Wall clock time and date at job start Tue Mar 31 2020 19:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31819 * 119.12095 * 2 1 4 4 C 1.32318 * 120.81197 * 179.71610 * 3 2 1 5 5 C 1.38619 * 119.10534 * 0.53860 * 4 3 2 6 6 C 1.38571 * 118.39971 * 359.73729 * 5 4 3 7 7 C 1.50702 * 120.44752 * 179.97438 * 6 5 4 8 8 C 1.52987 * 109.47206 * 125.01966 * 7 6 5 9 9 C 1.50702 * 109.47206 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00145 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99922 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45806 * 35.01086 * 12 11 9 14 14 C 1.53037 * 109.46549 * 275.02948 * 12 11 9 15 15 C 1.53185 * 109.31562 * 178.61598 * 14 12 11 16 16 N 1.46921 * 108.77716 * 54.63346 * 15 14 12 17 17 C 1.36937 * 120.63115 * 126.41200 * 16 15 14 18 18 H 1.08003 * 120.00220 * 207.67818 * 17 16 15 19 19 C 1.38812 * 119.99790 * 27.68115 * 17 16 15 20 20 N 1.31617 * 120.00401 * 17.35326 * 19 17 16 21 21 Si 1.86805 * 120.00192 * 197.35549 * 19 17 16 22 22 H 1.48499 * 109.46813 * 59.99524 * 21 19 17 23 23 H 1.48494 * 109.47505 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46865 * 300.00029 * 21 19 17 25 25 C 1.46921 * 118.74014 * 306.39450 * 16 15 14 26 26 C 1.53042 * 109.45700 * 154.97478 * 12 11 9 27 27 H 1.09002 * 109.50197 * 61.44071 * 26 12 11 28 28 O 1.42899 * 109.50223 * 301.33850 * 26 12 11 29 29 N 1.31779 * 119.12482 * 180.26309 * 2 1 3 30 30 H 1.08994 * 109.46986 * 269.73254 * 1 2 3 31 31 H 1.09003 * 109.46837 * 149.73270 * 1 2 3 32 32 H 1.08997 * 109.46878 * 29.73576 * 1 2 3 33 33 H 1.08001 * 120.44230 * 180.27268 * 4 3 2 34 34 H 1.07999 * 120.79938 * 179.75134 * 5 4 3 35 35 H 1.08996 * 109.46791 * 245.02270 * 7 6 5 36 36 H 1.09002 * 109.47037 * 5.01652 * 7 6 5 37 37 H 1.08996 * 109.47493 * 299.99874 * 8 7 6 38 38 H 1.09002 * 109.47379 * 59.99895 * 8 7 6 39 39 H 0.97001 * 120.00275 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.49722 * 298.56754 * 14 12 11 41 41 H 1.09001 * 109.49406 * 58.65978 * 14 12 11 42 42 H 1.08996 * 109.58960 * 174.42847 * 15 14 12 43 43 H 1.08999 * 109.58740 * 294.84937 * 15 14 12 44 44 H 0.97000 * 120.00528 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58899 * 173.39210 * 25 16 15 46 46 H 1.08999 * 109.59165 * 293.67757 * 25 16 15 47 47 H 0.96700 * 114.00437 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4711 1.1906 0.0056 5 6 4.1809 -0.0001 0.0002 6 6 3.4713 -1.1903 -0.0054 7 6 4.1962 -2.5115 -0.0120 8 6 3.7161 -3.3625 1.1652 9 6 4.4405 -4.6840 1.1582 10 8 5.2604 -4.9215 0.2967 11 7 4.1780 -5.6014 2.1099 12 6 4.8818 -6.8863 2.1028 13 1 5.9030 -6.7390 1.7512 14 6 4.1570 -7.8597 1.1704 15 6 4.9150 -9.1904 1.1387 16 7 5.0724 -9.6779 2.5157 17 6 4.6649 -10.9390 2.8603 18 1 4.3596 -11.1497 3.8746 19 6 4.6442 -11.9467 1.9058 20 7 5.3192 -11.8054 0.7847 21 14 3.6584 -13.5036 2.2123 22 1 2.2268 -13.1546 2.3968 23 1 3.7991 -14.4157 1.0491 24 1 4.1650 -14.1776 3.4347 25 6 5.6758 -8.7868 3.5160 26 6 4.9088 -7.4607 3.5210 27 1 3.8884 -7.6317 3.8639 28 8 5.5586 -6.5376 4.3973 29 7 2.1484 -1.1512 -0.0053 30 1 -0.3633 -0.0048 1.0276 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8923 -0.5097 33 1 3.9906 2.1375 0.0100 34 1 5.2609 -0.0001 0.0005 35 1 3.9902 -3.0342 -0.9461 36 1 5.2685 -2.3381 0.0784 37 1 3.9221 -2.8398 2.0992 38 1 2.6438 -3.5359 1.0748 39 1 3.5225 -5.4114 2.7992 40 1 3.1436 -8.0268 1.5356 41 1 4.1174 -7.4394 0.1655 42 1 4.3511 -9.9184 0.5555 43 1 5.8969 -9.0411 0.6896 44 1 5.3044 -12.5093 0.1176 45 1 5.6137 -9.2485 4.5015 46 1 6.7203 -8.6065 3.2621 47 1 5.6121 -6.8375 5.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099931247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:05 Heat of formation + Delta-G solvation = -26.945710 kcal Electronic energy + Delta-G solvation = -28292.733272 eV Core-core repulsion = 24282.829746 eV Total energy + Delta-G solvation = -4009.903526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.41074 -39.78369 -38.02173 -35.44979 -35.34782 -34.27446 -33.72477 -32.15845 -31.57670 -29.96594 -28.87754 -28.54309 -26.29365 -24.86964 -23.47409 -22.48670 -22.15008 -21.55256 -20.12274 -19.41462 -17.92308 -17.36512 -16.95946 -16.62004 -16.22225 -15.86979 -15.68411 -15.45609 -15.30801 -14.84717 -14.22343 -13.94796 -13.82448 -13.64394 -13.42728 -13.20860 -13.12501 -12.88018 -12.72694 -12.55628 -12.28735 -12.26236 -12.05405 -11.57903 -11.47430 -11.14641 -11.12136 -10.86961 -10.79272 -10.68453 -10.35231 -10.28137 -9.95757 -9.82900 -9.74634 -9.68656 -9.53081 -9.38482 -8.74194 -8.45522 -6.78769 -5.85918 -3.30107 0.57686 0.74403 2.85230 3.28656 3.34532 3.40747 3.41253 3.44376 3.58991 3.77271 4.16492 4.35948 4.50647 4.58710 4.72524 4.85735 4.91596 5.00713 5.06089 5.16695 5.20957 5.29012 5.31503 5.42525 5.48003 5.52048 5.55488 5.57769 5.75651 5.78210 5.84824 5.96569 6.11184 6.12204 6.32438 6.47016 6.52860 6.66031 6.71759 6.75938 6.87669 7.28206 7.59438 7.71451 7.75071 7.79896 7.89834 8.36460 8.45638 9.11935 9.74419 10.30232 11.22589 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.002087 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.997422 B =13411.145351 C =13818.184316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.318 3.682 3 N -0.528 5.528 4 C 0.152 3.848 5 C -0.233 4.233 6 C 0.186 3.814 7 C -0.056 4.056 8 C -0.131 4.131 9 C 0.512 3.488 10 O -0.544 6.544 11 N -0.716 5.716 12 C 0.162 3.838 13 H 0.087 0.913 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.005 3.995 20 N -0.899 5.899 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.121 3.879 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.572 6.572 29 N -0.516 5.516 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.396 0.604 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.024 0.976 44 H 0.256 0.744 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 23.596 1.755 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.243 5.243 4 C -0.014 4.014 5 C -0.254 4.254 6 C 0.040 3.960 7 C -0.094 4.094 8 C -0.171 4.171 9 C 0.298 3.702 10 O -0.422 6.422 11 N -0.365 5.365 12 C 0.059 3.941 13 H 0.105 0.895 14 C -0.187 4.187 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.376 6.376 29 N -0.231 5.231 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.185 0.815 34 H 0.167 0.833 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.254 23.628 0.431 24.445 hybrid contribution 0.192 -1.016 1.011 1.446 sum -6.062 22.612 1.442 23.455 Atomic orbital electron populations 1.20578 0.85681 1.04222 1.03946 1.23301 0.98231 0.83347 0.89997 1.68269 1.10224 1.30552 1.15269 1.23233 0.89683 0.98654 0.89792 1.22809 1.03136 0.94120 1.05383 1.21807 0.89556 0.95990 0.88651 1.20368 0.99315 0.89554 1.00213 1.21528 1.02292 0.93610 0.99683 1.20475 0.82749 0.85461 0.81518 1.90711 1.34742 1.79710 1.37042 1.46095 1.43507 1.16894 1.30045 1.20996 0.97368 0.81655 0.94122 0.89480 1.22597 1.00104 0.97844 0.98112 1.20834 0.97256 0.90945 0.86493 1.44037 1.69691 1.12111 1.05366 1.19111 1.37909 0.85400 0.96551 0.91587 1.25072 0.98978 0.97563 0.97806 1.70024 1.40842 1.34023 1.09348 0.86342 0.80274 0.82750 0.77209 1.20951 1.21548 1.20822 1.21523 0.95042 0.89440 0.94683 1.22781 0.95981 0.90351 0.88998 0.92613 1.86475 1.82053 1.46744 1.22317 1.68102 1.09603 1.30499 1.14905 0.89567 0.89486 0.89680 0.81462 0.83334 0.88292 0.88829 0.89270 0.87933 0.77061 0.92374 0.91920 0.88858 0.95825 0.93357 0.92217 0.95339 0.78022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.32 36.01 0.37 -0.23 16 2 C 0.32 3.23 7.64 -157.18 -1.20 2.03 16 3 N -0.53 -5.31 10.34 -10.72 -0.11 -5.42 16 4 C 0.15 1.21 11.31 -17.20 -0.19 1.01 16 5 C -0.23 -1.87 9.80 -39.32 -0.39 -2.26 16 6 C 0.19 1.86 6.20 -82.25 -0.51 1.35 16 7 C -0.06 -0.57 4.94 -27.89 -0.14 -0.71 16 8 C -0.13 -1.37 5.57 -27.89 -0.16 -1.53 16 9 C 0.51 7.48 7.79 -10.99 -0.09 7.39 16 10 O -0.54 -10.05 15.64 5.56 0.09 -9.96 16 11 N -0.72 -10.37 4.92 -53.76 -0.26 -10.63 16 12 C 0.16 2.89 2.12 -67.89 -0.14 2.75 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 14 C -0.15 -2.86 5.65 -26.62 -0.15 -3.01 16 15 C 0.17 4.08 5.31 -3.72 -0.02 4.06 16 16 N -0.59 -14.33 2.99 -172.33 -0.52 -14.84 16 17 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 18 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 19 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 20 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 21 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.12 2.44 6.14 -3.71 -0.02 2.41 16 26 C 0.08 1.34 3.14 -26.61 -0.08 1.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 O -0.57 -8.37 13.16 -35.23 -0.46 -8.83 16 29 N -0.52 -5.65 9.94 -6.99 -0.07 -5.72 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.82 8.01 -52.49 -0.42 0.40 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.03 7.98 -51.93 -0.41 0.61 16 39 H 0.40 4.72 8.60 -40.82 -0.35 4.37 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.37 3.90 9.08 45.56 0.41 4.32 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -33.78 388.27 -9.34 -43.12 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.50 Total: 7.90 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -2.95 Total: 7.50 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.34 Total: -61.76 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.38 Total: -18.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.78 -9.34 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099931247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.178 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds