Wall clock time and date at job start Tue Mar 31 2020 19:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30532 * 119.70680 * 2 1 4 4 N 1.28256 * 122.98983 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.03331 * 179.97438 * 4 3 2 6 6 C 1.34685 * 121.93781 * 359.69365 * 4 3 2 7 7 O 1.21903 * 120.46632 * 180.29999 * 6 4 3 8 8 C 1.42317 * 119.06112 * 0.58143 * 6 4 3 9 9 C 1.47417 * 121.30015 * 179.71730 * 8 6 4 10 10 O 1.21603 * 120.00094 * 78.84423 * 9 8 6 11 11 N 1.34778 * 120.00049 * 258.84941 * 9 8 6 12 12 C 1.46507 * 119.99873 * 5.01094 * 11 9 8 13 13 C 1.46502 * 120.00083 * 185.00838 * 11 9 8 14 14 C 1.53001 * 109.47210 * 263.91342 * 13 11 9 15 15 H 1.09000 * 112.96244 * 294.36683 * 14 13 11 16 16 C 1.53949 * 113.77063 * 66.03876 * 14 13 11 17 17 C 1.53946 * 86.28734 * 138.01962 * 16 14 13 18 18 N 1.47572 * 113.87221 * 162.58512 * 14 13 11 19 19 C 1.36938 * 134.49105 * 41.04963 * 18 14 13 20 20 H 1.08001 * 120.00346 * 340.51565 * 19 18 14 21 21 C 1.38819 * 120.00091 * 160.52101 * 19 18 14 22 22 N 1.31618 * 119.99921 * 165.61569 * 21 19 18 23 23 Si 1.86793 * 119.99700 * 345.61679 * 21 19 18 24 24 H 1.48494 * 109.47140 * 86.65576 * 23 21 19 25 25 H 1.48502 * 109.46982 * 206.65532 * 23 21 19 26 26 H 1.48497 * 109.47319 * 326.65267 * 23 21 19 27 27 C 1.39318 * 117.40601 * 359.44579 * 8 6 4 28 28 C 1.50691 * 120.99517 * 180.29333 * 27 8 6 29 29 H 1.08993 * 109.47072 * 269.97882 * 1 2 3 30 30 H 1.09001 * 109.47159 * 29.98207 * 1 2 3 31 31 H 1.09004 * 109.46566 * 149.98128 * 1 2 3 32 32 H 1.09002 * 109.47064 * 359.97438 * 5 4 3 33 33 H 1.08998 * 109.47579 * 119.99401 * 5 4 3 34 34 H 1.09002 * 109.47061 * 240.00065 * 5 4 3 35 35 H 1.08997 * 109.46548 * 275.15494 * 12 11 9 36 36 H 1.09004 * 109.46989 * 35.15511 * 12 11 9 37 37 H 1.08996 * 109.46689 * 155.15597 * 12 11 9 38 38 H 1.08998 * 109.46651 * 143.91421 * 13 11 9 39 39 H 1.08996 * 109.47322 * 23.91387 * 13 11 9 40 40 H 1.09000 * 113.74212 * 252.36846 * 16 14 13 41 41 H 1.09003 * 113.73677 * 23.56709 * 16 14 13 42 42 H 1.09002 * 113.76742 * 90.70098 * 17 16 14 43 43 H 1.09001 * 113.76783 * 221.97675 * 17 16 14 44 44 H 0.97002 * 119.99598 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47074 * 95.25906 * 28 27 8 46 46 H 1.09000 * 109.47518 * 215.25444 * 28 27 8 47 47 H 1.09005 * 109.47381 * 335.25768 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0708 2.5268 -0.0010 6 6 4.2111 0.1069 0.0051 7 8 5.4259 0.2080 0.0100 8 6 3.5935 -1.1753 -0.0009 9 6 4.3961 -2.4118 -0.0015 10 8 4.8941 -2.8139 1.0325 11 7 4.5779 -3.0967 -1.1479 12 6 4.0719 -2.5562 -2.4122 13 6 5.2816 -4.3815 -1.1300 14 6 6.7539 -4.1617 -1.4833 15 1 6.8984 -3.8134 -2.5060 16 6 7.5284 -3.3436 -0.4340 17 6 8.6737 -4.3514 -0.6399 18 7 7.6325 -5.2865 -1.1082 19 6 7.5248 -6.6503 -1.1699 20 1 6.5527 -7.1116 -1.2620 21 6 8.6652 -7.4398 -1.1141 22 7 8.5604 -8.7323 -0.8886 23 14 10.3485 -6.6678 -1.3589 24 1 10.8530 -6.1578 -0.0587 25 1 11.2885 -7.6879 -1.8889 26 1 10.2421 -5.5440 -2.3237 27 6 2.2010 -1.2164 -0.0004 28 6 1.4634 -2.5304 0.0001 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8899 -0.5142 32 1 3.3030 3.3005 -0.0014 33 1 4.6917 2.6311 0.8887 34 1 4.6911 2.6306 -0.8913 35 1 3.0246 -2.8332 -2.5323 36 1 4.1621 -1.4699 -2.4049 37 1 4.6528 -2.9635 -3.2397 38 1 4.8293 -5.0536 -1.8592 39 1 5.2084 -4.8220 -0.1356 40 1 7.7707 -2.3315 -0.7581 41 1 7.0863 -3.3766 0.5618 42 1 9.3823 -4.0589 -1.4149 43 1 9.1595 -4.6597 0.2859 44 1 9.3573 -9.2840 -0.8499 45 1 1.2038 -2.8010 1.0236 46 1 0.5535 -2.4367 -0.5928 47 1 2.0993 -3.3042 -0.4301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085756030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:52 Heat of formation + Delta-G solvation = 68.689971 kcal Electronic energy + Delta-G solvation = -30060.231661 eV Core-core repulsion = 26054.475210 eV Total energy + Delta-G solvation = -4005.756451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.40884 -39.84855 -38.25018 -37.95422 -36.16054 -35.28405 -32.77123 -32.14323 -30.97872 -28.98766 -28.43652 -28.15279 -26.92742 -26.38010 -24.75379 -22.95680 -22.64796 -22.53232 -19.98560 -19.07272 -18.70677 -17.67373 -17.15371 -16.80216 -16.52367 -16.17242 -15.89491 -15.41701 -15.02027 -14.56614 -14.30600 -14.04943 -13.84209 -13.63940 -13.51635 -13.34371 -13.23126 -13.17501 -12.94656 -12.84929 -12.75813 -12.46215 -12.39668 -12.24892 -12.16733 -11.76148 -11.52550 -11.33462 -11.06956 -10.63118 -10.37484 -10.15468 -10.09743 -9.97570 -9.83132 -9.66433 -9.34130 -8.80515 -8.66205 -8.39625 -6.99715 -5.85110 -3.18859 -0.00374 1.27165 1.80918 2.60309 2.86595 3.13232 3.43632 3.51466 3.53848 3.71122 4.04931 4.14375 4.33080 4.62797 4.73034 4.79207 4.84384 4.87341 4.94507 5.04943 5.09505 5.13147 5.19482 5.22412 5.27682 5.35734 5.39193 5.44757 5.49685 5.51648 5.59216 5.63430 5.78073 5.87393 5.91566 6.02358 6.25652 6.39626 6.52375 6.59414 6.67955 6.70040 7.23924 7.34630 7.38064 7.45133 7.81188 8.21466 8.42509 8.75911 9.72165 10.42257 11.32007 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.003131 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.466971 B = 8941.499807 C = 9759.557577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.060 3.940 3 N -0.216 5.216 4 N -0.345 5.345 5 C 0.085 3.915 6 C 0.495 3.505 7 O -0.509 6.509 8 C -0.197 4.197 9 C 0.585 3.415 10 O -0.508 6.508 11 N -0.600 5.600 12 C 0.082 3.918 13 C 0.118 3.882 14 C 0.128 3.872 15 H 0.046 0.954 16 C -0.141 4.141 17 C 0.098 3.902 18 N -0.613 5.613 19 C -0.227 4.227 20 H 0.096 0.904 21 C 0.018 3.982 22 N -0.920 5.920 23 Si 0.884 3.116 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.272 1.272 27 C 0.001 3.999 28 C -0.131 4.131 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.262 0.738 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 22.760 -1.635 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 N -0.041 5.041 4 N -0.166 5.166 5 C -0.055 4.055 6 C 0.292 3.708 7 O -0.385 6.385 8 C -0.213 4.213 9 C 0.370 3.630 10 O -0.382 6.382 11 N -0.333 5.333 12 C -0.062 4.062 13 C -0.004 4.004 14 C 0.021 3.979 15 H 0.064 0.936 16 C -0.179 4.179 17 C -0.027 4.027 18 N -0.341 5.341 19 C -0.353 4.353 20 H 0.113 0.887 21 C -0.179 4.179 22 N -0.565 5.565 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.197 1.197 27 C -0.006 4.006 28 C -0.188 4.188 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.759 23.136 -1.083 30.444 hybrid contribution 1.463 -0.364 -0.381 1.555 sum -18.296 22.772 -1.464 29.248 Atomic orbital electron populations 1.20601 0.85915 1.04242 1.03850 1.21602 0.97956 0.86620 1.04899 1.70608 0.95209 1.28890 1.09367 1.46613 1.01946 1.09901 1.58124 1.22157 0.98646 0.79988 1.04688 1.17616 0.88132 0.84454 0.80627 1.91017 1.11858 1.85709 1.49888 1.21522 0.93980 0.94835 1.10913 1.17235 0.79656 0.82055 0.84085 1.90845 1.47616 1.67826 1.31921 1.47723 1.56494 1.22481 1.06601 1.21745 0.99227 0.98862 0.86347 1.21804 0.92447 0.81975 1.04219 1.22514 0.90710 0.88725 0.95952 0.93633 1.23616 0.97503 0.96150 1.00597 1.22756 0.93117 0.89520 0.97348 1.46414 1.15912 1.00266 1.71463 1.18702 0.94588 0.77336 1.44677 0.88690 1.24962 0.97612 0.94890 1.00474 1.69757 1.28874 1.04426 1.53464 0.86779 0.85265 0.78039 0.78543 1.21200 1.22769 1.19723 1.21428 0.92147 0.97317 0.89685 1.21105 1.00851 0.92410 1.04404 0.89883 0.90028 0.89584 0.88139 0.89485 0.89469 0.92560 0.92362 0.90048 0.90555 0.88563 0.93036 0.88919 0.94190 0.92693 0.92823 0.88705 0.89181 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.33 9.81 36.00 0.35 0.02 16 2 C 0.06 0.47 6.87 -82.47 -0.57 -0.10 16 3 N -0.22 -2.00 10.71 33.66 0.36 -1.64 16 4 N -0.35 -3.78 3.62 -69.82 -0.25 -4.03 16 5 C 0.09 0.64 10.21 59.85 0.61 1.25 16 6 C 0.49 7.19 7.50 -14.73 -0.11 7.08 16 7 O -0.51 -9.19 16.63 5.01 0.08 -9.11 16 8 C -0.20 -2.70 3.97 -104.19 -0.41 -3.11 16 9 C 0.58 9.76 5.17 -12.52 -0.06 9.70 16 10 O -0.51 -10.60 14.86 5.27 0.08 -10.52 16 11 N -0.60 -9.05 2.46 -182.85 -0.45 -9.50 16 12 C 0.08 0.89 10.08 59.85 0.60 1.50 16 13 C 0.12 2.14 5.35 -4.04 -0.02 2.12 16 14 C 0.13 2.69 4.57 -66.87 -0.31 2.39 16 15 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 16 C -0.14 -3.01 7.26 -25.80 -0.19 -3.20 16 17 C 0.10 2.33 5.84 -2.98 -0.02 2.31 16 18 N -0.61 -15.72 3.30 -170.76 -0.56 -16.28 16 19 C -0.23 -6.62 10.93 -15.06 -0.16 -6.78 16 20 H 0.10 2.87 8.06 -52.49 -0.42 2.45 16 21 C 0.02 0.55 5.50 -17.43 -0.10 0.46 16 22 N -0.92 -29.30 13.97 55.49 0.78 -28.53 16 23 Si 0.88 23.76 25.20 -169.99 -4.28 19.47 16 24 H -0.29 -7.59 6.99 56.52 0.40 -7.19 16 25 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 26 H -0.27 -7.12 6.10 56.52 0.34 -6.78 16 27 C 0.00 0.01 5.97 -103.55 -0.62 -0.61 16 28 C -0.13 -0.92 9.30 36.00 0.33 -0.59 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.17 6.14 -51.93 -0.32 -0.15 16 32 H 0.10 0.47 8.05 -51.93 -0.42 0.06 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 36 H 0.06 0.63 7.21 -51.93 -0.37 0.26 16 37 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 38 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 39 H 0.10 2.00 7.32 -51.93 -0.38 1.62 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 2.13 6.46 -51.93 -0.34 1.80 16 42 H 0.04 0.95 6.57 -51.93 -0.34 0.60 16 43 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 44 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.34 6.30 -51.93 -0.33 0.01 16 47 H 0.08 0.73 6.55 -51.93 -0.34 0.39 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -39.04 378.66 -6.26 -45.29 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.05 Total: -3.31 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.66 Total: 12.44 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.13 Total: -59.97 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: 0.16 Total: -19.63 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.28 Total: 19.47 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.04 -6.26 -45.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085756030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.985 kcal (2) G-P(sol) polarization free energy of solvation -39.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds