Wall clock time and date at job start Tue Mar 31 2020 19:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31811 * 119.12415 * 2 1 4 4 C 1.32319 * 120.81863 * 179.71492 * 3 2 1 5 5 C 1.38620 * 119.10137 * 0.54484 * 4 3 2 6 6 C 1.38578 * 118.39997 * 359.73133 * 5 4 3 7 7 C 1.50698 * 120.44437 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46499 * 125.02322 * 7 6 5 9 9 C 1.50705 * 109.46578 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00140 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99648 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99876 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46085 * 325.02812 * 12 11 9 14 14 C 1.53038 * 109.46250 * 85.00416 * 12 11 9 15 15 C 1.53189 * 109.31302 * 58.65357 * 14 12 11 16 16 N 1.46919 * 108.77378 * 54.63955 * 15 14 12 17 17 C 1.36935 * 120.63133 * 126.37349 * 16 15 14 18 18 H 1.08004 * 120.00152 * 207.68793 * 17 16 15 19 19 C 1.38817 * 120.00252 * 27.68197 * 17 16 15 20 20 N 1.31618 * 119.99717 * 17.36424 * 19 17 16 21 21 Si 1.86803 * 120.00239 * 197.36609 * 19 17 16 22 22 H 1.48495 * 109.46990 * 89.99614 * 21 19 17 23 23 H 1.48491 * 109.46970 * 210.00053 * 21 19 17 24 24 H 1.48501 * 109.46980 * 329.99921 * 21 19 17 25 25 C 1.46929 * 118.73919 * 306.38523 * 16 15 14 26 26 C 1.53039 * 109.46350 * 205.07192 * 12 11 9 27 27 H 1.08996 * 109.50267 * 181.39282 * 26 12 11 28 28 O 1.42898 * 109.49743 * 61.29179 * 26 12 11 29 29 N 1.31777 * 119.12392 * 180.26324 * 2 1 3 30 30 H 1.09005 * 109.47171 * 269.73140 * 1 2 3 31 31 H 1.09001 * 109.47048 * 149.73424 * 1 2 3 32 32 H 1.09000 * 109.47138 * 29.73343 * 1 2 3 33 33 H 1.07997 * 120.44703 * 180.27280 * 4 3 2 34 34 H 1.07998 * 120.80082 * 179.74833 * 5 4 3 35 35 H 1.09003 * 109.47238 * 245.01959 * 7 6 5 36 36 H 1.08997 * 109.47562 * 5.02664 * 7 6 5 37 37 H 1.08996 * 109.47441 * 299.99682 * 8 7 6 38 38 H 1.09002 * 109.47073 * 60.00421 * 8 7 6 39 39 H 0.96999 * 120.00224 * 0.02562 * 11 9 8 40 40 H 1.09000 * 109.50459 * 178.60897 * 14 12 11 41 41 H 1.08999 * 109.49480 * 298.70226 * 14 12 11 42 42 H 1.08999 * 109.58407 * 174.42919 * 15 14 12 43 43 H 1.09001 * 109.58845 * 294.84854 * 15 14 12 44 44 H 0.97003 * 119.99714 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.58354 * 173.39601 * 25 16 15 46 46 H 1.09001 * 109.58898 * 293.68689 * 25 16 15 47 47 H 0.96700 * 114.00069 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 0.0057 5 6 4.1809 -0.0001 0.0001 6 6 3.4712 -1.1904 -0.0055 7 6 4.1962 -2.5115 -0.0122 8 6 3.7160 -3.3626 1.1651 9 6 4.4405 -4.6841 1.1581 10 8 5.2604 -4.9215 0.2965 11 7 4.1779 -5.6016 2.1098 12 6 4.8825 -6.8859 2.1033 13 1 5.0574 -7.1991 1.0739 14 6 6.2236 -6.7355 2.8252 15 6 5.9758 -6.2625 4.2610 16 7 5.0418 -7.1922 4.9105 17 6 5.3610 -7.7808 6.1050 18 1 4.9435 -8.7434 6.3613 19 6 6.2213 -7.1405 6.9864 20 7 6.4603 -5.8530 6.8542 21 14 7.0398 -8.1062 8.3601 22 1 8.3357 -8.6491 7.8794 23 1 7.2781 -7.2109 9.5206 24 1 6.1562 -9.2263 8.7723 25 6 3.7589 -7.4786 4.2541 26 6 4.0317 -7.9380 2.8183 27 1 4.5661 -8.8878 2.8355 28 8 2.7922 -8.0999 2.1259 29 7 2.1484 -1.1512 -0.0053 30 1 -0.3634 -0.0048 1.0277 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8924 -0.5097 33 1 3.9906 2.1374 0.0101 34 1 5.2608 -0.0002 0.0004 35 1 3.9901 -3.0343 -0.9463 36 1 5.2684 -2.3382 0.0783 37 1 3.9220 -2.8399 2.0992 38 1 2.6437 -3.5361 1.0746 39 1 3.5224 -5.4115 2.7990 40 1 6.7374 -7.6966 2.8423 41 1 6.8383 -6.0032 2.3018 42 1 6.9180 -6.2486 4.8088 43 1 5.5443 -5.2616 4.2467 44 1 7.0612 -5.4055 7.4703 45 1 3.2385 -8.2673 4.7975 46 1 3.1457 -6.5775 4.2414 47 1 2.2011 -8.7530 2.5249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099931246.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:00 Heat of formation + Delta-G solvation = -48.225586 kcal Electronic energy + Delta-G solvation = -28839.353725 eV Core-core repulsion = 24828.527434 eV Total energy + Delta-G solvation = -4010.826290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08262 -41.19887 -39.41418 -36.93866 -36.16180 -35.52892 -34.35415 -33.57588 -32.65957 -31.62681 -30.17874 -29.42319 -27.45944 -26.60432 -24.27967 -23.87485 -23.58689 -22.86606 -21.57894 -20.27641 -18.87824 -18.59480 -18.33503 -17.95775 -17.05123 -16.94137 -16.80308 -16.41370 -16.20052 -16.10165 -15.82213 -15.59900 -15.19986 -15.00070 -14.71384 -14.32657 -14.06855 -13.83626 -13.76022 -13.54351 -13.44401 -13.24621 -13.19502 -13.06287 -12.98206 -12.75936 -12.34883 -12.29840 -12.17653 -11.97372 -11.83982 -11.80954 -11.54036 -11.28790 -11.02728 -10.83138 -10.51266 -10.33410 -10.21796 -9.98516 -8.71305 -7.89496 -5.35186 -0.07943 0.08505 1.47508 1.50014 1.57347 1.69353 2.23741 2.49370 2.74130 2.93793 3.15059 3.17630 3.26808 3.49909 3.66818 3.76365 3.90557 4.06980 4.07380 4.12600 4.15260 4.23298 4.26180 4.39251 4.48814 4.53913 4.58741 4.63054 4.70874 4.72360 4.83672 4.88441 4.96097 4.98169 5.04814 5.08310 5.09131 5.14497 5.42178 5.50040 5.56499 5.63466 5.70796 6.06300 6.35307 6.58914 6.89064 7.12152 7.12452 7.27817 7.81055 8.31919 9.16529 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014296 B = 0.002569 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.176824 B =10897.678621 C =11606.543498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.300 3.700 3 N -0.544 5.544 4 C 0.149 3.851 5 C -0.230 4.230 6 C 0.169 3.831 7 C -0.047 4.047 8 C -0.120 4.120 9 C 0.514 3.486 10 O -0.582 6.582 11 N -0.704 5.704 12 C 0.168 3.832 13 H 0.074 0.926 14 C -0.139 4.139 15 C 0.185 3.815 16 N -0.602 5.602 17 C -0.264 4.264 18 H 0.072 0.928 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.964 3.036 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.267 1.267 25 C 0.119 3.881 26 C 0.095 3.905 27 H 0.069 0.931 28 O -0.570 6.570 29 N -0.536 5.536 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.202 0.798 34 H 0.173 0.827 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.405 0.595 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.005 0.995 44 H 0.249 0.751 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 8.897 -13.287 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 N -0.260 5.260 4 C -0.016 4.016 5 C -0.251 4.251 6 C 0.024 3.976 7 C -0.085 4.085 8 C -0.161 4.161 9 C 0.302 3.698 10 O -0.463 6.463 11 N -0.354 5.354 12 C 0.063 3.937 13 H 0.092 0.908 14 C -0.180 4.180 15 C 0.059 3.941 16 N -0.327 5.327 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.242 4.242 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.192 1.192 25 C -0.008 4.008 26 C 0.034 3.966 27 H 0.087 0.913 28 O -0.378 6.378 29 N -0.252 5.252 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.823 9.244 -14.176 19.085 hybrid contribution 1.171 -0.652 1.691 2.158 sum -7.652 8.591 -12.485 16.977 Atomic orbital electron populations 1.20649 0.84030 1.04791 1.04653 1.23827 0.99489 0.83281 0.90069 1.68327 1.11294 1.30554 1.15810 1.23839 0.89261 1.00030 0.88503 1.23089 1.04394 0.93453 1.04188 1.21857 0.89685 0.96440 0.89658 1.20251 0.99595 0.89587 0.99052 1.21464 1.02097 0.91796 1.00708 1.20992 0.82144 0.86368 0.80308 1.90643 1.36569 1.80312 1.38809 1.45946 1.43067 1.16159 1.30254 1.20678 0.91114 0.82930 0.99007 0.90797 1.22382 0.96201 1.01701 0.97667 1.20486 0.94193 0.90300 0.89074 1.44186 1.14617 1.52507 1.21384 1.19507 1.26013 0.99585 0.94242 0.91083 1.25752 1.02800 0.95733 0.99961 1.70173 1.39028 1.08760 1.39649 0.85311 0.78782 0.78021 0.78579 1.21464 1.22450 1.19174 1.21671 0.88135 0.98758 0.92204 1.22343 0.85381 0.97296 0.91580 0.91341 1.86456 1.29540 1.65959 1.55807 1.68082 1.10170 1.31157 1.15754 0.88767 0.89160 0.88709 0.78160 0.80932 0.89386 0.88407 0.88335 0.87264 0.75845 0.91392 0.92172 0.92827 0.97697 0.94151 0.91401 0.95657 0.75524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.32 71.24 0.74 -0.51 16 2 C 0.30 6.52 7.64 138.75 1.06 7.58 16 3 N -0.54 -11.48 10.33 -187.84 -1.94 -13.42 16 4 C 0.15 2.45 11.31 84.71 0.96 3.41 16 5 C -0.23 -3.90 9.80 22.44 0.22 -3.68 16 6 C 0.17 3.65 6.20 42.56 0.26 3.91 16 7 C -0.05 -1.03 4.94 29.85 0.15 -0.88 16 8 C -0.12 -2.90 5.57 29.85 0.17 -2.74 16 9 C 0.51 16.05 7.79 87.66 0.68 16.73 16 10 O -0.58 -21.53 15.64 -3.02 -0.05 -21.58 16 11 N -0.70 -22.46 4.15 -442.40 -1.84 -24.30 16 12 C 0.17 5.76 2.47 45.02 0.11 5.87 16 13 H 0.07 2.65 7.58 -2.38 -0.02 2.64 16 14 C -0.14 -5.35 5.77 30.67 0.18 -5.17 16 15 C 0.19 8.53 5.05 86.36 0.44 8.97 16 16 N -0.60 -27.88 2.99 -699.09 -2.09 -29.97 16 17 C -0.26 -13.58 9.59 84.03 0.81 -12.78 16 18 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 19 C -0.05 -2.48 4.91 84.86 0.42 -2.07 16 20 N -0.93 -52.91 11.19 21.65 0.24 -52.67 16 21 Si 0.96 43.23 29.59 68.60 2.03 45.26 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.12 4.32 5.84 86.36 0.50 4.82 16 26 C 0.10 2.99 3.36 30.67 0.10 3.09 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 O -0.57 -15.25 13.21 -148.98 -1.97 -17.22 16 29 N -0.54 -12.65 9.94 -176.03 -1.75 -14.40 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.17 1.97 8.01 -2.91 -0.02 1.95 16 35 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.10 2.04 7.90 -2.39 -0.02 2.03 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.11 2.51 7.98 -2.39 -0.02 2.49 16 39 H 0.41 12.43 6.87 -92.71 -0.64 11.80 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 43 H 0.00 0.24 7.74 -2.39 -0.02 0.22 16 44 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 46 H 0.03 0.93 6.65 -2.39 -0.02 0.91 16 47 H 0.39 7.00 9.08 -74.06 -0.67 6.33 16 Total: -1.00 -69.74 384.05 -0.88 -70.63 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: -0.31 Total: 31.12 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 6.79 Total: 26.55 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -7.38 Total: -134.76 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.02 Total: -38.80 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.74 -0.88 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099931246.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.401 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds