Wall clock time and date at job start Tue Mar 31 2020 19:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 N 1.31880 * 119.93369 * 2 1 4 4 N 1.28275 * 122.62733 * 179.97438 * 3 2 1 5 5 C 1.32495 * 122.21771 * 0.02562 * 4 3 2 6 6 O 1.35449 * 120.25184 * 180.02562 * 5 4 3 7 7 C 1.40449 * 119.49529 * 359.97438 * 5 4 3 8 8 C 1.47818 * 121.18242 * 179.97438 * 7 5 4 9 9 O 1.21550 * 120.00020 * 89.99434 * 8 7 5 10 10 N 1.34773 * 119.99957 * 270.00176 * 8 7 5 11 11 C 1.46502 * 120.00058 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47463 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47517 * 175.45654 * 12 11 10 14 14 C 1.53002 * 115.54656 * 279.32715 * 13 12 11 15 15 N 1.46501 * 109.47330 * 294.94646 * 14 13 12 16 16 C 1.36934 * 120.00011 * 174.37587 * 15 14 13 17 17 H 1.08003 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00205 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00230 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46992 * 89.99515 * 20 18 16 22 22 H 1.48496 * 109.47426 * 209.99627 * 20 18 16 23 23 H 1.48498 * 109.47327 * 329.99795 * 20 18 16 24 24 C 1.52998 * 117.50013 * 133.61823 * 13 12 11 25 25 C 1.52998 * 117.49739 * 64.99353 * 13 12 11 26 26 C 1.38480 * 119.93416 * 180.26288 * 2 1 3 27 27 C 1.50705 * 121.05927 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47413 * 89.99817 * 1 2 3 29 29 H 1.09001 * 109.47535 * 210.00146 * 1 2 3 30 30 H 1.09003 * 109.47225 * 329.99931 * 1 2 3 31 31 H 0.96703 * 113.99742 * 269.98085 * 6 5 4 32 32 H 0.97001 * 120.00465 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47008 * 300.00026 * 11 10 8 34 34 H 1.09001 * 109.47037 * 60.00043 * 11 10 8 35 35 H 1.09003 * 109.47590 * 295.45892 * 12 11 10 36 36 H 1.09003 * 109.47367 * 55.45718 * 12 11 10 37 37 H 1.08998 * 109.47259 * 54.95147 * 14 13 12 38 38 H 1.08999 * 109.46705 * 174.94915 * 14 13 12 39 39 H 0.97001 * 119.99842 * 354.37396 * 15 14 13 40 40 H 0.97001 * 120.00224 * 179.97438 * 19 18 16 41 41 H 1.09003 * 117.49825 * 0.02562 * 24 13 12 42 42 H 1.09001 * 117.49912 * 145.02150 * 24 13 12 43 43 H 1.08991 * 117.50008 * 214.98184 * 25 13 12 44 44 H 1.09003 * 117.50000 * 0.02562 * 25 13 12 45 45 H 1.08997 * 109.47210 * 270.22374 * 27 26 2 46 46 H 1.09003 * 109.46544 * 30.22745 * 27 26 2 47 47 H 1.09000 * 109.47290 * 150.21756 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4463 1.2032 0.0005 5 6 4.2046 0.1166 0.0005 6 8 5.5546 0.2267 0.0016 7 6 3.5979 -1.1500 0.0006 8 6 4.4078 -2.3866 0.0000 9 8 4.7413 -2.8951 1.0525 10 7 4.7765 -2.9501 -1.1674 11 6 5.5797 -4.1753 -1.1679 12 6 5.8580 -4.6021 -2.6105 13 6 6.7901 -5.8155 -2.6127 14 6 8.2769 -5.5058 -2.4272 15 7 8.7618 -4.7340 -3.5741 16 6 10.0393 -4.2410 -3.5768 17 1 10.6893 -4.4208 -2.7332 18 6 10.4987 -3.5093 -4.6632 19 7 9.7064 -3.2898 -5.6911 20 14 12.2411 -2.8362 -4.6666 21 1 13.1573 -3.8374 -5.2695 22 1 12.2860 -1.5824 -5.4610 23 1 12.6654 -2.5538 -3.2718 24 6 6.4205 -6.9886 -3.5228 25 6 6.2583 -7.1158 -2.0067 26 6 2.1979 -1.2001 -0.0055 27 6 1.4671 -2.5180 -0.0121 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 5.9472 0.2588 -0.8816 32 1 4.5102 -2.5445 -2.0073 33 1 6.5235 -3.9913 -0.6546 34 1 5.0349 -4.9671 -0.6538 35 1 4.9196 -4.8639 -3.0995 36 1 6.3307 -3.7800 -3.1480 37 1 8.4162 -4.9266 -1.5144 38 1 8.8359 -6.4386 -2.3544 39 1 8.1779 -4.5723 -4.3316 40 1 10.0272 -2.7782 -6.4502 41 1 5.5136 -6.8957 -4.1203 42 1 7.2367 -7.5399 -3.9897 43 1 6.9677 -7.7509 -1.4763 44 1 5.2443 -7.1070 -1.6069 45 1 1.2870 -2.8388 1.0139 46 1 0.5146 -2.4026 -0.5293 47 1 2.0712 -3.2659 -0.5259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166519467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:48 Heat of formation + Delta-G solvation = -19.116550 kcal Electronic energy + Delta-G solvation = -28564.097809 eV Core-core repulsion = 24554.533781 eV Total energy + Delta-G solvation = -4009.564028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68117 -40.75773 -39.53300 -38.96034 -36.22815 -36.07222 -35.76464 -33.84434 -32.77908 -31.24000 -29.68689 -29.00741 -27.82809 -26.03810 -24.63436 -24.24306 -23.81274 -22.93212 -21.94608 -20.16180 -20.10078 -19.38083 -19.03122 -18.51872 -17.61944 -17.01733 -16.81206 -16.51590 -16.09241 -15.92856 -15.70130 -15.51338 -15.12585 -14.92964 -14.75926 -14.46057 -14.19436 -14.12395 -13.92729 -13.83178 -13.60195 -13.32943 -13.20240 -13.03819 -12.91235 -12.80956 -12.60162 -12.33144 -12.27179 -12.16083 -11.96886 -11.90407 -11.63643 -11.11174 -11.07817 -10.90537 -10.64522 -10.56282 -10.54151 -10.30033 -8.97380 -7.95666 -5.22528 -0.73878 -0.46117 1.14683 1.46356 1.46413 1.55013 1.78385 2.01794 2.22194 2.53424 2.89657 2.93281 3.21933 3.26796 3.37723 3.55572 3.77530 3.82643 3.85494 3.97175 4.06430 4.07709 4.23200 4.30954 4.40141 4.48325 4.55085 4.62264 4.64427 4.74240 4.77316 4.86012 4.91146 4.95078 4.96744 5.00890 5.09489 5.12499 5.25623 5.28998 5.31201 5.35869 5.39102 5.48963 6.19230 6.24470 6.27149 6.87068 7.34768 7.41285 8.10910 8.36819 9.27309 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.002868 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.416315 B = 9762.142686 C =11356.891862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.063 3.937 3 N -0.231 5.231 4 N -0.286 5.286 5 C 0.279 3.721 6 O -0.483 6.483 7 C -0.163 4.163 8 C 0.580 3.420 9 O -0.559 6.559 10 N -0.700 5.700 11 C 0.132 3.868 12 C -0.077 4.077 13 C -0.139 4.139 14 C 0.186 3.814 15 N -0.734 5.734 16 C -0.244 4.244 17 H 0.068 0.932 18 C -0.069 4.069 19 N -0.964 5.964 20 Si 0.966 3.034 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.274 1.274 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.017 4.017 27 C -0.125 4.125 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.425 0.575 32 H 0.414 0.586 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.017 0.983 38 H 0.011 0.989 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.584 -1.130 8.483 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 N -0.075 5.075 4 N -0.137 5.137 5 C 0.092 3.908 6 O -0.292 6.292 7 C -0.178 4.178 8 C 0.364 3.636 9 O -0.437 6.437 10 N -0.351 5.351 11 C 0.009 3.991 12 C -0.115 4.115 13 C -0.140 4.140 14 C 0.060 3.940 15 N -0.377 5.377 16 C -0.376 4.376 17 H 0.086 0.914 18 C -0.262 4.262 19 N -0.614 5.614 20 Si 0.795 3.205 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.199 1.199 24 C -0.201 4.201 25 C -0.187 4.187 26 C -0.029 4.029 27 C -0.181 4.181 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.106 0.894 31 H 0.288 0.712 32 H 0.251 0.749 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.119 0.881 46 H 0.143 0.857 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.130 0.141 9.890 26.079 hybrid contribution 1.904 -0.496 -1.242 2.326 sum -22.227 -0.355 8.648 23.853 Atomic orbital electron populations 1.20959 0.83251 1.05941 1.05720 1.23468 1.01381 0.88229 0.95230 1.72768 0.99745 1.26174 1.08803 1.73003 1.00424 1.27068 1.13165 1.20974 0.86402 0.88594 0.94825 1.84727 1.13111 1.95228 1.36099 1.21330 0.95844 0.94234 1.06354 1.17729 0.78974 0.82717 0.84203 1.90828 1.56305 1.63923 1.32665 1.45908 1.53370 1.27796 1.08035 1.21328 0.94469 0.85406 0.97869 1.21110 0.99035 0.96571 0.94749 1.21390 0.94152 0.90596 1.07908 1.20248 0.90877 0.93232 0.89651 1.42413 1.12436 1.63499 1.19328 1.19567 0.90889 1.25681 1.01464 0.91390 1.25425 1.01708 1.02298 0.96740 1.69786 1.36931 1.46354 1.08379 0.85253 0.80480 0.77319 0.77402 1.21507 1.22014 1.19950 1.23011 1.03000 1.00460 0.93658 1.23076 1.02940 0.97323 0.95347 1.21539 0.90482 0.99608 0.91261 1.21177 1.01962 0.89732 1.05275 0.87304 0.87086 0.89399 0.71231 0.74923 0.93540 0.89859 0.88705 0.92210 0.96471 0.97138 0.79030 0.94010 0.87153 0.90429 0.88802 0.86319 0.88068 0.85673 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.42 71.23 0.67 0.04 16 2 C 0.06 1.03 6.86 42.61 0.29 1.33 16 3 N -0.23 -5.55 11.40 -47.74 -0.54 -6.09 16 4 N -0.29 -8.07 11.52 -169.56 -1.95 -10.02 16 5 C 0.28 7.43 7.88 85.13 0.67 8.11 16 6 O -0.48 -12.93 13.09 -87.46 -1.14 -14.08 16 7 C -0.16 -3.74 5.69 -19.76 -0.11 -3.86 16 8 C 0.58 14.87 5.62 86.78 0.49 15.36 16 9 O -0.56 -19.10 17.10 -3.87 -0.07 -19.16 16 10 N -0.70 -14.76 5.55 -466.01 -2.59 -17.35 16 11 C 0.13 3.16 5.51 86.38 0.48 3.64 16 12 C -0.08 -1.88 5.24 30.59 0.16 -1.72 16 13 C -0.14 -3.96 1.52 -52.18 -0.08 -4.04 16 14 C 0.19 7.30 6.10 86.38 0.53 7.82 16 15 N -0.73 -36.12 5.30 -343.45 -1.82 -37.94 16 16 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 17 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.96 -57.46 13.06 21.65 0.28 -57.18 16 20 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 24 C -0.16 -4.14 9.90 30.59 0.30 -3.84 16 25 C -0.15 -3.24 9.57 30.59 0.29 -2.94 16 26 C -0.02 -0.28 5.96 -19.36 -0.12 -0.39 16 27 C -0.13 -1.06 8.92 71.24 0.64 -0.43 16 28 H 0.11 0.30 8.14 -2.39 -0.02 0.29 16 29 H 0.11 0.12 6.80 -2.39 -0.02 0.11 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.43 7.68 9.06 -74.05 -0.67 7.00 16 32 H 0.41 6.76 8.46 -92.71 -0.78 5.98 16 33 H 0.05 1.42 7.69 -2.39 -0.02 1.40 16 34 H 0.08 1.79 7.80 -2.39 -0.02 1.77 16 35 H 0.09 1.74 7.94 -2.39 -0.02 1.72 16 36 H 0.06 1.83 7.64 -2.39 -0.02 1.81 16 37 H 0.02 0.71 7.69 -2.39 -0.02 0.69 16 38 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 39 H 0.38 19.44 7.46 -92.71 -0.69 18.75 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.11 2.31 8.08 -2.39 -0.02 2.29 16 42 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.12 1.94 7.98 -2.39 -0.02 1.92 16 45 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.12 0.19 6.83 -2.39 -0.02 0.17 16 47 H 0.08 0.75 7.25 -2.39 -0.02 0.74 16 Total: -1.00 -79.28 397.17 -1.41 -80.69 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -1.12 Total: 30.10 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.51 Total: 2.92 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -6.62 Total: -128.58 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.21 Total: -33.24 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -79.28 -1.41 -80.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166519467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.576 kcal (2) G-P(sol) polarization free energy of solvation -79.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds