Wall clock time and date at job start Tue Mar 31 2020 19:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31816 * 119.12147 * 2 1 4 4 C 1.32317 * 120.81718 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10160 * 0.02562 * 4 3 2 6 6 C 1.38574 * 118.40180 * 359.97438 * 5 4 3 7 7 C 1.50708 * 120.44905 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47022 * 125.00457 * 7 6 5 9 9 C 1.50696 * 109.46726 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00623 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99514 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99836 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47047 * 180.02562 * 12 11 9 14 14 O 1.42897 * 110.88565 * 303.88129 * 13 12 11 15 15 C 1.55152 * 111.00471 * 180.02562 * 13 12 11 16 16 C 1.54318 * 102.94511 * 206.42492 * 15 13 12 17 17 N 1.47022 * 107.27253 * 22.18990 * 16 15 13 18 18 C 1.36933 * 125.65341 * 181.02674 * 17 16 15 19 19 H 1.08006 * 120.00444 * 153.90406 * 18 17 16 20 20 C 1.38817 * 119.99751 * 333.90252 * 18 17 16 21 21 N 1.31616 * 120.00100 * 145.63931 * 20 18 17 22 22 Si 1.86797 * 119.99742 * 325.63468 * 20 18 17 23 23 H 1.48495 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46991 * 120.00404 * 22 20 18 25 25 H 1.48502 * 109.47132 * 239.99993 * 22 20 18 26 26 C 1.47424 * 108.69946 * 1.29134 * 17 16 15 27 27 N 1.31785 * 119.12655 * 180.29243 * 2 1 3 28 28 H 1.08997 * 109.47213 * 90.00362 * 1 2 3 29 29 H 1.09004 * 109.46842 * 210.00300 * 1 2 3 30 30 H 1.08996 * 109.47244 * 330.00443 * 1 2 3 31 31 H 1.07993 * 120.44932 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.79787 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46625 * 5.00723 * 7 6 5 34 34 H 1.08997 * 109.47323 * 245.00826 * 7 6 5 35 35 H 1.08996 * 109.46723 * 59.99930 * 8 7 6 36 36 H 1.09006 * 109.46902 * 300.00024 * 8 7 6 37 37 H 0.97004 * 120.00175 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47026 * 59.99836 * 12 11 9 39 39 H 1.08997 * 109.47190 * 300.00375 * 12 11 9 40 40 H 0.96701 * 114.00137 * 56.12335 * 14 13 12 41 41 H 1.09001 * 110.72609 * 88.05778 * 15 13 12 42 42 H 1.09005 * 110.72274 * 324.78637 * 15 13 12 43 43 H 1.09006 * 109.88476 * 262.77823 * 16 15 13 44 44 H 1.08998 * 109.88900 * 141.61115 * 16 15 13 45 45 H 0.97006 * 120.00091 * 5.05677 * 21 20 18 46 46 H 1.09000 * 110.36988 * 94.48149 * 26 17 16 47 47 H 1.09005 * 110.36594 * 216.80532 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4713 -1.1903 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7164 -3.3570 1.1795 9 6 4.4418 -4.6779 1.1792 10 8 5.2613 -4.9197 0.3185 11 7 4.1797 -5.5907 2.1356 12 6 4.8844 -6.8751 2.1351 13 6 4.4048 -7.7204 3.3167 14 8 4.5791 -7.0186 4.5492 15 6 5.1304 -9.0914 3.3506 16 6 4.1173 -10.0009 4.0772 17 7 2.7914 -9.3832 3.9288 18 6 1.6217 -9.8696 4.4486 19 1 0.8053 -9.1961 4.6645 20 6 1.4850 -11.2283 4.6981 21 7 0.7741 -11.6404 5.7263 22 14 2.3099 -12.4718 3.5745 23 1 3.0451 -11.7570 2.5003 24 1 3.2622 -13.2952 4.3620 25 1 1.2787 -13.3517 2.9682 26 6 2.9289 -8.1569 3.1223 27 7 2.1484 -1.1512 -0.0059 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.9906 2.1375 -0.0009 32 1 5.2609 -0.0001 -0.0016 33 1 5.2685 -2.3377 0.0872 34 1 3.9899 -3.0388 -0.9335 35 1 2.6441 -3.5308 1.0902 36 1 3.9228 -2.8297 2.1109 37 1 3.5245 -5.3973 2.8243 38 1 5.9568 -6.7012 2.2238 39 1 4.6777 -7.4026 1.2039 40 1 4.1434 -6.1557 4.5755 41 1 6.0603 -9.0219 3.9150 42 1 5.3179 -9.4536 2.3397 43 1 4.3760 -10.0740 5.1336 44 1 4.1173 -10.9922 3.6240 45 1 0.2858 -10.9995 6.2664 46 1 2.7288 -8.3691 2.0720 47 1 2.2537 -7.3838 3.4893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278794524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:04 Heat of formation + Delta-G solvation = -16.483328 kcal Electronic energy + Delta-G solvation = -28055.211644 eV Core-core repulsion = 24045.761801 eV Total energy + Delta-G solvation = -4009.449843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50925 -40.08741 -38.68475 -35.60385 -35.29254 -34.22308 -33.80919 -32.42337 -31.95325 -30.02465 -28.98104 -28.57778 -26.66062 -25.31503 -23.65408 -23.03585 -22.06990 -20.88978 -20.24544 -20.10587 -18.06797 -17.75621 -17.50697 -16.84179 -16.27760 -15.95999 -15.84557 -15.57022 -15.46791 -15.04147 -14.73658 -14.28354 -14.09563 -13.69550 -13.55123 -13.36721 -13.23681 -13.06125 -12.95814 -12.85964 -12.72401 -12.46351 -12.24742 -11.82544 -11.66285 -11.33572 -11.24846 -11.17070 -10.91155 -10.85511 -10.62650 -10.51555 -10.01798 -9.79513 -9.78147 -9.61479 -9.57506 -9.29146 -9.21915 -8.26119 -7.07769 -6.32746 -3.26998 0.48282 0.65020 2.47212 2.93542 3.31922 3.45579 3.48337 3.52130 3.66514 3.67969 4.02177 4.28872 4.39114 4.58019 4.60040 4.62121 4.66865 4.74862 4.80427 4.94508 4.96004 5.07780 5.11189 5.16593 5.21470 5.22665 5.40065 5.43284 5.51219 5.60273 5.65896 5.67099 5.72470 5.87041 6.02704 6.07031 6.14851 6.22529 6.36977 6.40819 6.62449 6.70893 6.86856 7.26673 7.71209 7.77202 7.88533 8.03061 8.35905 8.99436 9.59047 10.32291 11.04355 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002124 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.963592 B =13180.268016 C =14071.631359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.321 3.679 3 N -0.526 5.526 4 C 0.153 3.847 5 C -0.233 4.233 6 C 0.184 3.816 7 C -0.055 4.055 8 C -0.133 4.133 9 C 0.516 3.484 10 O -0.543 6.543 11 N -0.727 5.727 12 C 0.104 3.896 13 C 0.102 3.898 14 O -0.536 6.536 15 C -0.114 4.114 16 C 0.127 3.873 17 N -0.595 5.595 18 C -0.343 4.343 19 H 0.065 0.935 20 C -0.005 4.005 21 N -0.901 5.901 22 Si 1.049 2.951 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.297 1.297 26 C 0.110 3.890 27 N -0.516 5.516 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.364 0.636 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.031 0.969 45 H 0.266 0.734 46 H 0.029 0.971 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 24.735 -11.365 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.241 5.241 4 C -0.013 4.013 5 C -0.255 4.255 6 C 0.037 3.963 7 C -0.093 4.093 8 C -0.173 4.173 9 C 0.303 3.697 10 O -0.420 6.420 11 N -0.379 5.379 12 C -0.021 4.021 13 C 0.060 3.940 14 O -0.341 6.341 15 C -0.153 4.153 16 C 0.002 3.998 17 N -0.322 5.322 18 C -0.470 4.470 19 H 0.083 0.917 20 C -0.209 4.209 21 N -0.539 5.539 22 Si 0.880 3.120 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.225 1.225 26 C -0.016 4.016 27 N -0.231 5.231 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.166 0.834 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.211 0.789 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.326 22.353 -11.991 26.403 hybrid contribution 0.012 2.242 0.347 2.269 sum 7.338 24.595 -11.643 28.184 Atomic orbital electron populations 1.20595 0.85571 1.04366 1.04007 1.23320 0.98275 0.83272 0.89772 1.68280 1.10218 1.30551 1.15094 1.23248 0.89691 0.98677 0.89670 1.22795 1.03070 0.94131 1.05495 1.21750 0.89622 0.95861 0.89045 1.20353 0.99284 0.89730 0.99981 1.21555 1.02575 0.93158 1.00046 1.20554 0.82577 0.85619 0.80984 1.90709 1.34716 1.79474 1.37095 1.45972 1.44007 1.17148 1.30794 1.22005 0.97106 0.83420 0.99521 1.22717 0.97192 0.91598 0.82480 1.86629 1.77133 1.34457 1.35849 1.22570 0.98885 0.92321 1.01479 1.21588 0.85042 0.95004 0.98121 1.44531 1.02837 1.25613 1.59268 1.19735 0.93215 0.92558 1.41514 0.91724 1.26069 1.00351 0.96287 0.98180 1.70919 1.32319 1.38469 1.12174 0.84028 0.75527 0.75352 0.77064 1.20590 1.21856 1.22527 1.22285 0.92387 0.91896 0.95069 1.68100 1.09527 1.30588 1.14881 0.89545 0.89370 0.89578 0.81421 0.83369 0.88849 0.88330 0.87468 0.88894 0.76605 0.90680 0.90240 0.78918 0.90254 0.90126 0.94241 0.95145 0.92365 0.95341 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.32 36.01 0.37 -0.20 16 2 C 0.32 3.02 7.64 -157.18 -1.20 1.82 16 3 N -0.53 -4.90 10.33 -10.72 -0.11 -5.02 16 4 C 0.15 1.07 11.31 -17.20 -0.19 0.88 16 5 C -0.23 -1.57 9.80 -39.32 -0.39 -1.96 16 6 C 0.18 1.57 6.20 -82.25 -0.51 1.06 16 7 C -0.06 -0.45 4.94 -27.88 -0.14 -0.58 16 8 C -0.13 -1.08 5.57 -27.89 -0.16 -1.23 16 9 C 0.52 5.75 7.83 -10.99 -0.09 5.66 16 10 O -0.54 -7.92 15.98 5.56 0.09 -7.83 16 11 N -0.73 -7.80 5.20 -60.29 -0.31 -8.12 16 12 C 0.10 1.34 4.88 -4.04 -0.02 1.32 16 13 C 0.10 1.60 0.97 -88.35 -0.09 1.51 16 14 O -0.54 -8.40 13.21 -35.23 -0.47 -8.87 16 15 C -0.11 -1.92 6.15 -24.90 -0.15 -2.07 16 16 C 0.13 2.80 6.04 -3.07 -0.02 2.78 16 17 N -0.60 -14.54 3.05 -169.93 -0.52 -15.06 16 18 C -0.34 -9.78 10.24 -15.06 -0.15 -9.94 16 19 H 0.07 1.95 8.06 -52.48 -0.42 1.53 16 20 C 0.00 -0.14 5.29 -17.43 -0.09 -0.24 16 21 N -0.90 -27.88 13.70 55.49 0.76 -27.12 16 22 Si 1.05 26.24 26.22 -169.99 -4.46 21.79 16 23 H -0.28 -6.56 6.18 56.52 0.35 -6.21 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 26 C 0.11 2.12 6.23 -2.41 -0.02 2.10 16 27 N -0.52 -5.11 9.94 -6.99 -0.07 -5.18 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.61 8.01 -52.48 -0.42 0.19 16 33 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 34 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.11 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.40 3.52 7.28 -40.82 -0.30 3.22 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 40 H 0.36 4.21 7.69 45.56 0.35 4.56 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.70 3.85 -51.93 -0.20 0.50 16 45 H 0.27 8.14 8.73 -40.82 -0.36 7.79 16 46 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 47 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -36.60 386.34 -8.60 -45.20 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.50 Total: 3.47 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -2.84 Total: 0.91 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.25 Total: -60.49 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.38 Total: -16.69 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.46 Total: 21.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.60 -8.60 -45.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278794524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.714 kcal (2) G-P(sol) polarization free energy of solvation -36.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds