Wall clock time and date at job start Tue Mar 31 2020 19:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31879 * 119.93074 * 2 1 4 4 N 1.28282 * 122.62164 * 179.97438 * 3 2 1 5 5 C 1.32485 * 122.22025 * 0.02562 * 4 3 2 6 6 O 1.35439 * 120.25316 * 179.97438 * 5 4 3 7 7 C 1.40457 * 119.49103 * 359.97438 * 5 4 3 8 8 C 1.47829 * 121.17344 * 180.02562 * 7 5 4 9 9 O 1.21550 * 119.99827 * 90.00644 * 8 7 5 10 10 N 1.34781 * 119.99837 * 269.99667 * 8 7 5 11 11 C 1.46918 * 120.62966 * 0.03097 * 10 8 7 12 12 C 1.53199 * 108.77378 * 233.58231 * 11 10 8 13 13 C 1.53047 * 109.30955 * 305.36520 * 12 11 10 14 14 C 1.53038 * 109.53598 * 61.36757 * 13 12 11 15 15 H 1.08994 * 109.52608 * 58.60035 * 14 13 12 16 16 C 1.53004 * 109.49472 * 178.68375 * 14 13 12 17 17 N 1.46504 * 109.46932 * 184.83704 * 16 14 13 18 18 C 1.36934 * 119.99567 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00537 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99987 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00079 * 22 20 18 26 26 C 1.46927 * 120.62647 * 180.02562 * 10 8 7 27 27 C 1.38484 * 119.93017 * 180.27202 * 2 1 3 28 28 C 1.50693 * 121.06017 * 0.03620 * 27 2 1 29 29 H 1.08997 * 109.46658 * 90.00324 * 1 2 3 30 30 H 1.08993 * 109.47349 * 210.00223 * 1 2 3 31 31 H 1.08999 * 109.47130 * 330.00331 * 1 2 3 32 32 H 0.96703 * 114.00664 * 270.02170 * 6 5 4 33 33 H 1.08997 * 109.59316 * 353.36786 * 11 10 8 34 34 H 1.09000 * 109.59273 * 113.65744 * 11 10 8 35 35 H 1.09002 * 109.49647 * 65.31633 * 12 11 10 36 36 H 1.09000 * 109.49788 * 185.38213 * 12 11 10 37 37 H 1.08993 * 109.45887 * 301.34275 * 13 12 11 38 38 H 1.09005 * 109.45837 * 181.38402 * 13 12 11 39 39 H 1.08998 * 109.47524 * 64.83348 * 16 14 13 40 40 H 1.08997 * 109.47093 * 304.83248 * 16 14 13 41 41 H 0.97000 * 119.99825 * 359.97438 * 17 16 14 42 42 H 0.97005 * 119.99717 * 0.02562 * 21 20 18 43 43 H 1.08996 * 109.58795 * 6.63317 * 26 10 8 44 44 H 1.08999 * 109.70325 * 246.26897 * 26 10 8 45 45 H 1.09003 * 109.47093 * 270.23874 * 28 27 2 46 46 H 1.09004 * 109.47644 * 30.23611 * 28 27 2 47 47 H 1.09003 * 109.47535 * 150.23966 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2031 0.0005 5 6 4.2047 0.1167 0.0005 6 8 5.5546 0.2267 0.0005 7 6 3.5978 -1.1500 0.0006 8 6 4.4079 -2.3866 0.0012 9 8 4.7404 -2.8948 1.0541 10 7 4.7776 -2.9506 -1.1658 11 6 4.3837 -2.3478 -2.4464 12 6 3.6861 -3.4126 -3.2987 13 6 4.6005 -4.6324 -3.4330 14 6 4.8715 -5.2238 -2.0478 15 1 3.9276 -5.5030 -1.5798 16 6 5.7590 -6.4624 -2.1861 17 7 5.9233 -7.0944 -0.8746 18 6 6.6822 -8.2274 -0.7509 19 1 7.1594 -8.6555 -1.6201 20 6 6.8384 -8.8259 0.4918 21 7 6.2573 -8.3040 1.5513 22 14 7.8731 -10.3720 0.6606 23 1 7.8819 -10.8093 2.0797 24 1 7.2973 -11.4477 -0.1858 25 1 9.2631 -10.0876 0.2223 26 6 5.5822 -4.1798 -1.1813 27 6 2.1980 -1.2001 -0.0057 28 6 1.4672 -2.5180 -0.0128 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.9467 0.2589 -0.8829 33 1 3.6995 -1.5189 -2.2652 34 1 5.2695 -1.9832 -2.9666 35 1 2.7529 -3.7084 -2.8192 36 1 3.4740 -3.0057 -4.2875 37 1 5.5430 -4.3311 -3.8900 38 1 4.1166 -5.3818 -4.0595 39 1 6.7349 -6.1689 -2.5728 40 1 5.2931 -7.1683 -2.8736 41 1 5.4945 -6.7101 -0.0940 42 1 5.7197 -7.5013 1.4636 43 1 5.6886 -4.5597 -0.1653 44 1 6.5672 -3.9691 -1.5978 45 1 1.2867 -2.8389 1.0132 46 1 0.5147 -2.4026 -0.5302 47 1 2.0714 -3.2659 -0.5263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265619757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:12 Heat of formation + Delta-G solvation = -9.746328 kcal Electronic energy + Delta-G solvation = -29891.116406 eV Core-core repulsion = 25881.958702 eV Total energy + Delta-G solvation = -4009.157704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.93073 -40.13350 -38.19632 -37.79344 -35.42392 -35.12135 -33.40861 -32.74990 -31.92163 -29.73973 -29.06810 -28.37482 -26.23198 -25.46090 -24.01259 -23.23323 -23.03727 -21.71923 -20.57126 -19.46054 -19.31384 -18.48770 -17.57928 -17.20158 -16.69444 -16.09777 -15.34713 -15.11041 -15.01186 -14.72901 -14.62956 -14.37215 -13.95116 -13.78175 -13.58418 -13.49530 -13.34550 -13.28713 -13.15398 -13.09526 -12.65163 -12.63619 -12.54749 -12.43050 -11.86832 -11.55780 -11.33741 -10.98287 -10.78667 -10.73362 -10.62791 -10.54412 -10.35819 -10.15721 -9.95827 -9.81018 -9.65840 -9.15708 -8.91204 -8.80189 -7.00922 -6.08310 -3.09337 0.10264 0.30994 2.22263 2.60404 2.80702 3.02536 3.52027 3.55941 3.66359 3.73812 3.84506 3.96700 4.25353 4.41861 4.44145 4.63279 4.64695 4.74044 4.79434 4.94535 4.97039 5.06549 5.06812 5.10008 5.15320 5.25179 5.32356 5.40010 5.46395 5.50846 5.57255 5.61315 5.64519 5.72574 5.77331 5.87150 5.89138 5.96297 6.18530 6.28612 6.35398 6.59850 6.69526 6.89933 7.11001 7.80485 7.86352 8.23074 8.77099 9.23295 10.09658 10.23771 11.39718 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002950 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.442070 B = 9489.206759 C = 9768.012562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.060 3.940 3 N -0.207 5.207 4 N -0.253 5.253 5 C 0.284 3.716 6 O -0.463 6.463 7 C -0.136 4.136 8 C 0.568 3.432 9 O -0.503 6.503 10 N -0.601 5.601 11 C 0.105 3.895 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.108 4.108 15 H 0.073 0.927 16 C 0.167 3.833 17 N -0.744 5.744 18 C -0.336 4.336 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.940 5.940 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.295 1.295 26 C 0.121 3.879 27 C -0.032 4.032 28 C -0.127 4.127 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.406 0.594 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.367 0.633 42 H 0.256 0.744 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 17.876 -11.876 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 N -0.053 5.053 4 N -0.105 5.105 5 C 0.098 3.902 6 O -0.268 6.268 7 C -0.151 4.151 8 C 0.352 3.648 9 O -0.377 6.377 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.128 4.128 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.390 5.390 18 C -0.467 4.467 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.585 5.585 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C 0.000 4.000 27 C -0.044 4.044 28 C -0.183 4.183 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.265 0.735 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.201 0.799 42 H 0.067 0.933 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.080 17.957 -9.806 23.268 hybrid contribution -0.306 -0.172 -1.433 1.475 sum -11.386 17.785 -11.239 23.922 Atomic orbital electron populations 1.20737 0.86600 1.04630 1.03965 1.22789 0.99438 0.89155 0.97094 1.72844 1.00090 1.24300 1.08043 1.73045 0.99555 1.26265 1.11635 1.20827 0.86303 0.88117 0.94910 1.84800 1.12868 1.95166 1.33976 1.21375 0.94762 0.95551 1.03403 1.17726 0.79699 0.82952 0.84379 1.90918 1.54076 1.62119 1.30582 1.48146 1.53246 1.27173 1.04872 1.21762 0.99676 0.95927 0.84457 1.21907 0.99243 0.96099 0.99749 1.21523 0.99678 0.96744 0.97083 1.21715 1.00223 0.95632 0.95196 0.90832 1.20562 0.95516 0.90580 0.89487 1.42412 1.61478 1.31163 1.03991 1.19989 1.26705 1.03653 0.96339 0.91807 1.25789 1.02401 1.04607 0.91404 1.70876 1.34645 1.23112 1.29909 0.83246 0.75095 0.74768 0.75802 1.21006 1.22302 1.22271 1.21800 0.92860 0.81989 1.03398 1.21130 0.91513 0.98031 0.93683 1.21027 1.00747 0.91917 1.04647 0.89451 0.89702 0.89473 0.73523 0.91066 0.90796 0.91385 0.90535 0.91509 0.91174 0.96092 0.95871 0.79886 0.93287 0.87981 0.90962 0.88700 0.89258 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 9.42 36.01 0.34 -0.22 16 2 C 0.06 0.58 6.86 -82.48 -0.57 0.01 16 3 N -0.21 -2.50 11.40 33.56 0.38 -2.12 16 4 N -0.25 -3.36 11.52 30.73 0.35 -3.01 16 5 C 0.28 3.61 7.88 -16.43 -0.13 3.48 16 6 O -0.46 -5.44 13.09 -18.01 -0.24 -5.68 16 7 C -0.14 -1.70 3.69 -104.45 -0.39 -2.09 16 8 C 0.57 8.49 5.50 -12.33 -0.07 8.42 16 9 O -0.50 -10.10 16.52 5.32 0.09 -10.01 16 10 N -0.60 -7.57 2.97 -173.92 -0.52 -8.09 16 11 C 0.10 0.91 6.34 -3.71 -0.02 0.88 16 12 C -0.13 -1.07 6.08 -26.60 -0.16 -1.23 16 13 C -0.11 -1.18 5.17 -26.69 -0.14 -1.32 16 14 C -0.11 -1.59 2.37 -90.52 -0.21 -1.81 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.17 3.21 5.65 -4.04 -0.02 3.18 16 17 N -0.74 -18.67 5.37 -59.91 -0.32 -19.00 16 18 C -0.34 -9.55 9.99 -15.06 -0.15 -9.70 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 21 N -0.94 -29.73 13.70 55.49 0.76 -28.97 16 22 Si 1.08 26.23 29.92 -169.99 -5.09 21.14 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.12 1.86 5.51 -3.73 -0.02 1.83 16 27 C -0.03 -0.33 5.82 -103.85 -0.60 -0.93 16 28 C -0.13 -1.05 8.92 36.00 0.32 -0.73 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.35 6.80 -51.93 -0.35 -0.01 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.41 2.57 9.06 45.56 0.41 2.98 16 33 H 0.07 0.55 6.22 -51.93 -0.32 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.37 9.60 5.72 -40.82 -0.23 9.37 16 42 H 0.26 8.05 6.77 -40.82 -0.28 7.78 16 43 H 0.10 2.01 6.20 -51.93 -0.32 1.68 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 0.46 6.83 -51.93 -0.35 0.10 16 47 H 0.08 0.78 7.25 -51.93 -0.38 0.40 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -37.73 380.90 -6.86 -44.59 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.11 Total: 7.01 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.92 Total: -1.60 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.66 Total: -61.19 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.15 Total: -15.69 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.09 Total: 21.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.73 -6.86 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265619757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.842 kcal (2) G-P(sol) polarization free energy of solvation -37.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds