Wall clock time and date at job start Tue Mar 31 2020 19:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31878 * 119.93123 * 2 1 4 4 N 1.28281 * 122.62220 * 180.02562 * 3 2 1 5 5 C 1.32490 * 122.22070 * 0.02562 * 4 3 2 6 6 O 1.35438 * 120.25083 * 179.97438 * 5 4 3 7 7 C 1.40449 * 119.49172 * 359.97438 * 5 4 3 8 8 C 1.47828 * 121.17752 * 179.97438 * 7 5 4 9 9 O 1.21553 * 119.99527 * 90.00076 * 8 7 5 10 10 N 1.34771 * 120.00423 * 270.00151 * 8 7 5 11 11 C 1.46917 * 120.63234 * 179.97438 * 10 8 7 12 12 C 1.53196 * 108.77416 * 126.41460 * 11 10 8 13 13 C 1.53036 * 109.31210 * 54.63802 * 12 11 10 14 14 C 1.53004 * 109.45848 * 178.62970 * 13 12 11 15 15 N 1.46496 * 109.46573 * 58.65179 * 13 12 11 16 16 C 1.36934 * 120.00548 * 179.97438 * 15 13 12 17 17 H 1.08004 * 119.99288 * 0.02562 * 16 15 13 18 18 C 1.38805 * 120.00389 * 180.02562 * 16 15 13 19 19 N 1.31624 * 120.00257 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00277 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00228 * 20 18 16 23 23 H 1.48499 * 109.46981 * 150.00382 * 20 18 16 24 24 C 1.53045 * 109.52647 * 298.63808 * 13 12 11 25 25 C 1.46931 * 120.62670 * 0.02562 * 10 8 7 26 26 C 1.38482 * 119.92947 * 180.28099 * 2 1 3 27 27 C 1.50697 * 121.06307 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.46631 * 90.00163 * 1 2 3 29 29 H 1.09004 * 109.46952 * 210.00061 * 1 2 3 30 30 H 1.08994 * 109.47035 * 329.99764 * 1 2 3 31 31 H 0.96703 * 113.99835 * 270.01587 * 6 5 4 32 32 H 1.09000 * 109.58852 * 6.62423 * 11 10 8 33 33 H 1.08999 * 109.58811 * 246.19897 * 11 10 8 34 34 H 1.08996 * 109.49779 * 294.68374 * 12 11 10 35 35 H 1.09002 * 109.52154 * 174.60547 * 12 11 10 36 36 H 1.09000 * 109.47018 * 300.02115 * 14 13 12 37 37 H 1.09002 * 109.47455 * 60.02337 * 14 13 12 38 38 H 1.09005 * 109.47153 * 180.02562 * 14 13 12 39 39 H 0.96999 * 119.99694 * 359.97438 * 15 13 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.49709 * 181.31191 * 24 13 12 42 42 H 1.09004 * 109.49751 * 301.40935 * 24 13 12 43 43 H 1.09001 * 109.58847 * 353.37922 * 25 10 8 44 44 H 1.09000 * 109.58213 * 113.65577 * 25 10 8 45 45 H 1.09000 * 109.47059 * 270.22125 * 27 26 2 46 46 H 1.09000 * 109.46918 * 30.21990 * 27 26 2 47 47 H 1.08998 * 109.47415 * 150.22171 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1651 1.1429 0.0000 4 7 3.4465 1.2031 -0.0005 5 6 4.2047 0.1166 -0.0015 6 8 5.5546 0.2267 -0.0025 7 6 3.5979 -1.1500 -0.0016 8 6 4.4080 -2.3866 -0.0033 9 8 4.7422 -2.8956 1.0488 10 7 4.7759 -2.9497 -1.1712 11 6 5.5813 -4.1782 -1.1890 12 6 4.8691 -5.2222 -2.0549 13 6 4.5955 -4.6299 -3.4392 14 6 3.9148 -5.6814 -4.3180 15 7 5.8611 -4.2240 -4.0554 16 6 5.8658 -3.6642 -5.3050 17 1 4.9363 -3.5215 -5.8362 18 6 7.0650 -3.2801 -5.8890 19 7 7.0694 -2.7415 -7.0900 20 14 8.6725 -3.5263 -4.9699 21 1 8.9680 -2.3190 -4.1573 22 1 8.5565 -4.7075 -4.0774 23 1 9.7709 -3.7480 -5.9444 24 6 3.6809 -3.4105 -3.3023 25 6 4.3800 -2.3458 -2.4508 26 6 2.1980 -1.2001 -0.0059 27 6 1.4672 -2.5180 -0.0129 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 5.9459 0.2593 -0.8862 32 1 5.6901 -4.5586 -0.1733 33 1 6.5644 -3.9647 -1.6086 34 1 3.9258 -5.5016 -1.5858 35 1 5.5010 -6.1047 -2.1551 36 1 4.5662 -6.5498 -4.4161 37 1 2.9731 -5.9835 -3.8597 38 1 3.7202 -5.2599 -5.3042 39 1 6.6958 -4.3519 -3.5781 40 1 7.9075 -2.4727 -7.4979 41 1 3.4675 -3.0030 -4.2904 42 1 2.7487 -3.7070 -2.8214 43 1 3.6962 -1.5169 -2.2677 44 1 5.2651 -1.9808 -2.9718 45 1 1.2872 -2.8391 1.0130 46 1 0.5146 -2.4025 -0.5300 47 1 2.0713 -3.2657 -0.5269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484921728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:44 Heat of formation + Delta-G solvation = -0.319099 kcal Electronic energy + Delta-G solvation = -30832.846378 eV Core-core repulsion = 26824.097469 eV Total energy + Delta-G solvation = -4008.748909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.77520 -40.04813 -38.17641 -37.87817 -35.20835 -34.76575 -33.00362 -32.37127 -30.99545 -29.89387 -29.02344 -28.31144 -27.86516 -25.03576 -23.71211 -23.22356 -22.91915 -22.50097 -20.13529 -19.13314 -18.49083 -18.27262 -17.90553 -17.18685 -16.51491 -15.94715 -15.15970 -15.00907 -14.74187 -14.59146 -14.38421 -13.91505 -13.82011 -13.72600 -13.49956 -13.40557 -13.19896 -13.13719 -12.99317 -12.69421 -12.46041 -12.37148 -12.29999 -12.04602 -11.55666 -11.45542 -11.40102 -11.13184 -11.04899 -10.98352 -10.60960 -10.45021 -10.29391 -10.04892 -9.91547 -9.65983 -9.60760 -9.52809 -9.08531 -8.59773 -7.40282 -5.88398 -3.24991 0.25837 0.47113 2.30752 2.78433 2.97020 3.22005 3.26691 3.29416 3.37529 3.81422 4.02348 4.10655 4.39102 4.47484 4.58473 4.87457 4.91260 4.99295 5.04940 5.08749 5.14178 5.20158 5.25218 5.31338 5.37302 5.43801 5.46182 5.48576 5.53973 5.63518 5.74744 5.76294 5.85885 5.87528 5.98779 6.13341 6.17644 6.25768 6.36168 6.45071 6.53044 6.76648 6.88375 7.08641 7.30573 7.86128 7.94712 8.30542 8.39210 9.07846 9.80687 9.99952 11.29454 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004189 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.350397 B = 6683.226299 C = 7089.649829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 N -0.207 5.207 4 N -0.253 5.253 5 C 0.287 3.713 6 O -0.467 6.467 7 C -0.134 4.134 8 C 0.571 3.429 9 O -0.529 6.529 10 N -0.590 5.590 11 C 0.115 3.885 12 C -0.133 4.133 13 C 0.204 3.796 14 C -0.150 4.150 15 N -0.742 5.742 16 C -0.241 4.241 17 H 0.092 0.908 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.877 3.123 21 H -0.285 1.285 22 H -0.278 1.278 23 H -0.291 1.291 24 C -0.131 4.131 25 C 0.113 3.887 26 C -0.034 4.034 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.361 0.639 40 H 0.260 0.740 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 -0.404 12.780 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 N -0.053 5.053 4 N -0.104 5.104 5 C 0.101 3.899 6 O -0.273 6.273 7 C -0.149 4.149 8 C 0.356 3.644 9 O -0.405 6.405 10 N -0.322 5.322 11 C -0.007 4.007 12 C -0.171 4.171 13 C 0.113 3.887 14 C -0.209 4.209 15 N -0.386 5.386 16 C -0.371 4.371 17 H 0.110 0.890 18 C -0.187 4.187 19 N -0.578 5.578 20 Si 0.708 3.292 21 H -0.212 1.212 22 H -0.204 1.204 23 H -0.218 1.218 24 C -0.171 4.171 25 C -0.009 4.009 26 C -0.045 4.045 27 C -0.181 4.181 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.271 0.729 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.194 0.806 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.778 1.018 13.682 18.748 hybrid contribution 1.691 -1.533 -0.140 2.287 sum -11.086 -0.515 13.541 17.508 Atomic orbital electron populations 1.20724 0.86708 1.04359 1.04046 1.22766 0.99380 0.89233 0.97268 1.72835 1.00149 1.24319 1.07979 1.73049 0.99509 1.26319 1.11564 1.20826 0.86364 0.88133 0.94570 1.84731 1.12882 1.95150 1.34519 1.21317 0.94741 0.95557 1.03276 1.17687 0.79558 0.82927 0.84221 1.90804 1.55737 1.62993 1.31013 1.48135 1.51896 1.26573 1.05612 1.21650 0.94119 0.83618 1.01308 1.22156 1.01081 0.98002 0.95909 1.19485 0.87273 0.91794 0.90145 1.22184 0.98570 0.99203 1.00925 1.42893 1.02142 1.75103 1.18476 1.18941 0.94926 1.31908 0.91296 0.89012 1.24632 0.96987 1.00848 0.96262 1.69685 1.26028 1.47213 1.14914 0.86683 0.85360 0.77873 0.79319 1.21173 1.20375 1.21783 1.22278 0.97511 0.97175 1.00168 1.21806 1.00860 0.95513 0.82751 1.21073 0.91489 0.97946 0.93989 1.20989 1.00878 0.92119 1.04066 0.89373 0.89882 0.89588 0.72947 0.89261 0.90857 0.91297 0.90410 0.93051 0.94314 0.91922 0.80558 0.93009 0.89807 0.92941 0.92034 0.88922 0.89152 0.89282 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 9.42 36.01 0.34 -0.32 16 2 C 0.06 0.64 6.86 -82.48 -0.57 0.07 16 3 N -0.21 -2.85 11.40 33.56 0.38 -2.47 16 4 N -0.25 -3.85 11.52 30.73 0.35 -3.49 16 5 C 0.29 4.19 7.88 -16.44 -0.13 4.06 16 6 O -0.47 -6.49 13.09 -18.01 -0.24 -6.73 16 7 C -0.13 -1.84 3.69 -104.45 -0.39 -2.23 16 8 C 0.57 8.61 5.50 -12.34 -0.07 8.54 16 9 O -0.53 -9.55 16.52 5.32 0.09 -9.46 16 10 N -0.59 -8.34 2.97 -173.88 -0.52 -8.85 16 11 C 0.11 1.63 6.16 -3.71 -0.02 1.60 16 12 C -0.13 -1.78 4.96 -26.61 -0.13 -1.91 16 13 C 0.20 3.21 0.74 -131.78 -0.10 3.11 16 14 C -0.15 -2.32 8.44 37.16 0.31 -2.00 16 15 N -0.74 -14.76 3.94 -47.20 -0.19 -14.94 16 16 C -0.24 -5.88 9.16 -15.06 -0.14 -6.02 16 17 H 0.09 2.42 6.93 -52.48 -0.36 2.06 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -27.26 13.97 55.49 0.78 -26.48 16 20 Si 0.88 20.54 27.74 -169.99 -4.71 15.83 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.13 -1.89 4.71 -26.60 -0.13 -2.02 16 25 C 0.11 1.60 6.08 -3.70 -0.02 1.58 16 26 C -0.03 -0.38 5.82 -103.84 -0.60 -0.98 16 27 C -0.12 -1.03 8.92 36.00 0.32 -0.70 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.38 6.80 -51.93 -0.35 0.02 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 4.07 9.06 45.56 0.41 4.48 16 32 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 33 H 0.07 1.11 6.94 -51.93 -0.36 0.75 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.10 7.27 -51.93 -0.38 0.72 16 39 H 0.36 7.29 4.32 -40.82 -0.18 7.11 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.80 6.22 -51.93 -0.32 0.48 16 44 H 0.09 1.54 7.74 -51.93 -0.40 1.14 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.50 6.83 -51.93 -0.35 0.15 16 47 H 0.08 0.77 7.24 -51.93 -0.38 0.39 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.66 372.83 -5.82 -38.48 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.97 Total: 9.56 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -1.41 Total: 2.94 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.81 Total: -56.24 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.15 Total: -16.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.66 -5.82 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484921728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.159 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds