Wall clock time and date at job start Tue Mar 31 2020 19:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29948 * 125.30251 * 2 1 4 4 O 1.41883 * 107.41366 * 179.89303 * 3 2 1 5 5 N 1.41885 * 106.38548 * 0.36793 * 4 3 2 6 6 C 1.29947 * 107.41059 * 359.78263 * 5 4 3 7 7 C 1.50709 * 125.30161 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.46823 * 269.99809 * 7 6 5 9 9 C 1.47658 * 111.00172 * 69.87447 * 8 7 6 10 10 C 1.54524 * 107.05897 * 123.11929 * 9 8 7 11 11 C 1.54886 * 102.59196 * 22.99735 * 10 9 8 12 12 H 1.09002 * 110.41660 * 80.15624 * 11 10 9 13 13 C 1.48276 * 110.99892 * 190.43784 * 8 7 6 14 14 H 1.08996 * 111.35384 * 92.74696 * 13 8 7 15 15 C 1.54910 * 108.80667 * 328.65637 * 13 8 7 16 16 C 1.52887 * 109.57921 * 182.99280 * 15 13 8 17 17 C 1.50351 * 109.30500 * 52.99511 * 16 15 13 18 18 O 1.21277 * 118.80117 * 158.36090 * 17 16 15 19 19 N 1.33347 * 122.39900 * 338.34310 * 17 16 15 20 20 C 1.46501 * 117.28880 * 179.80177 * 19 17 16 21 21 C 1.53001 * 109.46938 * 269.97755 * 20 19 17 22 22 C 1.50698 * 109.47152 * 179.97438 * 21 20 19 23 23 H 1.08002 * 119.99534 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00344 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99732 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00279 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47079 * 90.00158 * 26 24 22 28 28 H 1.48504 * 109.46925 * 210.00228 * 26 24 22 29 29 H 1.48497 * 109.46920 * 330.00122 * 26 24 22 30 30 H 1.09002 * 109.47152 * 269.69226 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.69326 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.69307 * 1 2 3 33 33 H 1.08999 * 109.46992 * 29.99879 * 7 6 5 34 34 H 1.08998 * 109.46957 * 149.99826 * 7 6 5 35 35 H 1.08998 * 109.91757 * 242.47245 * 9 8 7 36 36 H 1.09002 * 109.92125 * 3.77050 * 9 8 7 37 37 H 1.08998 * 110.79063 * 141.27065 * 10 9 8 38 38 H 1.08995 * 110.78989 * 264.53555 * 10 9 8 39 39 H 1.09005 * 109.25669 * 63.03015 * 15 13 8 40 40 H 1.09006 * 109.51797 * 303.11104 * 15 13 8 41 41 H 1.08999 * 109.49647 * 293.05313 * 16 15 13 42 42 H 1.09000 * 109.53179 * 172.96324 * 16 15 13 43 43 H 1.08995 * 109.47101 * 29.97967 * 20 19 17 44 44 H 1.08998 * 109.46903 * 149.97785 * 20 19 17 45 45 H 1.08995 * 109.47398 * 300.00031 * 21 20 19 46 46 H 1.09005 * 109.47006 * 60.00030 * 21 20 19 47 47 H 0.97001 * 120.00097 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 0.0025 5 7 3.5710 -0.7937 -0.0047 6 6 2.3213 -1.1498 -0.0062 7 6 1.8209 -2.5714 -0.0128 8 7 1.6580 -3.0267 -1.3999 9 6 2.9687 -3.1979 -2.0580 10 6 3.0381 -4.6588 -2.5567 11 6 1.5433 -5.0483 -2.6700 12 1 1.1183 -4.6600 -3.5955 13 6 0.9364 -4.3209 -1.4531 14 1 -0.1365 -4.1724 -1.5746 15 6 1.2725 -5.1328 -0.1773 16 6 0.5965 -6.5023 -0.2487 17 6 0.9623 -7.1703 -1.5450 18 8 0.8695 -8.3767 -1.6272 19 7 1.3847 -6.4846 -2.6078 20 6 1.7152 -7.2495 -3.8128 21 6 3.1924 -7.6464 -3.7757 22 6 3.5322 -8.4339 -5.0148 23 1 2.7708 -8.6311 -5.7550 24 6 4.8150 -8.9025 -5.2037 25 7 5.7420 -8.6627 -4.3021 26 14 5.2364 -9.8780 -6.7400 27 1 5.6844 -8.9493 -7.8086 28 1 6.3247 -10.8404 -6.4322 29 1 4.0352 -10.6197 -7.2004 30 1 -0.3633 -0.0055 1.0277 31 1 -0.3633 -0.8872 -0.5186 32 1 -0.3633 0.8928 -0.5091 33 1 2.5398 -3.2120 0.4979 34 1 0.8609 -2.6210 0.5010 35 1 3.0528 -2.5131 -2.9018 36 1 3.7703 -3.0111 -1.3434 37 1 3.5266 -4.7127 -3.5296 38 1 3.5516 -5.2909 -1.8323 39 1 0.9103 -4.5935 0.6979 40 1 2.3521 -5.2637 -0.1028 41 1 -0.4851 -6.3772 -0.1965 42 1 0.9323 -7.1183 0.5855 43 1 1.0986 -8.1474 -3.8536 44 1 1.5253 -6.6380 -4.6948 45 1 3.8089 -6.7486 -3.7349 46 1 3.3822 -8.2580 -2.8936 47 1 6.6447 -8.9921 -4.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273989370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:49 Heat of formation + Delta-G solvation = 67.639705 kcal Electronic energy + Delta-G solvation = -29769.182457 eV Core-core repulsion = 25763.380463 eV Total energy + Delta-G solvation = -4005.801994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85885 -40.96129 -38.67207 -35.69921 -34.65717 -33.96807 -33.21777 -32.82519 -31.07603 -29.37690 -29.09176 -28.31183 -26.66138 -25.11787 -23.73239 -22.71952 -22.03838 -21.54406 -20.73633 -20.23426 -18.10387 -17.15213 -16.92435 -16.58043 -16.46472 -16.12865 -15.73727 -15.35242 -14.87287 -14.68534 -14.63064 -14.48170 -13.96501 -13.79639 -13.72930 -13.46379 -13.16614 -12.80540 -12.74785 -12.62847 -12.40999 -12.08099 -12.05457 -11.98957 -11.88654 -11.63048 -11.42687 -11.30460 -11.08845 -10.97428 -10.93262 -10.90845 -10.74203 -10.58704 -9.86164 -9.84664 -9.38368 -9.05364 -8.80904 -8.35662 -8.12263 -6.02069 -4.04552 0.23278 1.60680 2.34991 2.80390 2.98907 3.25092 3.31210 3.37908 3.41637 3.52608 3.70211 4.20241 4.22374 4.44698 4.46535 4.47663 4.64266 4.65744 4.79939 4.86963 4.93483 4.98140 5.01310 5.14225 5.16207 5.19033 5.27763 5.32059 5.34696 5.48275 5.55721 5.59177 5.70601 5.74088 5.90223 6.11700 6.16030 6.22897 6.45390 6.47004 6.53806 6.64289 6.79598 6.88230 7.62135 7.71760 7.98134 8.00071 8.35681 8.60324 9.01877 9.59222 11.09278 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002950 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.768722 B = 9489.017553 C =10669.578193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.090 3.910 3 N -0.284 5.284 4 O 0.023 5.977 5 N -0.266 5.266 6 C 0.086 3.914 7 C 0.109 3.891 8 N -0.514 5.514 9 C 0.035 3.965 10 C -0.151 4.151 11 C 0.145 3.855 12 H 0.096 0.904 13 C 0.069 3.931 14 H 0.111 0.889 15 C -0.151 4.151 16 C -0.130 4.130 17 C 0.510 3.490 18 O -0.544 6.544 19 N -0.589 5.589 20 C 0.108 3.892 21 C 0.014 3.986 22 C -0.520 4.520 23 H 0.055 0.945 24 C 0.059 3.941 25 N -0.893 5.893 26 Si 0.893 3.107 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 17.129 11.437 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 N -0.029 5.029 4 O -0.117 6.117 5 N -0.010 5.010 6 C -0.098 4.098 7 C -0.020 4.020 8 N -0.238 5.238 9 C -0.093 4.093 10 C -0.190 4.190 11 C 0.039 3.961 12 H 0.113 0.887 13 C -0.039 4.039 14 H 0.129 0.871 15 C -0.190 4.190 16 C -0.171 4.171 17 C 0.297 3.703 18 O -0.422 6.422 19 N -0.320 5.320 20 C -0.013 4.013 21 C -0.024 4.024 22 C -0.559 4.559 23 H 0.074 0.926 24 C -0.142 4.142 25 N -0.532 5.532 26 Si 0.721 3.279 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.198 1.198 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.669 17.718 11.194 24.489 hybrid contribution 0.521 -1.405 -0.420 1.556 sum -12.149 16.313 10.774 23.017 Atomic orbital electron populations 1.20597 0.84147 1.05780 1.04552 1.24556 1.00375 0.88705 0.95649 1.79932 0.89154 1.19767 1.14080 1.93408 1.20234 1.13491 1.84616 1.79971 1.17696 0.91352 1.11951 1.24468 0.89696 0.98950 0.96679 1.20966 1.02194 0.86495 0.92347 1.63910 1.18934 1.27890 1.13114 1.23058 0.89331 0.97474 0.99427 1.23333 0.96988 0.94700 1.03989 1.21517 0.95570 0.80664 0.98353 0.88658 1.23232 0.99345 0.86771 0.94527 0.87105 1.22600 1.02150 0.95935 0.98326 1.21566 1.02447 0.96385 0.96703 1.19973 0.77591 0.87570 0.85169 1.90748 1.53774 1.14302 1.83360 1.47084 1.64451 1.05887 1.14573 1.21968 1.00749 0.95157 0.83413 1.19409 0.88599 0.96764 0.97590 1.21098 0.95230 1.34329 1.05209 0.92628 1.24980 0.96495 0.96202 0.96560 1.69964 1.02624 1.46225 1.34433 0.86582 0.78148 0.79981 0.83229 1.20674 1.21228 1.19816 0.88787 0.88044 0.89291 0.90727 0.87061 0.89864 0.91727 0.88970 0.90287 0.90328 0.90600 0.88553 0.88269 0.90574 0.91983 0.96088 0.96260 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.05 36.01 0.36 0.01 16 2 C 0.09 0.74 7.19 -82.38 -0.59 0.14 16 3 N -0.28 -3.17 12.98 33.74 0.44 -2.73 16 4 O 0.02 0.30 13.71 12.02 0.16 0.47 16 5 N -0.27 -3.18 12.47 33.74 0.42 -2.76 16 6 C 0.09 0.77 6.14 -82.38 -0.51 0.26 16 7 C 0.11 0.74 3.53 -4.97 -0.02 0.73 16 8 N -0.51 -4.30 5.15 -223.40 -1.15 -5.45 16 9 C 0.03 0.38 6.39 -2.61 -0.02 0.36 16 10 C -0.15 -2.03 4.70 -24.94 -0.12 -2.15 16 11 C 0.14 1.80 3.14 -67.30 -0.21 1.59 16 12 H 0.10 1.13 8.01 -51.93 -0.42 0.71 16 13 C 0.07 0.60 3.56 -65.31 -0.23 0.36 16 14 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 15 C -0.15 -1.28 3.94 -25.78 -0.10 -1.38 16 16 C -0.13 -1.41 6.09 -28.11 -0.17 -1.58 16 17 C 0.51 8.55 7.47 -11.79 -0.09 8.46 16 18 O -0.54 -11.92 16.20 5.56 0.09 -11.83 16 19 N -0.59 -9.60 2.51 -166.15 -0.42 -10.02 16 20 C 0.11 2.20 5.06 -4.04 -0.02 2.18 16 21 C 0.01 0.36 5.07 -27.88 -0.14 0.22 16 22 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 23 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 26 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.10 0.26 7.78 -51.93 -0.40 -0.14 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.55 6.80 -51.93 -0.35 0.19 16 34 H 0.11 0.40 6.98 -51.93 -0.36 0.04 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.74 6.88 -51.93 -0.36 0.39 16 37 H 0.09 1.42 7.37 -51.93 -0.38 1.04 16 38 H 0.08 1.23 7.35 -51.93 -0.38 0.85 16 39 H 0.08 0.42 6.49 -51.93 -0.34 0.08 16 40 H 0.08 0.79 6.58 -51.93 -0.34 0.44 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.69 7.13 -51.93 -0.37 1.32 16 44 H 0.06 1.16 7.90 -51.93 -0.41 0.75 16 45 H 0.02 0.54 6.11 -51.93 -0.32 0.22 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -35.09 372.50 -8.32 -43.41 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.94 Total: -3.23 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -2.27 Total: -4.11 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.03 Total: -47.03 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.25 Total: -11.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.09 -8.32 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273989370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.051 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds