Wall clock time and date at job start Tue Mar 31 2020 19:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.53331 * 2 1 4 4 C 1.53119 * 109.52258 * 300.70368 * 3 2 1 5 5 C 1.53033 * 109.27589 * 182.44044 * 4 3 2 6 6 N 1.46848 * 109.52731 * 59.18158 * 5 4 3 7 7 C 1.46895 * 111.00101 * 174.15772 * 6 5 4 8 8 C 1.53003 * 109.47153 * 176.20220 * 7 6 5 9 9 H 1.09010 * 109.46670 * 301.80681 * 8 7 6 10 10 C 1.47204 * 109.47117 * 61.80113 * 8 7 6 11 11 N 6.85285 * 137.56976 * 313.97665 * 2 1 3 12 12 C 1.52999 * 109.47233 * 181.80507 * 8 7 6 13 13 C 1.50705 * 109.46936 * 174.99728 * 12 8 7 14 14 H 1.07995 * 119.99882 * 0.02562 * 13 12 8 15 15 C 1.37872 * 120.00051 * 179.97438 * 13 12 8 16 16 N 1.31517 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00199 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47211 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47255 * 299.99983 * 17 15 13 20 20 H 1.48503 * 109.47328 * 59.99914 * 17 15 13 21 21 C 1.46848 * 111.19074 * 298.25751 * 6 5 4 22 22 C 1.53032 * 109.52826 * 61.74325 * 21 6 5 23 23 N 1.47313 * 110.59774 * 237.17351 * 2 1 3 24 24 C 1.34868 * 106.43671 * 241.26594 * 23 2 1 25 25 O 1.21536 * 123.73000 * 180.02562 * 24 23 2 26 26 N 1.33794 * 112.49986 * 0.13841 * 24 23 2 27 27 C 1.34768 * 111.64304 * 359.90911 * 26 24 23 28 28 O 1.21235 * 127.14930 * 180.02562 * 27 26 24 29 29 H 1.08996 * 109.47596 * 59.99959 * 1 2 3 30 30 H 1.09007 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47136 * 299.99577 * 1 2 3 32 32 H 1.09005 * 109.57362 * 60.86252 * 3 2 1 33 33 H 1.09005 * 109.50555 * 62.49575 * 4 3 2 34 34 H 1.09001 * 109.50374 * 302.37974 * 4 3 2 35 35 H 1.09001 * 109.46611 * 299.15884 * 5 4 3 36 36 H 1.09008 * 109.46231 * 179.19552 * 5 4 3 37 37 H 1.09001 * 109.47283 * 56.20075 * 7 6 5 38 38 H 1.08999 * 109.47209 * 296.20192 * 7 6 5 39 39 H 1.09001 * 109.46949 * 54.99962 * 12 8 7 40 40 H 1.08994 * 109.47086 * 295.00082 * 12 8 7 41 41 H 0.96996 * 120.00130 * 0.02562 * 16 15 13 42 42 H 1.09003 * 109.45700 * 181.75937 * 21 6 5 43 43 H 1.08999 * 109.46316 * 301.71641 * 21 6 5 44 44 H 1.08994 * 109.50564 * 180.87896 * 22 21 6 45 45 H 1.08995 * 109.50481 * 60.75637 * 22 21 6 46 46 H 0.96994 * 126.68993 * 61.26767 * 23 2 1 47 47 H 0.97003 * 124.17310 * 179.87330 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 6 1.5561 2.1705 -1.2409 5 6 2.1449 3.5828 -1.2670 6 7 3.6110 3.5029 -1.2917 7 6 4.2080 4.8349 -1.4567 8 6 5.7322 4.7233 -1.3830 9 1 6.0185 4.2837 -0.4275 10 6 6.2153 3.8693 -2.4804 11 7 6.5881 3.2104 -3.3272 12 6 6.3523 6.1163 -1.5098 13 6 7.8436 6.0219 -1.3146 14 1 8.3032 5.0641 -1.1200 15 6 8.6214 7.1580 -1.3854 16 7 8.0618 8.3242 -1.6229 17 14 10.4700 7.0409 -1.1441 18 1 11.0719 8.3930 -1.2670 19 1 10.7594 6.4916 0.2049 20 1 11.0484 6.1452 -2.1778 21 6 4.1269 2.8404 -0.0871 22 6 3.5974 1.4059 -0.0257 23 7 2.0482 -0.7475 -1.1588 24 6 2.7646 -1.7757 -0.6602 25 8 3.3358 -2.5974 -1.3499 26 7 2.7744 -1.7918 0.6776 27 6 2.0633 -0.7692 1.1922 28 8 1.8873 -0.5169 2.3649 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.7264 1.9502 0.8971 33 1 0.4682 2.2302 -1.2068 34 1 1.8636 1.6314 -2.1369 35 1 1.8257 4.1259 -0.3775 36 1 1.7946 4.1059 -2.1569 37 1 3.8531 5.4930 -0.6635 38 1 3.9201 5.2447 -2.4248 39 1 5.9274 6.7735 -0.7511 40 1 6.1402 6.5196 -2.4999 41 1 7.1019 8.3851 -1.7478 42 1 5.2163 2.8243 -0.1199 43 1 3.7985 3.3870 0.7969 44 1 3.9679 0.9195 0.8766 45 1 3.9370 0.8548 -0.9026 46 1 1.9021 -0.5398 -2.0949 47 1 3.2359 -2.4576 1.2111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319023136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:21 Heat of formation + Delta-G solvation = -56.849182 kcal Electronic energy + Delta-G solvation = -29555.533532 eV Core-core repulsion = 25544.333294 eV Total energy + Delta-G solvation = -4011.200238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.70039 -40.42879 -39.75644 -38.43971 -37.38376 -36.13077 -35.69394 -34.22284 -32.70861 -32.03995 -30.92101 -28.14501 -26.66476 -25.30325 -24.42299 -23.88607 -23.83437 -22.89450 -21.59947 -20.77071 -19.23221 -19.09025 -18.23933 -17.85819 -17.65572 -17.00090 -16.87910 -16.56225 -16.16689 -15.76402 -15.65200 -15.53711 -15.33048 -15.25991 -14.94294 -14.82861 -14.23615 -14.02090 -13.90964 -13.82296 -13.52586 -13.37053 -13.27230 -13.02193 -12.90474 -12.65007 -12.43318 -12.24321 -12.10866 -12.08751 -11.99709 -11.96334 -11.66785 -11.57615 -11.52934 -11.35470 -11.03767 -10.67935 -10.53922 -10.43973 -9.22073 -8.64934 -6.36107 0.49289 1.39683 1.52581 1.58471 1.77676 1.91642 1.96624 2.03829 2.11742 2.54626 2.85901 2.88975 3.16704 3.25151 3.30771 3.56139 3.79638 3.94615 4.05498 4.19020 4.24897 4.25620 4.30921 4.44186 4.52446 4.60228 4.62964 4.69190 4.75330 4.80383 4.82882 4.87834 4.96210 4.98739 4.99839 5.08854 5.11397 5.18608 5.27072 5.36899 5.40122 5.76852 5.84947 5.91694 6.08354 6.18646 6.22629 6.34459 6.61795 6.81148 7.07817 7.41160 8.77440 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002668 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.369013 B =10492.000119 C =10924.360608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 C -0.075 4.075 4 C -0.103 4.103 5 C 0.053 3.947 6 N -0.552 5.552 7 C 0.074 3.926 8 C 0.021 3.979 9 H 0.113 0.887 10 C 0.263 3.737 11 N -0.508 5.508 12 C 0.023 3.977 13 C -0.617 4.617 14 H 0.043 0.957 15 C -0.028 4.028 16 N -0.934 5.934 17 Si 1.103 2.897 18 H -0.281 1.281 19 H -0.265 1.265 20 H -0.284 1.284 21 C 0.050 3.950 22 C -0.112 4.112 23 N -0.700 5.700 24 C 0.705 3.295 25 O -0.587 6.587 26 N -0.676 5.676 27 C 0.535 3.465 28 O -0.487 6.487 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.032 0.968 40 H -0.001 1.001 41 H 0.262 0.738 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.448 0.552 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.601 -14.990 6.877 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.042 3.958 3 C -0.095 4.095 4 C -0.140 4.140 5 C -0.074 4.074 6 N -0.277 5.277 7 C -0.055 4.055 8 C -0.001 4.001 9 H 0.130 0.870 10 C -0.053 4.053 11 N -0.185 5.185 12 C -0.016 4.016 13 C -0.655 4.655 14 H 0.061 0.939 15 C -0.227 4.227 16 N -0.572 5.572 17 Si 0.926 3.074 18 H -0.207 1.207 19 H -0.190 1.190 20 H -0.210 1.210 21 C -0.078 4.078 22 C -0.150 4.150 23 N -0.365 5.365 24 C 0.404 3.596 25 O -0.463 6.463 26 N -0.346 5.346 27 C 0.322 3.678 28 O -0.358 6.358 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.295 0.705 47 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -20.390 -15.610 5.485 26.258 hybrid contribution -0.845 -0.401 0.636 1.132 sum -21.235 -16.011 6.122 27.290 Atomic orbital electron populations 1.22099 0.87536 1.04420 1.06274 1.21606 0.98703 0.92940 0.82590 1.21456 0.94508 0.91496 1.02002 1.21684 1.01670 0.94304 0.96389 1.22184 0.85373 0.97793 1.02097 1.61965 1.07816 1.19162 1.38758 1.22059 0.90044 0.90407 1.02990 1.19177 0.95541 0.93381 0.92017 0.86971 1.29243 0.90683 0.91703 0.93675 1.80990 1.11674 1.13120 1.12716 1.19137 0.95072 0.91033 0.96353 1.22366 0.94038 0.95842 1.53239 0.93884 1.27008 1.10233 0.92193 0.93276 1.70909 1.13404 1.26234 1.46603 0.83089 0.70566 0.76055 0.77698 1.20673 1.18995 1.21009 1.22114 0.99728 0.94618 0.91338 1.21624 0.95668 0.96470 1.01279 1.45718 1.53457 1.27476 1.09882 1.16032 0.79421 0.82353 0.81788 1.91047 1.50148 1.43357 1.61797 1.44316 1.51019 1.30925 1.08358 1.21032 0.76522 0.80210 0.90036 1.90837 1.57764 1.69440 1.17712 0.87501 0.91275 0.88856 0.87677 0.87263 0.91209 0.93228 0.89707 0.91202 0.90072 0.94989 0.98296 0.92796 0.92049 0.93103 0.92459 0.92285 0.70462 0.71963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 8.60 71.98 0.62 -0.08 16 2 C 0.13 1.37 0.75 2.98 0.00 1.37 16 3 C -0.08 -0.86 1.78 -10.71 -0.02 -0.88 16 4 C -0.10 -0.95 4.86 30.65 0.15 -0.80 16 5 C 0.05 0.74 5.46 86.32 0.47 1.21 16 6 N -0.55 -12.02 4.38 -896.37 -3.92 -15.95 16 7 C 0.07 1.91 4.52 86.31 0.39 2.30 16 8 C 0.02 0.73 1.75 -12.60 -0.02 0.70 16 9 H 0.11 3.77 6.08 -2.38 -0.01 3.75 16 10 C 0.26 10.85 13.44 89.44 1.20 12.06 16 11 N -0.51 -23.04 18.54 20.01 0.37 -22.67 16 12 C 0.02 1.03 3.74 29.85 0.11 1.14 16 13 C -0.62 -32.97 8.60 25.60 0.22 -32.75 16 14 H 0.04 2.32 7.59 -2.91 -0.02 2.29 16 15 C -0.03 -1.56 5.46 84.65 0.46 -1.09 16 16 N -0.93 -54.87 13.65 21.45 0.29 -54.58 16 17 Si 1.10 49.84 29.90 68.60 2.05 51.89 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.05 1.07 5.03 86.32 0.43 1.50 16 22 C -0.11 -2.05 4.84 30.64 0.15 -1.91 16 23 N -0.70 -8.72 4.72 -439.34 -2.07 -10.79 16 24 C 0.70 13.30 8.89 179.33 1.59 14.89 16 25 O -0.59 -16.26 18.04 -3.83 -0.07 -16.33 16 26 N -0.68 -10.33 5.70 -440.87 -2.51 -12.84 16 27 C 0.54 8.17 6.26 87.94 0.55 8.72 16 28 O -0.49 -9.84 18.02 -2.89 -0.05 -9.90 16 29 H 0.11 0.07 6.59 -2.39 -0.02 0.06 16 30 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 0.34 6.65 -2.38 -0.02 0.32 16 34 H 0.07 0.75 7.21 -2.39 -0.02 0.73 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 1.13 8.12 -2.38 -0.02 1.12 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 40 H 0.00 -0.06 8.01 -2.39 -0.02 -0.08 16 41 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 42 H 0.06 1.60 5.70 -2.39 -0.01 1.59 16 43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 1.09 7.33 -2.39 -0.02 1.07 16 45 H 0.06 1.30 7.47 -2.39 -0.02 1.29 16 46 H 0.45 4.39 8.27 -92.71 -0.77 3.63 16 47 H 0.44 5.43 8.96 -92.71 -0.83 4.60 16 Total: -1.00 -75.48 378.45 -0.08 -75.56 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -0.47 Total: 9.22 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.31 Total: 6.40 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -7.85 Total: -116.83 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.12 Total: -26.23 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -75.48 -0.08 -75.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319023136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.710 kcal (2) G-P(sol) polarization free energy of solvation -75.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds