 C 0.096 3.904 26 C -0.082 4.082 27 C -0.197 4.197 28 C -0.189 4.189 29 N -0.229 5.229 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.191 0.809 34 H 0.233 0.767 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.045 0.955 40 H 0.226 0.774 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.515 -2.867 -7.080 21.891 hybrid contribution 1.525 0.661 1.260 2.086 sum -18.990 -2.206 -5.820 19.984 Atomic orbital electron populations 1.20615 0.85403 1.04355 1.04105 1.23492 0.98404 0.83392 0.88172 1.68287 1.09606 1.30117 1.15941 1.23484 0.89554 0.97651 0.87405 1.21666 0.96278 0.96468 1.10610 1.17728 0.85604 0.81754 0.79625 1.90777 1.69237 1.37004 1.42713 1.45940 1.07715 1.31820 1.50001 1.22096 0.77280 0.95661 1.01214 0.87893 1.21622 0.90535 0.94788 0.92727 1.44271 1.30803 1.18815 1.38852 1.19054 1.06354 1.02396 1.07429 0.90231 1.24799 0.98584 0.97084 1.00034 1.69718 1.30227 1.13475 1.43864 0.86098 0.79672 0.77872 0.81532 1.21059 1.21489 1.21076 1.22553 0.89771 0.90860 0.96439 1.23637 0.99997 0.88789 0.86881 0.91967 1.86407 1.88532 1.27909 1.34217 1.21876 0.88802 0.95000 0.84751 1.20533 1.00937 0.89029 0.97661 1.21786 1.01767 0.99121 0.97074 1.21662 1.01813 1.00348 0.95046 1.68144 1.09071 1.29885 1.15818 0.89308 0.89413 0.89420 0.80870 0.76732 0.95221 0.94660 0.93497 0.86910 0.95539 0.77442 0.86844 0.92976 0.91573 0.91711 0.92353 0.91585 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.31 36.01 0.37 -0.24 16 2 C 0.33 3.67 7.64 -157.06 -1.20 2.47 16 3 N -0.53 -6.09 10.32 -10.39 -0.11 -6.19 16 4 C 0.19 2.09 10.64 -16.77 -0.18 1.91 16 5 C -0.24 -3.15 5.80 -104.69 -0.61 -3.76 16 6 C 0.57 8.52 7.02 -12.33 -0.09 8.43 16 7 O -0.52 -9.30 14.25 5.32 0.08 -9.22 16 8 N -0.70 -10.14 5.07 -52.98 -0.27 -10.41 16 9 C 0.14 2.54 2.97 -66.10 -0.20 2.35 16 10 H 0.10 2.04 7.69 -51.93 -0.40 1.64 16 11 C 0.13 2.73 6.99 -3.06 -0.02 2.71 16 12 N -0.60 -14.90 3.39 -170.08 -0.58 -15.48 16 13 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 14 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -25.87 10.09 55.49 0.56 -25.31 16 17 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.13 2.98 5.62 -2.53 -0.01 2.97 16 22 C 0.07 1.20 4.04 -24.58 -0.10 1.10 16 23 H 0.06 1.02 8.00 -51.93 -0.42 0.60 16 24 O -0.57 -9.12 13.47 -35.23 -0.47 -9.59 16 25 C 0.24 3.15 5.55 -81.82 -0.45 2.70 16 26 C -0.06 -0.78 2.72 -91.77 -0.25 -1.03 16 27 C -0.14 -1.49 9.02 37.16 0.34 -1.16 16 28 C -0.13 -1.46 9.18 37.16 0.34 -1.12 16 29 N -0.51 -6.25 9.78 -6.67 -0.07 -6.32 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.17 1.48 7.79 -52.49 -0.41 1.07 16 34 H 0.40 4.67 7.87 -40.82 -0.32 4.35 16 35 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.38 4.58 9.12 45.56 0.42 5.00 16 41 H 0.11 1.65 5.32 -51.93 -0.28 1.37 16 42 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.07 0.68 7.92 -51.93 -0.41 0.27 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -32.28 385.68 -8.69 -40.97 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.31 Total: 8.51 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -2.31 Total: 10.71 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.46 Total: -63.71 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.40 Total: -18.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.28 -8.69 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077774334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.364 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds