Wall clock time and date at job start Tue Mar 31 2020 19:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31873 * 119.93256 * 2 1 4 4 N 1.28278 * 122.62366 * 180.02562 * 3 2 1 5 5 C 1.32486 * 122.22116 * 0.02562 * 4 3 2 6 6 O 1.35437 * 120.25627 * 180.02562 * 5 4 3 7 7 C 1.40457 * 119.49031 * 0.02562 * 5 4 3 8 8 C 1.47832 * 121.17738 * 179.97438 * 7 5 4 9 9 O 1.21546 * 119.99714 * 89.99623 * 8 7 5 10 10 N 1.34774 * 119.99788 * 269.99925 * 8 7 5 11 11 C 1.46497 * 120.00288 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99744 * 179.97438 * 10 8 7 13 13 H 1.09002 * 109.47092 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47007 * 119.99814 * 12 10 8 15 15 N 1.46500 * 109.47520 * 304.99970 * 14 12 10 16 16 C 1.36935 * 120.00067 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00414 * 0.02562 * 16 15 14 18 18 C 1.38818 * 119.99870 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99958 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99988 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47505 * 59.99960 * 20 18 16 22 22 H 1.48508 * 109.47042 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47186 * 299.99677 * 20 18 16 24 24 C 1.53000 * 109.47023 * 239.99606 * 12 10 8 25 25 C 1.52995 * 117.50099 * 248.74643 * 24 12 10 26 26 C 1.53004 * 117.50029 * 180.08636 * 24 12 10 27 27 C 1.38484 * 119.92790 * 180.26230 * 2 1 3 28 28 C 1.50694 * 121.06184 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47601 * 89.99691 * 1 2 3 30 30 H 1.09007 * 109.47238 * 210.00011 * 1 2 3 31 31 H 1.09005 * 109.46915 * 329.99518 * 1 2 3 32 32 H 0.96698 * 114.00814 * 269.97647 * 6 5 4 33 33 H 1.08998 * 109.47466 * 270.00414 * 11 10 8 34 34 H 1.09002 * 109.47260 * 30.00454 * 11 10 8 35 35 H 1.09000 * 109.47562 * 149.99903 * 11 10 8 36 36 H 1.09004 * 109.47346 * 65.00116 * 14 12 10 37 37 H 1.09002 * 109.47196 * 184.99891 * 14 12 10 38 38 H 0.96995 * 119.99638 * 359.97438 * 15 14 12 39 39 H 0.96992 * 120.00256 * 180.02562 * 19 18 16 40 40 H 1.09003 * 115.54875 * 34.42418 * 24 12 10 41 41 H 1.08997 * 117.49775 * 0.02562 * 25 24 12 42 42 H 1.09000 * 117.49863 * 145.02467 * 25 24 12 43 43 H 1.08993 * 117.49963 * 214.98702 * 26 24 12 44 44 H 1.08999 * 117.49372 * 359.97438 * 26 24 12 45 45 H 1.08994 * 109.47416 * 270.22213 * 28 27 2 46 46 H 1.08994 * 109.47215 * 30.22440 * 28 27 2 47 47 H 1.09002 * 109.47166 * 150.21978 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1428 0.0000 4 7 3.4464 1.2031 -0.0005 5 6 4.2046 0.1166 -0.0015 6 8 5.5545 0.2266 -0.0015 7 6 3.5978 -1.1501 -0.0027 8 6 4.4078 -2.3867 -0.0044 9 8 4.7413 -2.8962 1.0475 10 7 4.7765 -2.9491 -1.1724 11 6 4.3741 -2.3353 -2.4403 12 6 5.5797 -4.1743 -1.1741 13 1 5.7799 -4.4789 -0.1469 14 6 4.8140 -5.2850 -1.8959 15 7 3.4963 -5.4513 -1.2777 16 6 2.6280 -6.3942 -1.7595 17 1 2.9147 -7.0155 -2.5949 18 6 1.3792 -6.5513 -1.1739 19 7 1.0296 -5.7937 -0.1560 20 14 0.1950 -7.8380 -1.8306 21 1 0.8146 -9.1831 -1.7207 22 1 -1.0605 -7.8056 -1.0381 23 1 -0.1104 -7.5486 -3.2548 24 6 6.9035 -3.9152 -1.8961 25 6 7.1208 -4.6071 -3.2432 26 6 7.8880 -5.0812 -2.0065 27 6 2.1979 -1.2002 -0.0055 28 6 1.4671 -2.5180 -0.0121 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 5.9467 0.2590 -0.8848 33 1 3.4148 -2.7464 -2.7547 34 1 4.2818 -1.2571 -2.3089 35 1 5.1263 -2.5454 -3.2006 36 1 4.6917 -5.0189 -2.9459 37 1 5.3713 -6.2188 -1.8203 38 1 3.2390 -4.8934 -0.5271 39 1 0.1573 -5.9037 0.2534 40 1 7.3195 -2.9155 -1.7707 41 1 6.3204 -5.2465 -3.6155 42 1 7.6800 -4.0627 -4.0042 43 1 8.9516 -4.8486 -1.9542 44 1 7.5927 -6.0328 -1.5644 45 1 1.2870 -2.8388 1.0139 46 1 0.5146 -2.4027 -0.5292 47 1 2.0711 -3.2659 -0.5259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485819991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:37 Heat of formation + Delta-G solvation = 7.370678 kcal Electronic energy + Delta-G solvation = -30820.168276 eV Core-core repulsion = 26811.752820 eV Total energy + Delta-G solvation = -4008.415455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73463 -41.11559 -39.14737 -38.86759 -36.47607 -36.03036 -35.76199 -33.80046 -32.93296 -30.10062 -29.49653 -28.97316 -27.86676 -26.45242 -25.09583 -24.06022 -23.71381 -23.10498 -21.59368 -20.21296 -20.04718 -19.29049 -19.00787 -18.41990 -17.86264 -17.19456 -16.76428 -16.41890 -16.17043 -15.82934 -15.47008 -15.19068 -15.03621 -14.83640 -14.59484 -14.39268 -14.05522 -14.03958 -13.86074 -13.84687 -13.61629 -13.31057 -13.26925 -13.00944 -12.97053 -12.86894 -12.71871 -12.38194 -12.27760 -12.20935 -11.98545 -11.73329 -11.70768 -11.26126 -11.01872 -10.91924 -10.83080 -10.54487 -10.51988 -9.77911 -8.92719 -7.84775 -5.14257 -0.71217 -0.44539 1.22351 1.50863 1.52656 1.57745 1.68497 2.04851 2.22230 2.59389 2.89854 2.93154 3.09351 3.24818 3.46493 3.57749 3.64712 3.82242 3.90025 4.03840 4.09736 4.13285 4.19676 4.26403 4.33576 4.41485 4.50210 4.64049 4.65199 4.69841 4.72842 4.80882 4.82270 4.84798 4.88704 4.95425 5.06420 5.11738 5.18129 5.21734 5.34515 5.42747 5.47253 5.57173 6.13930 6.29788 6.34380 6.86784 7.40670 7.41647 8.12643 8.39352 9.35584 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008775 B = 0.005755 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.935827 B = 4864.043690 C = 7445.228521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.068 3.932 3 N -0.221 5.221 4 N -0.274 5.274 5 C 0.287 3.713 6 O -0.471 6.471 7 C -0.151 4.151 8 C 0.577 3.423 9 O -0.567 6.567 10 N -0.576 5.576 11 C 0.080 3.920 12 C 0.167 3.833 13 H 0.069 0.931 14 C 0.145 3.855 15 N -0.740 5.740 16 C -0.249 4.249 17 H 0.071 0.929 18 C -0.058 4.058 19 N -0.946 5.946 20 Si 0.963 3.037 21 H -0.290 1.290 22 H -0.297 1.297 23 H -0.280 1.280 24 C -0.166 4.166 25 C -0.167 4.167 26 C -0.170 4.170 27 C -0.023 4.023 28 C -0.107 4.107 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.425 0.575 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.027 0.973 38 H 0.374 0.626 39 H 0.250 0.750 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 10.801 -7.986 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.078 4.078 3 N -0.066 5.066 4 N -0.125 5.125 5 C 0.100 3.900 6 O -0.280 6.280 7 C -0.166 4.166 8 C 0.363 3.637 9 O -0.446 6.446 10 N -0.306 5.306 11 C -0.062 4.062 12 C 0.064 3.936 13 H 0.087 0.913 14 C 0.018 3.982 15 N -0.384 5.384 16 C -0.381 4.381 17 H 0.089 0.911 18 C -0.252 4.252 19 N -0.595 5.595 20 Si 0.794 3.206 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.206 1.206 24 C -0.185 4.185 25 C -0.203 4.203 26 C -0.207 4.207 27 C -0.035 4.035 28 C -0.164 4.164 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.287 0.713 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.117 0.883 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.898 12.007 -6.990 15.511 hybrid contribution -0.564 -2.368 0.012 2.434 sum 6.334 9.639 -6.978 13.480 Atomic orbital electron populations 1.20897 0.84094 1.05422 1.05492 1.23215 1.00970 0.88010 0.95561 1.72753 0.99948 1.24946 1.08927 1.72940 1.00103 1.26493 1.12967 1.20692 0.86594 0.87607 0.95125 1.84730 1.12234 1.95121 1.35902 1.21288 0.95116 0.94912 1.05289 1.17892 0.78663 0.83114 0.84040 1.90796 1.56797 1.64173 1.32804 1.47603 1.51487 1.25690 1.05788 1.21897 1.01947 0.97364 0.85020 1.20741 0.89475 0.83337 1.00082 0.91264 1.21261 0.86082 0.94914 0.95986 1.42507 1.13445 1.43350 1.39061 1.19430 0.95250 1.11543 1.11852 0.91108 1.25339 0.99282 1.01591 0.98973 1.69775 1.21335 1.42697 1.25708 0.85390 0.78456 0.79294 0.77483 1.21642 1.22337 1.20581 1.22410 0.95291 0.99109 1.01704 1.23246 1.03029 1.03222 0.90816 1.23043 0.98026 0.97464 1.02215 1.21500 0.91486 0.98826 0.91681 1.20848 1.01458 0.90523 1.03551 0.87535 0.89019 0.88324 0.71298 0.93073 0.90994 0.87493 0.93772 0.95525 0.79273 0.94087 0.86146 0.88685 0.86340 0.86676 0.89775 0.90697 0.88286 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.42 71.24 0.67 -1.28 16 2 C 0.07 1.86 6.86 42.61 0.29 2.15 16 3 N -0.22 -6.60 11.40 -47.73 -0.54 -7.14 16 4 N -0.27 -8.53 11.52 -169.58 -1.95 -10.49 16 5 C 0.29 8.63 7.48 85.14 0.64 9.27 16 6 O -0.47 -12.06 13.09 -87.33 -1.14 -13.20 16 7 C -0.15 -4.98 3.96 -19.75 -0.08 -5.05 16 8 C 0.58 21.31 5.18 86.78 0.45 21.76 16 9 O -0.57 -26.28 16.43 -3.86 -0.06 -26.34 16 10 N -0.58 -17.85 2.24 -826.04 -1.85 -19.71 16 11 C 0.08 1.90 9.42 127.77 1.20 3.10 16 12 C 0.17 5.38 2.59 44.99 0.12 5.50 16 13 H 0.07 2.76 6.90 -2.39 -0.02 2.74 16 14 C 0.14 5.33 4.19 86.38 0.36 5.69 16 15 N -0.74 -35.30 5.43 -343.45 -1.87 -37.17 16 16 C -0.25 -12.98 9.99 84.04 0.84 -12.14 16 17 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 18 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 19 N -0.95 -52.32 13.06 21.65 0.28 -52.03 16 20 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.17 -3.75 4.96 -10.79 -0.05 -3.80 16 25 C -0.17 -3.09 9.51 30.62 0.29 -2.80 16 26 C -0.17 -3.44 9.94 30.62 0.30 -3.14 16 27 C -0.02 -0.74 5.96 -19.36 -0.12 -0.85 16 28 C -0.11 -3.75 8.92 71.23 0.64 -3.12 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.09 1.72 6.80 -2.38 -0.02 1.70 16 31 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.42 5.87 9.06 -74.06 -0.67 5.20 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.44 6.57 -2.39 -0.02 1.43 16 35 H 0.11 1.94 7.20 -2.39 -0.02 1.92 16 36 H 0.04 1.51 6.30 -2.39 -0.02 1.49 16 37 H 0.03 1.01 7.44 -2.39 -0.02 1.00 16 38 H 0.37 19.42 5.57 -92.71 -0.52 18.90 16 39 H 0.25 13.60 8.31 -92.71 -0.77 12.82 16 40 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.09 2.04 5.80 -2.39 -0.01 2.03 16 42 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.96 7.66 -2.39 -0.02 1.95 16 45 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 46 H 0.10 3.01 6.83 -2.39 -0.02 2.99 16 47 H 0.08 3.22 5.75 -2.39 -0.01 3.20 16 Total: -1.00 -71.05 382.92 0.75 -70.30 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.16 Total: 37.42 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.02 Total: 12.69 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.94 Total: -126.54 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.21 Total: -39.54 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.05 0.75 -70.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485819991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.667 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds