Wall clock time and date at job start Tue Mar 31 2020 19:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30532 * 119.70680 * 2 1 4 4 N 1.28256 * 122.98983 * 180.02562 * 3 2 1 5 5 C 1.46502 * 119.03331 * 179.97438 * 4 3 2 6 6 C 1.34685 * 121.93781 * 359.69365 * 4 3 2 7 7 O 1.21903 * 120.46632 * 180.29999 * 6 4 3 8 8 C 1.42317 * 119.06112 * 0.58143 * 6 4 3 9 9 C 1.47417 * 121.30015 * 179.71730 * 8 6 4 10 10 O 1.21603 * 120.00094 * 78.84423 * 9 8 6 11 11 N 1.34778 * 120.00049 * 258.84941 * 9 8 6 12 12 C 1.46507 * 119.99873 * 5.01094 * 11 9 8 13 13 C 1.46502 * 120.00083 * 185.00838 * 11 9 8 14 14 C 1.53001 * 109.47210 * 263.91342 * 13 11 9 15 15 H 1.09000 * 112.96244 * 294.36683 * 14 13 11 16 16 C 1.53949 * 113.77063 * 66.03876 * 14 13 11 17 17 C 1.53946 * 86.28734 * 138.01962 * 16 14 13 18 18 N 1.47572 * 113.87221 * 162.58512 * 14 13 11 19 19 C 1.36938 * 134.49105 * 41.04963 * 18 14 13 20 20 H 1.08001 * 120.00346 * 340.51565 * 19 18 14 21 21 C 1.38819 * 120.00091 * 160.52101 * 19 18 14 22 22 N 1.31618 * 119.99921 * 165.61569 * 21 19 18 23 23 Si 1.86793 * 119.99700 * 345.61679 * 21 19 18 24 24 H 1.48494 * 109.47140 * 86.65576 * 23 21 19 25 25 H 1.48502 * 109.46982 * 206.65532 * 23 21 19 26 26 H 1.48497 * 109.47319 * 326.65267 * 23 21 19 27 27 C 1.39318 * 117.40601 * 359.44579 * 8 6 4 28 28 C 1.50691 * 120.99517 * 180.29333 * 27 8 6 29 29 H 1.08993 * 109.47072 * 269.97882 * 1 2 3 30 30 H 1.09001 * 109.47159 * 29.98207 * 1 2 3 31 31 H 1.09004 * 109.46566 * 149.98128 * 1 2 3 32 32 H 1.09002 * 109.47064 * 359.97438 * 5 4 3 33 33 H 1.08998 * 109.47579 * 119.99401 * 5 4 3 34 34 H 1.09002 * 109.47061 * 240.00065 * 5 4 3 35 35 H 1.08997 * 109.46548 * 275.15494 * 12 11 9 36 36 H 1.09004 * 109.46989 * 35.15511 * 12 11 9 37 37 H 1.08996 * 109.46689 * 155.15597 * 12 11 9 38 38 H 1.08998 * 109.46651 * 143.91421 * 13 11 9 39 39 H 1.08996 * 109.47322 * 23.91387 * 13 11 9 40 40 H 1.09000 * 113.74212 * 252.36846 * 16 14 13 41 41 H 1.09003 * 113.73677 * 23.56709 * 16 14 13 42 42 H 1.09002 * 113.76742 * 90.70098 * 17 16 14 43 43 H 1.09001 * 113.76783 * 221.97675 * 17 16 14 44 44 H 0.97002 * 119.99598 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.47074 * 95.25906 * 28 27 8 46 46 H 1.09000 * 109.47518 * 215.25444 * 28 27 8 47 47 H 1.09005 * 109.47381 * 335.25768 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1338 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0708 2.5268 -0.0010 6 6 4.2111 0.1069 0.0051 7 8 5.4259 0.2080 0.0100 8 6 3.5935 -1.1753 -0.0009 9 6 4.3961 -2.4118 -0.0015 10 8 4.8941 -2.8139 1.0325 11 7 4.5779 -3.0967 -1.1479 12 6 4.0719 -2.5562 -2.4122 13 6 5.2816 -4.3815 -1.1300 14 6 6.7539 -4.1617 -1.4833 15 1 6.8984 -3.8134 -2.5060 16 6 7.5284 -3.3436 -0.4340 17 6 8.6737 -4.3514 -0.6399 18 7 7.6325 -5.2865 -1.1082 19 6 7.5248 -6.6503 -1.1699 20 1 6.5527 -7.1116 -1.2620 21 6 8.6652 -7.4398 -1.1141 22 7 8.5604 -8.7323 -0.8886 23 14 10.3485 -6.6678 -1.3589 24 1 10.8530 -6.1578 -0.0587 25 1 11.2885 -7.6879 -1.8889 26 1 10.2421 -5.5440 -2.3237 27 6 2.2010 -1.2164 -0.0004 28 6 1.4634 -2.5304 0.0001 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8899 -0.5142 32 1 3.3030 3.3005 -0.0014 33 1 4.6917 2.6311 0.8887 34 1 4.6911 2.6306 -0.8913 35 1 3.0246 -2.8332 -2.5323 36 1 4.1621 -1.4699 -2.4049 37 1 4.6528 -2.9635 -3.2397 38 1 4.8293 -5.0536 -1.8592 39 1 5.2084 -4.8220 -0.1356 40 1 7.7707 -2.3315 -0.7581 41 1 7.0863 -3.3766 0.5618 42 1 9.3823 -4.0589 -1.4149 43 1 9.1595 -4.6597 0.2859 44 1 9.3573 -9.2840 -0.8499 45 1 1.2038 -2.8010 1.0236 46 1 0.5535 -2.4367 -0.5928 47 1 2.0993 -3.3042 -0.4301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085756030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:51 Heat of formation + Delta-G solvation = 39.808918 kcal Electronic energy + Delta-G solvation = -30061.484037 eV Core-core repulsion = 26054.475210 eV Total energy + Delta-G solvation = -4007.008828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.26804 -41.16797 -39.72325 -39.17714 -37.02124 -36.58275 -34.42661 -33.55448 -31.64852 -30.57445 -30.06329 -29.08849 -27.86434 -27.21157 -25.85725 -24.95549 -24.12589 -23.33777 -21.29826 -20.77376 -19.63109 -18.88926 -18.56724 -18.06586 -17.63409 -17.42053 -17.27164 -16.84112 -16.63097 -15.65983 -15.42568 -15.16330 -15.10350 -14.86917 -14.58017 -14.54948 -14.16838 -14.09440 -14.04849 -13.85412 -13.77695 -13.68808 -13.47942 -13.43064 -13.13738 -12.90783 -12.82896 -12.61871 -12.57720 -12.34341 -12.07781 -11.92714 -11.86454 -11.45494 -11.31213 -10.98244 -10.93245 -10.76286 -9.81533 -9.55815 -9.09724 -8.16890 -5.47427 -0.85362 0.44427 0.94892 1.29322 1.31835 1.40575 1.49314 1.78677 2.15448 2.40667 2.85224 2.97963 3.12247 3.22809 3.35802 3.65725 3.69107 3.95231 4.11491 4.16528 4.23631 4.25492 4.29215 4.29774 4.33708 4.46974 4.48103 4.57672 4.58657 4.60371 4.64699 4.75111 4.75484 4.79491 4.85489 4.87236 4.92266 4.95632 5.07643 5.12984 5.21831 5.43639 5.46921 5.50804 6.14028 6.23558 6.41145 6.50019 6.98413 7.01252 7.42918 8.25670 9.03781 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.003131 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.466971 B = 8941.499807 C = 9759.557577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.066 3.934 3 N -0.215 5.215 4 N -0.343 5.343 5 C 0.079 3.921 6 C 0.485 3.515 7 O -0.566 6.566 8 C -0.241 4.241 9 C 0.586 3.414 10 O -0.565 6.565 11 N -0.594 5.594 12 C 0.077 3.923 13 C 0.131 3.869 14 C 0.133 3.867 15 H 0.068 0.932 16 C -0.123 4.123 17 C 0.093 3.907 18 N -0.636 5.636 19 C -0.213 4.213 20 H 0.074 0.926 21 C -0.042 4.042 22 N -0.964 5.964 23 Si 0.940 3.060 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.258 1.258 27 C 0.034 3.966 28 C -0.135 4.135 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.261 0.739 45 H 0.105 0.895 46 H 0.135 0.865 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.898 25.217 -3.142 34.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 N -0.040 5.040 4 N -0.162 5.162 5 C -0.060 4.060 6 C 0.284 3.716 7 O -0.447 6.447 8 C -0.257 4.257 9 C 0.373 3.627 10 O -0.443 6.443 11 N -0.326 5.326 12 C -0.065 4.065 13 C 0.007 3.993 14 C 0.027 3.973 15 H 0.086 0.914 16 C -0.162 4.162 17 C -0.032 4.032 18 N -0.364 5.364 19 C -0.340 4.340 20 H 0.091 0.909 21 C -0.235 4.235 22 N -0.612 5.612 23 Si 0.768 3.232 24 H -0.211 1.211 25 H -0.228 1.228 26 H -0.183 1.183 27 C 0.027 3.973 28 C -0.191 4.191 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.153 0.847 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.918 25.681 -2.634 34.520 hybrid contribution 2.146 -1.036 0.119 2.386 sum -20.772 24.644 -2.515 32.328 Atomic orbital electron populations 1.20858 0.82184 1.06198 1.05360 1.22407 0.99944 0.85392 1.02557 1.70782 0.94102 1.29442 1.09627 1.46752 1.02394 1.09994 1.57024 1.22408 0.99675 0.79269 1.04660 1.17813 0.87768 0.85566 0.80458 1.90965 1.13882 1.86551 1.53291 1.21201 0.95349 0.93171 1.15939 1.17689 0.79039 0.82550 0.83424 1.90802 1.50082 1.69473 1.33943 1.47722 1.55667 1.21249 1.07980 1.22019 1.01252 0.98911 0.84270 1.21425 0.91358 0.83852 1.02684 1.22724 0.91717 0.86138 0.96696 0.91428 1.23362 0.96406 0.96497 0.99894 1.22889 0.93615 0.89616 0.97090 1.46527 1.17675 0.99909 1.72283 1.18671 0.93707 0.79195 1.42475 0.90868 1.25580 1.01042 0.95369 1.01521 1.69878 1.29650 1.05841 1.55855 0.85876 0.81162 0.77508 0.78625 1.21087 1.22802 1.18258 1.21846 0.90586 0.99335 0.85527 1.21313 1.01926 0.90202 1.05684 0.88412 0.88769 0.86983 0.84989 0.89972 0.89213 0.89106 0.92185 0.89204 0.88794 0.91943 0.91430 0.90914 0.92874 0.93982 0.92991 0.87679 0.84674 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.19 9.81 71.23 0.70 0.51 16 2 C 0.07 0.81 6.87 43.19 0.30 1.10 16 3 N -0.21 -3.39 10.71 -47.43 -0.51 -3.90 16 4 N -0.34 -7.10 3.62 -493.00 -1.78 -8.88 16 5 C 0.08 1.10 10.21 127.77 1.30 2.41 16 6 C 0.48 14.20 7.50 85.27 0.64 14.84 16 7 O -0.57 -21.35 16.63 -5.00 -0.08 -21.43 16 8 C -0.24 -6.50 3.97 -19.59 -0.08 -6.58 16 9 C 0.59 19.89 5.17 86.66 0.45 20.34 16 10 O -0.56 -24.83 14.86 -4.04 -0.06 -24.89 16 11 N -0.59 -17.61 2.46 -850.67 -2.09 -19.70 16 12 C 0.08 1.51 10.08 127.77 1.29 2.80 16 13 C 0.13 4.75 5.35 86.38 0.46 5.21 16 14 C 0.13 5.54 4.57 45.10 0.21 5.74 16 15 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.12 -5.32 7.26 31.26 0.23 -5.10 16 17 C 0.09 4.39 5.84 86.48 0.51 4.89 16 18 N -0.64 -32.75 3.30 -694.17 -2.29 -35.04 16 19 C -0.21 -12.67 10.93 84.04 0.92 -11.75 16 20 H 0.07 4.58 8.06 -2.91 -0.02 4.55 16 21 C -0.04 -2.56 5.50 84.86 0.47 -2.10 16 22 N -0.96 -63.02 13.97 21.65 0.30 -62.72 16 23 Si 0.94 49.52 25.20 68.60 1.73 51.25 16 24 H -0.28 -14.78 6.99 99.48 0.70 -14.09 16 25 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 26 H -0.26 -12.86 6.10 99.48 0.61 -12.25 16 27 C 0.03 0.57 5.97 -19.17 -0.11 0.45 16 28 C -0.14 -1.41 9.30 71.23 0.66 -0.75 16 29 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.11 -0.29 6.14 -2.39 -0.01 -0.30 16 32 H 0.13 0.93 8.05 -2.39 -0.02 0.91 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.16 7.93 -2.39 -0.02 1.14 16 36 H 0.06 1.19 7.21 -2.38 -0.02 1.18 16 37 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 38 H 0.09 3.06 8.12 -2.39 -0.02 3.04 16 39 H 0.06 2.72 7.32 -2.39 -0.02 2.70 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.07 3.48 6.46 -2.39 -0.02 3.46 16 42 H 0.05 2.41 6.57 -2.39 -0.02 2.40 16 43 H 0.04 2.09 7.35 -2.39 -0.02 2.07 16 44 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 45 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.14 0.20 6.30 -2.39 -0.02 0.19 16 47 H 0.06 0.99 6.55 -2.38 -0.02 0.97 16 Total: -1.00 -90.50 378.66 4.02 -86.48 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.87 Total: 6.81 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 7.93 Total: 32.01 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -6.37 Total: -130.24 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.14 Total: -46.32 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.73 Total: 51.25 kcal Total: -90.50 4.02 -86.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085756030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.289 kcal (2) G-P(sol) polarization free energy of solvation -90.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds