Wall clock time and date at job start Tue Mar 31 2020 19:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30792 * 125.72160 * 2 1 4 4 C 1.34424 * 109.31773 * 179.90531 * 3 2 1 5 5 C 1.33858 * 107.79979 * 0.02562 * 4 3 2 6 6 N 1.34400 * 125.72505 * 179.97438 * 2 1 3 7 7 C 1.46367 * 128.46353 * 0.19948 * 6 2 1 8 8 C 1.53282 * 108.74934 * 162.62953 * 7 6 2 9 9 H 1.09002 * 109.43441 * 290.74100 * 8 7 6 10 10 C 1.50705 * 109.43026 * 170.83625 * 8 7 6 11 11 O 1.21276 * 120.00011 * 359.90702 * 10 8 7 12 12 N 1.34774 * 119.99930 * 179.90534 * 10 8 7 13 13 C 1.46494 * 120.00029 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.88521 * 34.30141 * 13 12 10 15 15 C 1.54916 * 111.00309 * 270.41619 * 13 12 10 16 16 N 1.47469 * 104.80611 * 204.94789 * 15 13 12 17 17 C 1.36934 * 125.62265 * 204.06937 * 16 15 13 18 18 H 1.07997 * 120.00724 * 359.97438 * 17 16 15 19 19 C 1.38821 * 119.99880 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99983 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99876 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47041 * 89.99827 * 21 19 17 23 23 H 1.48501 * 109.46859 * 209.99489 * 21 19 17 24 24 H 1.48499 * 109.47310 * 329.99574 * 21 19 17 25 25 C 1.47018 * 108.72698 * 24.07547 * 16 15 13 26 26 C 1.54316 * 107.27053 * 358.97117 * 25 16 15 27 27 H 1.09003 * 110.72066 * 219.44555 * 26 25 16 28 28 O 1.42896 * 110.87484 * 96.24240 * 26 25 16 29 29 C 1.53115 * 109.66667 * 50.79218 * 8 7 6 30 30 C 1.50708 * 128.68006 * 180.08970 * 5 4 3 31 31 H 1.09002 * 109.46827 * 270.04060 * 1 2 3 32 32 H 1.09002 * 109.47005 * 30.03862 * 1 2 3 33 33 H 1.09000 * 109.46743 * 150.04296 * 1 2 3 34 34 H 1.08001 * 126.09835 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.53613 * 42.87380 * 7 6 2 36 36 H 1.09003 * 109.60729 * 282.43463 * 7 6 2 37 37 H 0.97005 * 119.99809 * 359.97438 * 12 10 8 38 38 H 1.08990 * 110.36697 * 323.75676 * 15 13 12 39 39 H 1.09000 * 110.36437 * 86.07944 * 15 13 12 40 40 H 0.96998 * 120.00273 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.87993 * 239.55391 * 25 16 15 42 42 H 1.08994 * 109.88171 * 118.38715 * 25 16 15 43 43 H 0.96702 * 114.00169 * 66.39083 * 28 26 25 44 44 H 1.08997 * 109.50252 * 50.06208 * 29 8 7 45 45 H 1.09003 * 109.49929 * 170.16645 * 29 8 7 46 46 H 1.08998 * 109.74637 * 44.60899 * 30 5 4 47 47 H 1.09007 * 109.74185 * 283.89487 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0619 0.0000 4 6 3.5602 0.6822 0.0021 5 6 3.5928 -0.6560 0.0029 6 7 2.2918 -1.0911 0.0005 7 6 1.8930 -2.4994 -0.0029 8 6 3.0928 -3.3502 -0.4342 9 1 3.3047 -3.1706 -1.4882 10 6 2.7732 -4.8085 -0.2285 11 8 1.6948 -5.1355 0.2198 12 7 3.6857 -5.7493 -0.5427 13 6 3.3747 -7.1669 -0.3433 14 1 2.3190 -7.3631 -0.5301 15 6 3.7828 -7.6303 1.0775 16 7 4.0029 -9.0830 0.9513 17 6 3.9226 -9.9934 1.9710 18 1 3.6802 -9.6645 2.9708 19 6 4.1526 -11.3391 1.7198 20 7 4.4474 -11.7401 0.5013 21 14 4.0422 -12.5811 3.1108 22 1 2.6515 -13.0924 3.2087 23 1 4.9670 -13.7110 2.8399 24 1 4.4205 -11.9274 4.3893 25 6 4.3229 -9.3920 -0.4500 26 6 4.2734 -8.0642 -1.2347 27 1 3.8195 -8.2120 -2.2147 28 8 5.5801 -7.5006 -1.3647 29 6 4.3186 -2.9744 0.4030 30 6 4.7919 -1.5689 0.0070 31 1 -0.3633 0.0007 1.0277 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3633 -0.8904 -0.5132 34 1 4.4171 1.3397 0.0030 35 1 1.0713 -2.6439 -0.7044 36 1 1.5778 -2.7927 0.9985 37 1 4.5481 -5.4877 -0.9017 38 1 4.7014 -7.1334 1.3893 39 1 2.9810 -7.4276 1.7875 40 1 4.6077 -12.6805 0.3256 41 1 3.5877 -10.0885 -0.8531 42 1 5.3213 -9.8244 -0.5155 43 1 6.1813 -8.0234 -1.9127 44 1 4.0541 -2.9850 1.4604 45 1 5.1181 -3.6924 0.2202 46 1 5.5251 -1.2105 0.7294 47 1 5.2371 -1.5964 -0.9877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083731905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:38 Heat of formation + Delta-G solvation = -25.667002 kcal Electronic energy + Delta-G solvation = -29230.842884 eV Core-core repulsion = 25220.994807 eV Total energy + Delta-G solvation = -4009.848077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.39016 -41.25919 -39.61064 -37.29400 -36.45376 -35.53902 -34.31254 -33.62560 -32.24114 -30.94262 -30.19014 -28.79050 -27.36090 -26.61668 -25.37989 -23.51459 -22.47750 -22.09068 -21.63790 -21.13282 -19.95003 -19.23787 -18.42451 -18.19778 -17.48798 -16.96433 -16.80672 -16.72308 -16.16698 -15.78978 -15.50024 -15.36425 -14.99176 -14.86745 -14.70971 -14.59686 -14.46976 -14.19989 -13.95969 -13.91752 -13.77618 -13.22086 -13.18926 -12.91051 -12.85191 -12.79553 -12.74657 -12.29263 -12.18300 -12.12151 -12.02673 -11.90579 -11.85639 -10.97911 -10.94001 -10.84832 -10.77477 -10.51206 -10.12140 -9.12937 -8.95639 -7.90152 -5.25577 1.07275 1.44453 1.46093 1.48609 1.54610 1.61133 2.12444 2.14993 2.47641 3.15372 3.21464 3.29234 3.46175 3.55027 3.60394 3.67726 3.78684 3.84224 3.94894 4.02672 4.17139 4.22837 4.27490 4.30175 4.41609 4.50506 4.56487 4.64808 4.66604 4.70210 4.82449 4.85443 4.92922 5.00212 5.01567 5.06039 5.12750 5.34788 5.42706 5.45723 5.48217 5.64980 5.83805 6.13747 6.24100 6.52086 6.86871 7.05852 7.12181 7.18223 7.70232 8.33016 9.19618 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023432 B = 0.002402 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.639247 B =11652.980791 C =12035.813486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.193 3.807 3 N -0.531 5.531 4 C -0.046 4.046 5 C -0.030 4.030 6 N -0.452 5.452 7 C 0.125 3.875 8 C -0.104 4.104 9 H 0.131 0.869 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.689 5.689 13 C 0.152 3.848 14 H 0.092 0.908 15 C 0.133 3.867 16 N -0.622 5.622 17 C -0.245 4.245 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.272 1.272 25 C 0.159 3.841 26 C 0.093 3.907 27 H 0.092 0.908 28 O -0.563 6.563 29 C -0.115 4.115 30 C -0.035 4.035 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.421 0.579 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.249 0.751 41 H 0.023 0.977 42 H 0.026 0.974 43 H 0.399 0.601 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 20.711 -7.335 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.251 5.251 4 C -0.192 4.192 5 C -0.144 4.144 6 N -0.136 5.136 7 C 0.002 3.998 8 C -0.126 4.126 9 H 0.149 0.851 10 C 0.309 3.691 11 O -0.458 6.458 12 N -0.341 5.341 13 C 0.045 3.955 14 H 0.110 0.890 15 C 0.006 3.994 16 N -0.349 5.349 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.197 1.197 25 C 0.033 3.967 26 C 0.033 3.967 27 H 0.109 0.891 28 O -0.372 6.372 29 C -0.153 4.153 30 C -0.073 4.073 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.202 0.798 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.250 0.750 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.975 21.386 -6.618 22.408 hybrid contribution 0.699 -2.274 0.427 2.417 sum -0.276 19.113 -6.191 20.092 Atomic orbital electron populations 1.20299 0.83138 1.04865 1.04297 1.23688 0.96897 0.81062 1.05263 1.70427 1.03136 1.29216 1.22328 1.22200 0.94866 0.92925 1.09235 1.21625 0.86321 0.95681 1.10820 1.45338 1.06664 1.07195 1.54403 1.21667 0.97621 0.76270 1.04207 1.21478 0.96843 0.89523 1.04731 0.85090 1.20687 0.83640 0.88218 0.76599 1.90734 1.25336 1.83412 1.46351 1.45539 1.19294 1.04560 1.64739 1.21938 0.98540 0.80274 0.94725 0.88990 1.21885 0.97094 0.84657 0.95769 1.44565 1.82512 1.01963 1.05864 1.19392 1.40710 0.88025 0.89306 0.90607 1.25587 1.01902 0.98567 0.99296 1.70100 1.54849 1.14815 1.19865 0.85095 0.77220 0.78470 0.78639 1.21295 1.21633 1.19733 1.21726 0.98575 0.92874 0.83517 1.23105 0.84181 0.91793 0.97624 0.89072 1.86188 1.22725 1.52495 1.75747 1.21708 0.96010 0.98353 0.99233 1.20328 0.92043 0.90091 1.04851 0.89497 0.88699 0.89465 0.79827 0.87674 0.89765 0.74046 0.95517 0.95457 0.94133 0.95839 0.95580 0.75013 0.91958 0.88112 0.87421 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.24 71.24 0.73 -0.27 16 2 C 0.19 4.24 7.94 138.25 1.10 5.33 16 3 N -0.53 -13.63 11.27 -188.77 -2.13 -15.76 16 4 C -0.05 -0.98 11.84 83.30 0.99 0.01 16 5 C -0.03 -0.56 6.57 40.73 0.27 -0.29 16 6 N -0.45 -9.01 3.13 -500.37 -1.57 -10.58 16 7 C 0.12 2.28 5.38 86.50 0.47 2.75 16 8 C -0.10 -1.69 2.52 -11.41 -0.03 -1.72 16 9 H 0.13 1.59 8.11 -2.39 -0.02 1.57 16 10 C 0.52 12.66 7.15 87.66 0.63 13.29 16 11 O -0.58 -19.00 15.53 -3.02 -0.05 -19.05 16 12 N -0.69 -16.76 4.99 -435.96 -2.18 -18.94 16 13 C 0.15 5.03 3.25 46.39 0.15 5.18 16 14 H 0.09 3.33 7.63 -2.39 -0.02 3.32 16 15 C 0.13 5.55 6.93 86.85 0.60 6.15 16 16 N -0.62 -31.54 3.40 -691.90 -2.35 -33.89 16 17 C -0.25 -13.79 10.28 84.04 0.86 -12.93 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 20 N -0.95 -54.88 10.31 21.65 0.22 -54.66 16 21 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.16 7.21 5.14 86.73 0.45 7.66 16 26 C 0.09 2.95 4.19 31.78 0.13 3.08 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 O -0.56 -14.62 12.14 -148.98 -1.81 -16.43 16 29 C -0.11 -1.59 5.23 30.80 0.16 -1.43 16 30 C -0.04 -0.40 6.31 30.02 0.19 -0.22 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.02 7.59 -2.39 -0.02 1.00 16 34 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.11 1.74 7.71 -2.39 -0.02 1.73 16 36 H 0.08 1.79 7.81 -2.39 -0.02 1.77 16 37 H 0.42 8.18 6.89 -92.70 -0.64 7.54 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.02 1.20 7.38 -2.39 -0.02 1.19 16 42 H 0.03 1.31 7.44 -2.39 -0.02 1.29 16 43 H 0.40 7.60 9.12 -74.06 -0.68 6.93 16 44 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 45 H 0.10 1.17 7.31 -2.39 -0.02 1.15 16 46 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -75.98 376.41 -0.98 -76.96 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.31 Total: 21.32 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.16 Total: 23.68 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -8.00 Total: -133.82 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.86 Total: -35.48 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.98 -0.98 -76.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083731905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.296 kcal (2) G-P(sol) polarization free energy of solvation -75.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds