Wall clock time and date at job start Tue Mar 31 2020 19:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31819 * 119.12095 * 2 1 4 4 C 1.32318 * 120.81197 * 179.71610 * 3 2 1 5 5 C 1.38619 * 119.10534 * 0.53860 * 4 3 2 6 6 C 1.38571 * 118.39971 * 359.73729 * 5 4 3 7 7 C 1.50702 * 120.44752 * 179.97438 * 6 5 4 8 8 C 1.52987 * 109.47206 * 125.01966 * 7 6 5 9 9 C 1.50702 * 109.47206 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00145 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00125 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99922 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.45806 * 35.01086 * 12 11 9 14 14 C 1.53037 * 109.46549 * 275.02948 * 12 11 9 15 15 C 1.53185 * 109.31562 * 178.61598 * 14 12 11 16 16 N 1.46921 * 108.77716 * 54.63346 * 15 14 12 17 17 C 1.36937 * 120.63115 * 126.41200 * 16 15 14 18 18 H 1.08003 * 120.00220 * 207.67818 * 17 16 15 19 19 C 1.38812 * 119.99790 * 27.68115 * 17 16 15 20 20 N 1.31617 * 120.00401 * 17.35326 * 19 17 16 21 21 Si 1.86805 * 120.00192 * 197.35549 * 19 17 16 22 22 H 1.48499 * 109.46813 * 59.99524 * 21 19 17 23 23 H 1.48494 * 109.47505 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46865 * 300.00029 * 21 19 17 25 25 C 1.46921 * 118.74014 * 306.39450 * 16 15 14 26 26 C 1.53042 * 109.45700 * 154.97478 * 12 11 9 27 27 H 1.09002 * 109.50197 * 61.44071 * 26 12 11 28 28 O 1.42899 * 109.50223 * 301.33850 * 26 12 11 29 29 N 1.31779 * 119.12482 * 180.26309 * 2 1 3 30 30 H 1.08994 * 109.46986 * 269.73254 * 1 2 3 31 31 H 1.09003 * 109.46837 * 149.73270 * 1 2 3 32 32 H 1.08997 * 109.46878 * 29.73576 * 1 2 3 33 33 H 1.08001 * 120.44230 * 180.27268 * 4 3 2 34 34 H 1.07999 * 120.79938 * 179.75134 * 5 4 3 35 35 H 1.08996 * 109.46791 * 245.02270 * 7 6 5 36 36 H 1.09002 * 109.47037 * 5.01652 * 7 6 5 37 37 H 1.08996 * 109.47493 * 299.99874 * 8 7 6 38 38 H 1.09002 * 109.47379 * 59.99895 * 8 7 6 39 39 H 0.97001 * 120.00275 * 0.02562 * 11 9 8 40 40 H 1.09005 * 109.49722 * 298.56754 * 14 12 11 41 41 H 1.09001 * 109.49406 * 58.65978 * 14 12 11 42 42 H 1.08996 * 109.58960 * 174.42847 * 15 14 12 43 43 H 1.08999 * 109.58740 * 294.84937 * 15 14 12 44 44 H 0.97000 * 120.00528 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58899 * 173.39210 * 25 16 15 46 46 H 1.08999 * 109.59165 * 293.67757 * 25 16 15 47 47 H 0.96700 * 114.00437 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1516 0.0000 4 6 3.4711 1.1906 0.0056 5 6 4.1809 -0.0001 0.0002 6 6 3.4713 -1.1903 -0.0054 7 6 4.1962 -2.5115 -0.0120 8 6 3.7161 -3.3625 1.1652 9 6 4.4405 -4.6840 1.1582 10 8 5.2604 -4.9215 0.2967 11 7 4.1780 -5.6014 2.1099 12 6 4.8818 -6.8863 2.1028 13 1 5.9030 -6.7390 1.7512 14 6 4.1570 -7.8597 1.1704 15 6 4.9150 -9.1904 1.1387 16 7 5.0724 -9.6779 2.5157 17 6 4.6649 -10.9390 2.8603 18 1 4.3596 -11.1497 3.8746 19 6 4.6442 -11.9467 1.9058 20 7 5.3192 -11.8054 0.7847 21 14 3.6584 -13.5036 2.2123 22 1 2.2268 -13.1546 2.3968 23 1 3.7991 -14.4157 1.0491 24 1 4.1650 -14.1776 3.4347 25 6 5.6758 -8.7868 3.5160 26 6 4.9088 -7.4607 3.5210 27 1 3.8884 -7.6317 3.8639 28 8 5.5586 -6.5376 4.3973 29 7 2.1484 -1.1512 -0.0053 30 1 -0.3633 -0.0048 1.0276 31 1 -0.3633 -0.8876 -0.5180 32 1 -0.3633 0.8923 -0.5097 33 1 3.9906 2.1375 0.0100 34 1 5.2609 -0.0001 0.0005 35 1 3.9902 -3.0342 -0.9461 36 1 5.2685 -2.3381 0.0784 37 1 3.9221 -2.8398 2.0992 38 1 2.6438 -3.5359 1.0748 39 1 3.5225 -5.4114 2.7992 40 1 3.1436 -8.0268 1.5356 41 1 4.1174 -7.4394 0.1655 42 1 4.3511 -9.9184 0.5555 43 1 5.8969 -9.0411 0.6896 44 1 5.3044 -12.5093 0.1176 45 1 5.6137 -9.2485 4.5015 46 1 6.7203 -8.6065 3.2621 47 1 5.6121 -6.8375 5.3150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099931247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:04 Heat of formation + Delta-G solvation = -52.248701 kcal Electronic energy + Delta-G solvation = -28293.830492 eV Core-core repulsion = 24282.829746 eV Total energy + Delta-G solvation = -4011.000746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08151 -41.07722 -39.46306 -36.97525 -36.19664 -35.67060 -34.35210 -33.81620 -32.66556 -31.56785 -30.18767 -29.42698 -27.53133 -26.35027 -24.31984 -23.94160 -23.50893 -22.64308 -21.43715 -20.93552 -18.96817 -18.59406 -18.14084 -18.01046 -17.38956 -16.92273 -16.75896 -16.56027 -16.16186 -16.06741 -15.70693 -15.56395 -15.08134 -14.92488 -14.64735 -14.48557 -14.12553 -13.90305 -13.66862 -13.61790 -13.48066 -13.27140 -13.20289 -13.05838 -12.97049 -12.68409 -12.38927 -12.28873 -12.14217 -12.05775 -11.88572 -11.80274 -11.54004 -11.38578 -11.09509 -10.82074 -10.55897 -10.33072 -10.21510 -10.00040 -8.77340 -7.90605 -5.38058 -0.07741 0.08843 1.48199 1.50934 1.57637 1.68217 2.17088 2.49041 2.73971 2.93585 3.12579 3.16740 3.26424 3.49770 3.63253 3.75280 3.88250 4.04397 4.08569 4.12484 4.16822 4.22207 4.24768 4.39197 4.49343 4.53569 4.58270 4.63215 4.71559 4.72844 4.84223 4.85616 4.96519 4.97548 5.02941 5.08960 5.09460 5.12047 5.37382 5.49874 5.52985 5.59709 5.65297 6.06784 6.33254 6.60441 6.88331 7.09095 7.12882 7.31046 7.77657 8.30225 9.16513 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021402 B = 0.002087 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.997422 B =13411.145351 C =13818.184316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.545 5.545 4 C 0.149 3.851 5 C -0.229 4.229 6 C 0.170 3.830 7 C -0.051 4.051 8 C -0.115 4.115 9 C 0.510 3.490 10 O -0.587 6.587 11 N -0.706 5.706 12 C 0.170 3.830 13 H 0.055 0.945 14 C -0.129 4.129 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.266 4.266 18 H 0.077 0.923 19 C -0.052 4.052 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.117 3.883 26 C 0.103 3.897 27 H 0.073 0.927 28 O -0.570 6.570 29 N -0.536 5.536 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.202 0.798 34 H 0.174 0.826 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.413 0.587 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.062 0.938 43 H -0.009 1.009 44 H 0.251 0.749 45 H 0.075 0.925 46 H 0.011 0.989 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 25.528 3.814 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.261 5.261 4 C -0.016 4.016 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.090 4.090 8 C -0.155 4.155 9 C 0.298 3.702 10 O -0.467 6.467 11 N -0.356 5.356 12 C 0.065 3.935 13 H 0.073 0.927 14 C -0.169 4.169 15 C 0.053 3.947 16 N -0.328 5.328 17 C -0.396 4.396 18 H 0.095 0.905 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.201 1.201 23 H -0.224 1.224 24 H -0.198 1.198 25 C -0.010 4.010 26 C 0.042 3.958 27 H 0.091 0.909 28 O -0.377 6.377 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.009 0.991 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.029 0.971 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.529 25.596 2.563 26.803 hybrid contribution 0.678 -1.540 0.399 1.730 sum -6.851 24.056 2.962 25.187 Atomic orbital electron populations 1.20649 0.84120 1.04672 1.04747 1.23801 0.99426 0.83273 0.90065 1.68335 1.11356 1.30566 1.15818 1.23841 0.89216 1.00052 0.88478 1.23080 1.04387 0.93378 1.04158 1.21823 0.89633 0.96352 0.89699 1.20273 0.99681 0.89744 0.99253 1.21458 1.01972 0.91151 1.00939 1.21206 0.82102 0.86493 0.80417 1.90702 1.36731 1.80650 1.38632 1.45889 1.43488 1.15546 1.30675 1.20601 0.95734 0.82805 0.94406 0.92670 1.22313 1.00003 0.95923 0.98654 1.20552 0.95575 0.92337 0.86259 1.44250 1.70283 1.12338 1.05964 1.19528 1.36955 0.86184 0.96904 0.90541 1.25895 1.00217 1.00821 0.97803 1.70199 1.42740 1.34880 1.10387 0.85286 0.79030 0.78952 0.76835 1.20069 1.22438 1.19830 1.21701 0.94410 0.90709 0.94157 1.22295 0.96204 0.88488 0.88861 0.90907 1.86445 1.81751 1.45761 1.23765 1.68087 1.10187 1.31133 1.15771 0.88498 0.89348 0.88877 0.78176 0.80882 0.90050 0.88384 0.86984 0.87025 0.75035 0.91288 0.92471 0.91934 0.99125 0.94020 0.90669 0.97090 0.75422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.32 71.24 0.74 -0.33 16 2 C 0.30 5.73 7.64 138.75 1.06 6.80 16 3 N -0.55 -10.05 10.34 -187.83 -1.94 -11.99 16 4 C 0.15 2.02 11.31 84.71 0.96 2.98 16 5 C -0.23 -3.16 9.80 22.44 0.22 -2.94 16 6 C 0.17 3.15 6.20 42.56 0.26 3.42 16 7 C -0.05 -0.99 4.94 29.84 0.15 -0.85 16 8 C -0.12 -2.20 5.57 29.84 0.17 -2.04 16 9 C 0.51 14.36 7.79 87.66 0.68 15.04 16 10 O -0.59 -21.88 15.64 -3.03 -0.05 -21.92 16 11 N -0.71 -19.22 4.92 -442.40 -2.18 -21.39 16 12 C 0.17 5.95 2.12 45.02 0.10 6.05 16 13 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 14 C -0.13 -5.09 5.65 30.67 0.17 -4.92 16 15 C 0.18 8.91 5.31 86.36 0.46 9.36 16 16 N -0.60 -29.72 2.99 -699.13 -2.09 -31.81 16 17 C -0.27 -14.13 9.59 84.03 0.81 -13.32 16 18 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 19 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 20 N -0.94 -55.61 11.19 21.65 0.24 -55.37 16 21 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C 0.12 4.63 6.14 86.36 0.53 5.16 16 26 C 0.10 3.24 3.14 30.67 0.10 3.34 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 O -0.57 -14.97 13.16 -148.98 -1.96 -16.93 16 29 N -0.54 -11.11 9.94 -176.02 -1.75 -12.86 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.17 1.42 8.01 -2.91 -0.02 1.40 16 35 H 0.08 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.10 1.78 7.90 -2.39 -0.02 1.76 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 2.00 7.98 -2.39 -0.02 1.98 16 39 H 0.41 8.58 8.60 -92.71 -0.80 7.78 16 40 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.06 3.48 6.04 -2.39 -0.01 3.46 16 43 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.07 2.71 7.93 -2.38 -0.02 2.69 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.40 6.77 9.08 -74.06 -0.67 6.09 16 Total: -1.00 -75.52 388.27 -1.36 -76.88 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.47 Total: 24.16 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 6.81 Total: 25.32 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -7.72 Total: -133.43 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.01 Total: -38.85 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.52 -1.36 -76.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099931247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.632 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds