Wall clock time and date at job start Tue Mar 31 2020 19:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31879 * 119.93074 * 2 1 4 4 N 1.28282 * 122.62164 * 179.97438 * 3 2 1 5 5 C 1.32485 * 122.22025 * 0.02562 * 4 3 2 6 6 O 1.35439 * 120.25316 * 179.97438 * 5 4 3 7 7 C 1.40457 * 119.49103 * 359.97438 * 5 4 3 8 8 C 1.47829 * 121.17344 * 180.02562 * 7 5 4 9 9 O 1.21550 * 119.99827 * 90.00644 * 8 7 5 10 10 N 1.34781 * 119.99837 * 269.99667 * 8 7 5 11 11 C 1.46918 * 120.62966 * 0.03097 * 10 8 7 12 12 C 1.53199 * 108.77378 * 233.58231 * 11 10 8 13 13 C 1.53047 * 109.30955 * 305.36520 * 12 11 10 14 14 C 1.53038 * 109.53598 * 61.36757 * 13 12 11 15 15 H 1.08994 * 109.52608 * 58.60035 * 14 13 12 16 16 C 1.53004 * 109.49472 * 178.68375 * 14 13 12 17 17 N 1.46504 * 109.46932 * 184.83704 * 16 14 13 18 18 C 1.36934 * 119.99567 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00537 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00134 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00229 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99987 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00079 * 22 20 18 26 26 C 1.46927 * 120.62647 * 180.02562 * 10 8 7 27 27 C 1.38484 * 119.93017 * 180.27202 * 2 1 3 28 28 C 1.50693 * 121.06017 * 0.03620 * 27 2 1 29 29 H 1.08997 * 109.46658 * 90.00324 * 1 2 3 30 30 H 1.08993 * 109.47349 * 210.00223 * 1 2 3 31 31 H 1.08999 * 109.47130 * 330.00331 * 1 2 3 32 32 H 0.96703 * 114.00664 * 270.02170 * 6 5 4 33 33 H 1.08997 * 109.59316 * 353.36786 * 11 10 8 34 34 H 1.09000 * 109.59273 * 113.65744 * 11 10 8 35 35 H 1.09002 * 109.49647 * 65.31633 * 12 11 10 36 36 H 1.09000 * 109.49788 * 185.38213 * 12 11 10 37 37 H 1.08993 * 109.45887 * 301.34275 * 13 12 11 38 38 H 1.09005 * 109.45837 * 181.38402 * 13 12 11 39 39 H 1.08998 * 109.47524 * 64.83348 * 16 14 13 40 40 H 1.08997 * 109.47093 * 304.83248 * 16 14 13 41 41 H 0.97000 * 119.99825 * 359.97438 * 17 16 14 42 42 H 0.97005 * 119.99717 * 0.02562 * 21 20 18 43 43 H 1.08996 * 109.58795 * 6.63317 * 26 10 8 44 44 H 1.08999 * 109.70325 * 246.26897 * 26 10 8 45 45 H 1.09003 * 109.47093 * 270.23874 * 28 27 2 46 46 H 1.09004 * 109.47644 * 30.23611 * 28 27 2 47 47 H 1.09003 * 109.47535 * 150.23966 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2031 0.0005 5 6 4.2047 0.1167 0.0005 6 8 5.5546 0.2267 0.0005 7 6 3.5978 -1.1500 0.0006 8 6 4.4079 -2.3866 0.0012 9 8 4.7404 -2.8948 1.0541 10 7 4.7776 -2.9506 -1.1658 11 6 4.3837 -2.3478 -2.4464 12 6 3.6861 -3.4126 -3.2987 13 6 4.6005 -4.6324 -3.4330 14 6 4.8715 -5.2238 -2.0478 15 1 3.9276 -5.5030 -1.5798 16 6 5.7590 -6.4624 -2.1861 17 7 5.9233 -7.0944 -0.8746 18 6 6.6822 -8.2274 -0.7509 19 1 7.1594 -8.6555 -1.6201 20 6 6.8384 -8.8259 0.4918 21 7 6.2573 -8.3040 1.5513 22 14 7.8731 -10.3720 0.6606 23 1 7.8819 -10.8093 2.0797 24 1 7.2973 -11.4477 -0.1858 25 1 9.2631 -10.0876 0.2223 26 6 5.5822 -4.1798 -1.1813 27 6 2.1980 -1.2001 -0.0057 28 6 1.4672 -2.5180 -0.0128 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.9467 0.2589 -0.8829 33 1 3.6995 -1.5189 -2.2652 34 1 5.2695 -1.9832 -2.9666 35 1 2.7529 -3.7084 -2.8192 36 1 3.4740 -3.0057 -4.2875 37 1 5.5430 -4.3311 -3.8900 38 1 4.1166 -5.3818 -4.0595 39 1 6.7349 -6.1689 -2.5728 40 1 5.2931 -7.1683 -2.8736 41 1 5.4945 -6.7101 -0.0940 42 1 5.7197 -7.5013 1.4636 43 1 5.6886 -4.5597 -0.1653 44 1 6.5672 -3.9691 -1.5978 45 1 1.2867 -2.8389 1.0132 46 1 0.5147 -2.4026 -0.5302 47 1 2.0714 -3.2659 -0.5263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265619757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:11 Heat of formation + Delta-G solvation = -40.800183 kcal Electronic energy + Delta-G solvation = -29892.463002 eV Core-core repulsion = 25881.958702 eV Total energy + Delta-G solvation = -4010.504301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.83944 -41.21204 -39.15699 -38.92588 -36.96141 -36.13501 -34.76198 -33.70873 -33.18418 -31.38214 -29.87222 -29.09484 -27.36971 -26.87600 -25.05506 -24.93430 -23.87006 -22.91195 -21.77345 -20.48678 -20.18970 -19.46821 -19.28588 -18.52266 -17.72355 -17.13673 -16.69914 -16.35797 -15.94190 -15.93353 -15.81864 -15.53180 -15.36227 -15.05680 -14.58544 -14.38451 -14.28589 -14.22129 -14.10963 -13.98806 -13.89302 -13.62775 -13.37525 -13.15746 -12.95735 -12.72566 -12.57070 -12.37028 -12.21338 -12.01171 -11.95237 -11.83762 -11.72203 -11.55331 -11.20023 -11.05102 -10.96008 -10.63492 -10.58993 -9.92271 -9.14163 -8.42162 -5.36551 -0.79327 -0.50711 1.08341 1.55104 1.55861 1.66799 1.82980 1.98484 2.15489 2.70150 2.85392 2.95045 3.17564 3.38001 3.46510 3.54379 3.69481 3.72189 3.77688 3.93121 3.95352 4.05370 4.13214 4.26006 4.28241 4.42030 4.44082 4.58208 4.62518 4.65269 4.66565 4.72768 4.74958 4.79117 4.90692 4.91802 4.93801 5.00620 5.11462 5.23206 5.27035 5.27767 5.40032 5.55974 6.03824 6.23039 6.44365 6.73520 7.05847 7.36678 7.96053 8.08009 9.08834 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.002950 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.442070 B = 9489.206759 C = 9768.012562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.071 3.929 3 N -0.225 5.225 4 N -0.276 5.276 5 C 0.282 3.718 6 O -0.479 6.479 7 C -0.151 4.151 8 C 0.570 3.430 9 O -0.570 6.570 10 N -0.589 5.589 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.105 4.105 14 C -0.093 4.093 15 H 0.057 0.943 16 C 0.163 3.837 17 N -0.760 5.760 18 C -0.335 4.335 19 H 0.071 0.929 20 C -0.108 4.108 21 N -0.975 5.975 22 Si 1.130 2.870 23 H -0.295 1.295 24 H -0.274 1.274 25 H -0.277 1.277 26 C 0.127 3.873 27 C -0.023 4.023 28 C -0.127 4.127 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.425 0.575 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.028 0.972 41 H 0.357 0.643 42 H 0.240 0.760 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.130 0.870 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 18.540 -14.981 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 N -0.070 5.070 4 N -0.126 5.126 5 C 0.096 3.904 6 O -0.288 6.288 7 C -0.166 4.166 8 C 0.357 3.643 9 O -0.449 6.449 10 N -0.320 5.320 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.143 4.143 14 C -0.113 4.113 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.405 5.405 18 C -0.466 4.466 19 H 0.089 0.911 20 C -0.299 4.299 21 N -0.623 5.623 22 Si 0.954 3.046 23 H -0.221 1.221 24 H -0.199 1.199 25 H -0.203 1.203 26 C 0.005 3.995 27 C -0.035 4.035 28 C -0.183 4.183 29 H 0.132 0.868 30 H 0.122 0.878 31 H 0.109 0.891 32 H 0.288 0.712 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.189 0.811 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.148 0.852 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.675 18.674 -13.040 26.066 hybrid contribution 0.147 -0.341 -0.560 0.672 sum -12.528 18.333 -13.600 26.039 Atomic orbital electron populations 1.20965 0.83318 1.05783 1.05920 1.23371 1.01262 0.87873 0.95029 1.72785 0.99750 1.25629 1.08825 1.73008 1.00313 1.26552 1.12775 1.20831 0.86470 0.88032 0.95113 1.84753 1.12859 1.95158 1.35997 1.21220 0.95620 0.94129 1.05656 1.18089 0.79128 0.83242 0.83887 1.90884 1.56802 1.64202 1.32994 1.48149 1.51889 1.25896 1.06104 1.22144 1.01252 0.96466 0.82424 1.21908 0.98265 0.94555 1.01467 1.21510 1.01179 0.97930 0.93720 1.21553 0.98067 0.93660 0.97989 0.92423 1.20785 0.96639 0.92192 0.86734 1.42690 1.61032 1.30826 1.05909 1.20408 1.25761 1.04074 0.96383 0.91149 1.27315 1.03598 1.07598 0.91397 1.71004 1.36667 1.23473 1.31152 0.82622 0.74618 0.71894 0.75495 1.22143 1.19937 1.20260 1.21491 0.93913 0.83480 1.00620 1.21423 0.90605 0.99306 0.92142 1.21136 1.02127 0.90286 1.04759 0.86840 0.87814 0.89084 0.71241 0.89596 0.88424 0.91447 0.86804 0.90218 0.90153 0.95673 0.95413 0.81094 0.94974 0.93122 0.90384 0.89086 0.85167 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.42 71.24 0.67 -0.09 16 2 C 0.07 1.20 6.86 42.61 0.29 1.49 16 3 N -0.23 -5.15 11.40 -47.73 -0.54 -5.70 16 4 N -0.28 -7.20 11.52 -169.58 -1.95 -9.16 16 5 C 0.28 7.17 7.88 85.14 0.67 7.84 16 6 O -0.48 -11.47 13.09 -87.35 -1.14 -12.61 16 7 C -0.15 -3.79 3.69 -19.75 -0.07 -3.86 16 8 C 0.57 17.74 5.50 86.78 0.48 18.22 16 9 O -0.57 -24.77 16.52 -3.87 -0.06 -24.84 16 10 N -0.59 -14.85 2.97 -822.42 -2.44 -17.30 16 11 C 0.10 1.43 6.34 86.37 0.55 1.98 16 12 C -0.12 -1.54 6.08 30.68 0.19 -1.36 16 13 C -0.11 -1.91 5.17 30.62 0.16 -1.75 16 14 C -0.09 -2.72 2.37 -10.73 -0.03 -2.75 16 15 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.16 6.28 5.65 86.38 0.49 6.77 16 17 N -0.76 -39.39 5.37 -343.44 -1.85 -41.23 16 18 C -0.33 -19.30 9.99 84.03 0.84 -18.46 16 19 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 20 C -0.11 -6.50 5.50 84.86 0.47 -6.03 16 21 N -0.97 -64.05 13.70 21.65 0.30 -63.75 16 22 Si 1.13 53.18 29.92 68.60 2.05 55.24 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.13 4.06 5.51 86.35 0.48 4.54 16 27 C -0.02 -0.44 5.82 -19.36 -0.11 -0.55 16 28 C -0.13 -1.87 8.92 71.23 0.64 -1.23 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.42 6.80 -2.39 -0.02 0.40 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.43 5.29 9.06 -74.06 -0.67 4.62 16 33 H 0.09 1.08 6.22 -2.39 -0.01 1.07 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.36 19.86 5.72 -92.71 -0.53 19.33 16 42 H 0.24 16.01 6.77 -92.70 -0.63 15.38 16 43 H 0.05 2.17 6.20 -2.39 -0.01 2.16 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.13 0.81 6.83 -2.38 -0.02 0.79 16 47 H 0.06 1.20 7.25 -2.39 -0.02 1.18 16 Total: -1.00 -88.01 380.90 0.01 -88.00 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.04 Total: 26.60 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.70 Total: 4.75 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -6.49 Total: -137.14 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.21 Total: -37.45 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 2.05 Total: 55.24 kcal Total: -88.01 0.01 -88.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265619757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.201 kcal (2) G-P(sol) polarization free energy of solvation -88.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds