Wall clock time and date at job start Tue Mar 31 2020 19:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31816 * 119.12147 * 2 1 4 4 C 1.32317 * 120.81718 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10160 * 0.02562 * 4 3 2 6 6 C 1.38574 * 118.40180 * 359.97438 * 5 4 3 7 7 C 1.50708 * 120.44905 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47022 * 125.00457 * 7 6 5 9 9 C 1.50696 * 109.46726 * 180.02562 * 8 7 6 10 10 O 1.21276 * 120.00623 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99514 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99836 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47047 * 180.02562 * 12 11 9 14 14 O 1.42897 * 110.88565 * 303.88129 * 13 12 11 15 15 C 1.55152 * 111.00471 * 180.02562 * 13 12 11 16 16 C 1.54318 * 102.94511 * 206.42492 * 15 13 12 17 17 N 1.47022 * 107.27253 * 22.18990 * 16 15 13 18 18 C 1.36933 * 125.65341 * 181.02674 * 17 16 15 19 19 H 1.08006 * 120.00444 * 153.90406 * 18 17 16 20 20 C 1.38817 * 119.99751 * 333.90252 * 18 17 16 21 21 N 1.31616 * 120.00100 * 145.63931 * 20 18 17 22 22 Si 1.86797 * 119.99742 * 325.63468 * 20 18 17 23 23 H 1.48495 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46991 * 120.00404 * 22 20 18 25 25 H 1.48502 * 109.47132 * 239.99993 * 22 20 18 26 26 C 1.47424 * 108.69946 * 1.29134 * 17 16 15 27 27 N 1.31785 * 119.12655 * 180.29243 * 2 1 3 28 28 H 1.08997 * 109.47213 * 90.00362 * 1 2 3 29 29 H 1.09004 * 109.46842 * 210.00300 * 1 2 3 30 30 H 1.08996 * 109.47244 * 330.00443 * 1 2 3 31 31 H 1.07993 * 120.44932 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.79787 * 180.02562 * 5 4 3 33 33 H 1.09004 * 109.46625 * 5.00723 * 7 6 5 34 34 H 1.08997 * 109.47323 * 245.00826 * 7 6 5 35 35 H 1.08996 * 109.46723 * 59.99930 * 8 7 6 36 36 H 1.09006 * 109.46902 * 300.00024 * 8 7 6 37 37 H 0.97004 * 120.00175 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.47026 * 59.99836 * 12 11 9 39 39 H 1.08997 * 109.47190 * 300.00375 * 12 11 9 40 40 H 0.96701 * 114.00137 * 56.12335 * 14 13 12 41 41 H 1.09001 * 110.72609 * 88.05778 * 15 13 12 42 42 H 1.09005 * 110.72274 * 324.78637 * 15 13 12 43 43 H 1.09006 * 109.88476 * 262.77823 * 16 15 13 44 44 H 1.08998 * 109.88900 * 141.61115 * 16 15 13 45 45 H 0.97006 * 120.00091 * 5.05677 * 21 20 18 46 46 H 1.09000 * 110.36988 * 94.48149 * 26 17 16 47 47 H 1.09005 * 110.36594 * 216.80532 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1808 -0.0001 -0.0016 6 6 3.4713 -1.1903 -0.0015 7 6 4.1961 -2.5116 -0.0021 8 6 3.7164 -3.3570 1.1795 9 6 4.4418 -4.6779 1.1792 10 8 5.2613 -4.9197 0.3185 11 7 4.1797 -5.5907 2.1356 12 6 4.8844 -6.8751 2.1351 13 6 4.4048 -7.7204 3.3167 14 8 4.5791 -7.0186 4.5492 15 6 5.1304 -9.0914 3.3506 16 6 4.1173 -10.0009 4.0772 17 7 2.7914 -9.3832 3.9288 18 6 1.6217 -9.8696 4.4486 19 1 0.8053 -9.1961 4.6645 20 6 1.4850 -11.2283 4.6981 21 7 0.7741 -11.6404 5.7263 22 14 2.3099 -12.4718 3.5745 23 1 3.0451 -11.7570 2.5003 24 1 3.2622 -13.2952 4.3620 25 1 1.2787 -13.3517 2.9682 26 6 2.9289 -8.1569 3.1223 27 7 2.1484 -1.1512 -0.0059 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 3.9906 2.1375 -0.0009 32 1 5.2609 -0.0001 -0.0016 33 1 5.2685 -2.3377 0.0872 34 1 3.9899 -3.0388 -0.9335 35 1 2.6441 -3.5308 1.0902 36 1 3.9228 -2.8297 2.1109 37 1 3.5245 -5.3973 2.8243 38 1 5.9568 -6.7012 2.2238 39 1 4.6777 -7.4026 1.2039 40 1 4.1434 -6.1557 4.5755 41 1 6.0603 -9.0219 3.9150 42 1 5.3179 -9.4536 2.3397 43 1 4.3760 -10.0740 5.1336 44 1 4.1173 -10.9922 3.6240 45 1 0.2858 -10.9995 6.2664 46 1 2.7288 -8.3691 2.0720 47 1 2.2537 -7.3838 3.4893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278794524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:03 Heat of formation + Delta-G solvation = -45.164325 kcal Electronic energy + Delta-G solvation = -28056.455345 eV Core-core repulsion = 24045.761801 eV Total energy + Delta-G solvation = -4010.693544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.09024 -41.11529 -39.96384 -36.95259 -36.13586 -35.26769 -34.39969 -34.36134 -32.68711 -31.61957 -30.06382 -29.43870 -27.83002 -26.49547 -24.80930 -23.99423 -22.79677 -22.44807 -21.48299 -21.30773 -19.57793 -18.80714 -18.53390 -17.83106 -17.15628 -16.95789 -16.72634 -16.56233 -16.30592 -16.12747 -16.05173 -15.49040 -15.34071 -15.01166 -14.90080 -14.47369 -14.41141 -14.10427 -13.83962 -13.59546 -13.52302 -13.36732 -13.23137 -13.04837 -13.00999 -12.86933 -12.51579 -12.35977 -12.29514 -11.86394 -11.80672 -11.67348 -11.55218 -11.30562 -11.06689 -10.90507 -10.42901 -10.33837 -10.22645 -10.16562 -9.17123 -8.56116 -5.49301 -0.08618 0.08559 1.43175 1.52295 1.60523 1.70805 2.07138 2.51533 2.73010 2.92510 2.93051 3.10700 3.15582 3.33716 3.45677 3.58442 3.73948 3.77305 3.85348 4.05798 4.10730 4.14279 4.23514 4.36169 4.42134 4.48524 4.56353 4.62193 4.64265 4.69642 4.76212 4.79540 4.84084 4.85436 4.93198 4.96248 5.06513 5.08049 5.10277 5.22195 5.32726 5.49469 5.70792 6.06570 6.15144 6.42074 6.72172 6.81903 7.12167 7.16913 7.49783 8.20084 8.75891 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.002124 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.963592 B =13180.268016 C =14071.631359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.301 3.699 3 N -0.547 5.547 4 C 0.147 3.853 5 C -0.227 4.227 6 C 0.168 3.832 7 C -0.049 4.049 8 C -0.123 4.123 9 C 0.519 3.481 10 O -0.577 6.577 11 N -0.722 5.722 12 C 0.117 3.883 13 C 0.121 3.879 14 O -0.551 6.551 15 C -0.109 4.109 16 C 0.117 3.883 17 N -0.617 5.617 18 C -0.336 4.336 19 H 0.032 0.968 20 C -0.061 4.061 21 N -0.936 5.936 22 Si 1.093 2.907 23 H -0.254 1.254 24 H -0.285 1.285 25 H -0.295 1.295 26 C 0.104 3.896 27 N -0.537 5.537 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.200 0.800 32 H 0.177 0.823 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.409 0.591 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.382 0.618 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.016 0.984 44 H 0.028 0.972 45 H 0.251 0.749 46 H 0.035 0.965 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 26.357 -12.799 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.034 3.966 3 N -0.262 5.262 4 C -0.018 4.018 5 C -0.248 4.248 6 C 0.022 3.978 7 C -0.088 4.088 8 C -0.163 4.163 9 C 0.307 3.693 10 O -0.456 6.456 11 N -0.375 5.375 12 C -0.008 4.008 13 C 0.079 3.921 14 O -0.358 6.358 15 C -0.147 4.147 16 C -0.007 4.007 17 N -0.344 5.344 18 C -0.464 4.464 19 H 0.049 0.951 20 C -0.258 4.258 21 N -0.577 5.577 22 Si 0.918 3.082 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.223 1.223 26 C -0.021 4.021 27 N -0.253 5.253 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.217 0.783 32 H 0.195 0.805 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.053 0.947 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.604 24.029 -13.426 29.153 hybrid contribution -0.720 1.889 0.841 2.190 sum 8.884 25.919 -12.585 30.151 Atomic orbital electron populations 1.20643 0.84422 1.04728 1.04538 1.23730 0.99301 0.83362 0.90189 1.68325 1.11514 1.30588 1.15786 1.23855 0.89168 1.00228 0.88580 1.23099 1.04459 0.93261 1.03974 1.21916 0.89518 0.96635 0.89687 1.20293 0.99825 0.89469 0.99188 1.21510 1.01995 0.91653 1.01151 1.20981 0.81985 0.86221 0.80120 1.90699 1.36360 1.80208 1.38368 1.45910 1.43984 1.16434 1.31130 1.21745 0.97549 0.83756 0.97718 1.22445 0.94174 0.91880 0.83591 1.86600 1.77344 1.35781 1.36050 1.22606 0.98040 0.91516 1.02502 1.21720 0.85258 0.96181 0.97562 1.44617 1.02457 1.27107 1.60205 1.19618 0.93987 0.92229 1.40611 0.95055 1.27256 1.01249 0.98663 0.98637 1.71040 1.34571 1.38185 1.13859 0.83463 0.75157 0.73566 0.75966 1.17857 1.21144 1.22299 1.22495 0.95388 0.89754 0.94448 1.68091 1.10415 1.31039 1.15752 0.88883 0.89279 0.88886 0.78281 0.80542 0.87809 0.89824 0.87469 0.86814 0.75411 0.89853 0.90525 0.76860 0.88270 0.87599 0.96611 0.95463 0.93913 0.94695 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.32 71.24 0.74 -0.35 16 2 C 0.30 5.46 7.64 138.75 1.06 6.52 16 3 N -0.55 -9.52 10.33 -187.83 -1.94 -11.47 16 4 C 0.15 1.74 11.31 84.71 0.96 2.70 16 5 C -0.23 -2.51 9.80 22.44 0.22 -2.29 16 6 C 0.17 2.60 6.20 42.56 0.26 2.87 16 7 C -0.05 -0.71 4.94 29.85 0.15 -0.57 16 8 C -0.12 -1.73 5.57 29.85 0.17 -1.56 16 9 C 0.52 10.34 7.83 87.65 0.69 11.03 16 10 O -0.58 -15.66 15.98 -3.02 -0.05 -15.71 16 11 N -0.72 -13.52 5.20 -463.06 -2.41 -15.92 16 12 C 0.12 2.66 4.88 86.38 0.42 3.08 16 13 C 0.12 3.45 0.97 -9.33 -0.01 3.44 16 14 O -0.55 -15.83 13.21 -148.98 -1.97 -17.80 16 15 C -0.11 -3.31 6.15 31.78 0.20 -3.11 16 16 C 0.12 5.00 6.04 86.73 0.52 5.53 16 17 N -0.62 -29.79 3.05 -691.54 -2.11 -31.90 16 18 C -0.34 -19.56 10.24 84.04 0.86 -18.70 16 19 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 20 C -0.06 -3.61 5.29 84.86 0.45 -3.16 16 21 N -0.94 -59.82 13.70 21.65 0.30 -59.52 16 22 Si 1.09 53.01 26.22 68.60 1.80 54.81 16 23 H -0.25 -11.10 6.18 99.48 0.61 -10.49 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 C 0.10 3.85 6.23 86.93 0.54 4.39 16 27 N -0.54 -10.19 9.94 -176.02 -1.75 -11.94 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.18 0.83 8.01 -2.91 -0.02 0.81 16 33 H 0.10 1.26 7.90 -2.38 -0.02 1.24 16 34 H 0.08 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.11 1.56 7.99 -2.39 -0.02 1.54 16 36 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.41 6.09 7.28 -92.71 -0.68 5.42 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 40 H 0.38 7.80 7.69 -74.06 -0.57 7.23 16 41 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.11 2.72 8.04 -2.38 -0.02 2.70 16 43 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.03 1.19 3.85 -2.39 -0.01 1.18 16 45 H 0.25 16.16 8.73 -92.70 -0.81 15.35 16 46 H 0.04 1.28 7.99 -2.39 -0.02 1.26 16 47 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -81.23 386.34 -1.29 -82.52 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.38 Total: 17.11 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.22 Total: 9.81 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -7.92 Total: -130.75 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.02 Total: -33.50 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 1.80 Total: 54.81 kcal Total: -81.23 -1.29 -82.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278794524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.352 kcal (2) G-P(sol) polarization free energy of solvation -81.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds