Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30527 * 119.70318 * 2 1 4 4 N 1.28272 * 122.98656 * 179.97438 * 3 2 1 5 5 C 1.46495 * 119.03261 * 180.02562 * 4 3 2 6 6 C 1.34684 * 121.93569 * 359.72584 * 4 3 2 7 7 O 1.21896 * 120.46771 * 180.29341 * 6 4 3 8 8 C 1.42324 * 119.06303 * 0.52718 * 6 4 3 9 9 C 1.47408 * 121.30068 * 179.76826 * 8 6 4 10 10 O 1.21609 * 120.00014 * 82.59204 * 9 8 6 11 11 N 1.34780 * 120.00280 * 262.59467 * 9 8 6 12 12 C 1.47021 * 125.64286 * 355.06925 * 11 9 8 13 13 C 1.54331 * 107.27031 * 181.09720 * 12 11 9 14 14 C 1.55159 * 102.94099 * 22.18961 * 13 12 11 15 15 H 1.09005 * 111.03266 * 82.59265 * 14 13 12 16 16 C 1.52995 * 111.00324 * 206.42193 * 14 13 12 17 17 N 1.46505 * 109.46905 * 178.65279 * 16 14 13 18 18 C 1.36932 * 119.99947 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00502 * 0.02562 * 18 17 16 20 20 C 1.38818 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99546 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00125 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46911 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47311 * 300.00330 * 22 20 18 25 25 H 1.48503 * 109.47000 * 60.00711 * 22 20 18 26 26 C 1.47416 * 125.65369 * 175.11389 * 11 9 8 27 27 C 1.39323 * 117.40166 * 359.49530 * 8 6 4 28 28 C 1.50697 * 120.99386 * 180.22431 * 27 8 6 29 29 H 1.09001 * 109.47001 * 270.02414 * 1 2 3 30 30 H 1.09002 * 109.47430 * 30.01772 * 1 2 3 31 31 H 1.08999 * 109.47279 * 150.02115 * 1 2 3 32 32 H 1.09000 * 109.47160 * 0.02562 * 5 4 3 33 33 H 1.09004 * 109.47208 * 120.00219 * 5 4 3 34 34 H 1.08996 * 109.47309 * 239.99954 * 5 4 3 35 35 H 1.09003 * 109.88340 * 300.51036 * 12 11 9 36 36 H 1.08996 * 109.88696 * 61.52741 * 12 11 9 37 37 H 1.08999 * 110.71587 * 263.82982 * 13 12 11 38 38 H 1.08998 * 110.71910 * 140.55541 * 13 12 11 39 39 H 1.09005 * 109.47126 * 58.65897 * 16 14 13 40 40 H 1.08999 * 109.47321 * 298.65368 * 16 14 13 41 41 H 0.97002 * 120.00107 * 359.97438 * 17 16 14 42 42 H 0.97000 * 120.00087 * 359.97438 * 21 20 18 43 43 H 1.09003 * 110.36665 * 36.99268 * 26 11 9 44 44 H 1.09001 * 110.36881 * 274.67641 * 26 11 9 45 45 H 1.09008 * 109.46687 * 95.55848 * 28 27 8 46 46 H 1.09000 * 109.47519 * 215.56272 * 28 27 8 47 47 H 1.09003 * 109.46872 * 335.56666 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1338 0.0000 4 7 3.4343 1.2072 0.0005 5 6 4.0707 2.5267 0.0010 6 6 4.2110 0.1069 0.0065 7 8 5.4258 0.2079 0.0122 8 6 3.5935 -1.1753 0.0011 9 6 4.3960 -2.4118 0.0021 10 8 4.8361 -2.8501 1.0476 11 7 4.6419 -3.0567 -1.1556 12 6 4.0899 -2.6979 -2.4701 13 6 4.6233 -3.7282 -3.4878 14 6 4.9911 -4.9416 -2.5934 15 1 4.1123 -5.5493 -2.3777 16 6 6.0923 -5.7850 -3.2391 17 7 6.4353 -6.9007 -2.3538 18 6 7.4031 -7.7959 -2.7240 19 1 7.9139 -7.6793 -3.6684 20 6 7.7286 -8.8528 -1.8849 21 7 7.1065 -8.9947 -0.7337 22 14 9.0483 -10.0744 -2.3903 23 1 9.2055 -11.1007 -1.3286 24 1 8.6524 -10.7336 -3.6606 25 1 10.3360 -9.3603 -2.5835 26 6 5.5081 -4.2390 -1.3133 27 6 2.2009 -1.2163 0.0005 28 6 1.4632 -2.5304 0.0000 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 3.3030 3.3004 0.0014 33 1 4.6911 2.6306 0.8912 34 1 4.6917 2.6310 -0.8887 35 1 3.0011 -2.7377 -2.4384 36 1 4.4161 -1.6957 -2.7482 37 1 5.5062 -3.3441 -3.9987 38 1 3.8484 -3.9986 -4.2050 39 1 6.9748 -5.1665 -3.4028 40 1 5.7391 -6.1742 -4.1940 41 1 5.9774 -7.0049 -1.5050 42 1 6.4210 -8.3606 -0.4715 43 1 5.4092 -4.8994 -0.4518 44 1 6.5468 -3.9340 -1.4412 45 1 1.1982 -2.7987 1.0228 46 1 0.5566 -2.4379 -0.5980 47 1 2.1014 -3.3051 -0.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491827702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = -17.605947 kcal Electronic energy + Delta-G solvation = -29350.771958 eV Core-core repulsion = 25341.273434 eV Total energy + Delta-G solvation = -4009.498523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.35212 -41.27177 -39.35294 -39.03877 -37.11764 -36.78220 -34.26783 -33.48831 -32.01117 -31.57871 -30.10654 -29.18459 -27.82521 -27.01816 -25.76316 -24.76648 -23.58216 -23.43328 -21.61732 -21.06735 -19.76787 -19.36803 -18.81568 -18.13353 -17.81389 -17.63715 -17.09045 -16.64989 -16.27670 -15.92051 -15.72920 -15.22421 -15.14277 -14.97068 -14.82955 -14.64672 -14.37192 -14.20222 -14.01796 -13.85142 -13.81954 -13.65813 -13.53280 -13.17657 -12.96201 -12.83062 -12.68145 -12.58311 -12.44655 -12.36117 -12.04872 -11.87665 -11.76808 -11.66542 -11.25600 -11.05659 -10.95402 -10.92429 -9.95343 -9.66395 -9.14008 -8.41988 -5.36090 -0.96107 0.34542 0.81223 1.33604 1.56850 1.64997 1.67800 1.83829 2.04592 2.70146 2.82116 3.03172 3.23934 3.36276 3.41400 3.46910 3.56232 3.72447 3.92627 4.01123 4.10176 4.21299 4.23911 4.25747 4.26425 4.38697 4.40349 4.49885 4.50455 4.59692 4.64261 4.66848 4.70478 4.78140 4.85467 4.90454 4.91161 4.98172 5.03104 5.07620 5.09565 5.28330 5.42237 5.56465 6.18902 6.30167 6.46422 6.74778 6.91919 7.06700 7.96941 8.07814 9.09864 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002524 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.396085 B =11090.722752 C =11346.258080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.068 3.932 3 N -0.210 5.210 4 N -0.340 5.340 5 C 0.078 3.922 6 C 0.487 3.513 7 O -0.573 6.573 8 C -0.247 4.247 9 C 0.598 3.402 10 O -0.580 6.580 11 N -0.605 5.605 12 C 0.099 3.901 13 C -0.109 4.109 14 C -0.092 4.092 15 H 0.091 0.909 16 C 0.169 3.831 17 N -0.760 5.760 18 C -0.335 4.335 19 H 0.070 0.930 20 C -0.108 4.108 21 N -0.976 5.976 22 Si 1.130 2.870 23 H -0.294 1.294 24 H -0.272 1.272 25 H -0.280 1.280 26 C 0.118 3.882 27 C 0.040 3.960 28 C -0.136 4.136 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.135 0.865 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.018 0.982 40 H 0.040 0.960 41 H 0.359 0.641 42 H 0.242 0.758 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.108 0.892 46 H 0.140 0.860 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.086 25.423 -4.975 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 N -0.035 5.035 4 N -0.158 5.158 5 C -0.061 4.061 6 C 0.286 3.714 7 O -0.454 6.454 8 C -0.261 4.261 9 C 0.386 3.614 10 O -0.459 6.459 11 N -0.337 5.337 12 C -0.022 4.022 13 C -0.147 4.147 14 C -0.111 4.111 15 H 0.109 0.891 16 C 0.042 3.958 17 N -0.404 5.404 18 C -0.466 4.466 19 H 0.088 0.912 20 C -0.298 4.298 21 N -0.624 5.624 22 Si 0.954 3.046 23 H -0.220 1.220 24 H -0.198 1.198 25 H -0.206 1.206 26 C -0.005 4.005 27 C 0.032 3.968 28 C -0.193 4.193 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.191 0.809 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.126 0.874 46 H 0.158 0.842 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.280 24.978 -4.169 32.443 hybrid contribution 0.358 0.463 0.456 0.742 sum -19.921 25.441 -3.713 32.525 Atomic orbital electron populations 1.20883 0.81874 1.06360 1.05515 1.22443 1.00065 0.85187 1.02446 1.70812 0.93953 1.29355 1.09395 1.46756 1.02399 1.09934 1.56737 1.22447 0.99798 0.79105 1.04730 1.17755 0.87688 0.85572 0.80411 1.90951 1.14101 1.86640 1.53740 1.21097 0.95404 0.92777 1.16864 1.17390 0.79051 0.82629 0.82317 1.90803 1.53867 1.68352 1.32923 1.48507 1.47174 1.29873 1.08132 1.22341 1.00095 0.99212 0.80550 1.22672 1.03341 0.91987 0.96654 1.22422 0.98612 0.96385 0.93725 0.89080 1.20698 0.94418 0.87564 0.93090 1.42630 1.45840 1.30450 1.21495 1.20410 1.14735 1.06966 1.04532 0.91218 1.27297 1.05680 1.01919 0.94947 1.70993 1.28169 1.39695 1.23542 0.82618 0.73017 0.73795 0.75197 1.22016 1.19763 1.20615 1.22141 0.93370 0.86002 0.98963 1.21883 0.90371 0.99541 0.84964 1.21346 1.01973 0.89992 1.05939 0.88252 0.88540 0.86905 0.84677 0.89894 0.89161 0.88042 0.91274 0.89883 0.85855 0.96398 0.94232 0.80905 0.94741 0.93226 0.93195 0.87415 0.84227 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.18 9.81 71.23 0.70 0.52 16 2 C 0.07 0.83 6.87 43.19 0.30 1.13 16 3 N -0.21 -3.33 10.71 -47.43 -0.51 -3.83 16 4 N -0.34 -7.14 3.62 -493.02 -1.78 -8.92 16 5 C 0.08 1.08 10.21 127.77 1.30 2.39 16 6 C 0.49 14.78 7.50 85.27 0.64 15.42 16 7 O -0.57 -22.46 16.63 -4.98 -0.08 -22.54 16 8 C -0.25 -7.01 4.89 -19.59 -0.10 -7.11 16 9 C 0.60 21.90 5.60 86.66 0.48 22.38 16 10 O -0.58 -27.28 17.34 -4.06 -0.07 -27.35 16 11 N -0.60 -19.43 3.18 -815.69 -2.59 -22.02 16 12 C 0.10 2.12 6.47 86.73 0.56 2.68 16 13 C -0.11 -2.23 6.42 31.79 0.20 -2.03 16 14 C -0.09 -2.83 3.10 -9.40 -0.03 -2.86 16 15 H 0.09 2.74 8.14 -2.38 -0.02 2.73 16 16 C 0.17 6.67 5.71 86.38 0.49 7.16 16 17 N -0.76 -39.60 5.45 -343.44 -1.87 -41.48 16 18 C -0.34 -19.46 9.99 84.04 0.84 -18.62 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 20 C -0.11 -6.47 5.50 84.86 0.47 -6.01 16 21 N -0.98 -63.72 13.70 21.65 0.30 -63.42 16 22 Si 1.13 53.52 29.92 68.60 2.05 55.58 16 23 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.12 4.41 6.10 86.86 0.53 4.94 16 27 C 0.04 0.69 5.98 -19.17 -0.11 0.58 16 28 C -0.14 -1.55 9.26 71.23 0.66 -0.89 16 29 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.11 -0.31 6.14 -2.39 -0.01 -0.32 16 32 H 0.13 0.90 8.05 -2.39 -0.02 0.88 16 33 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.48 7.65 -2.39 -0.02 1.46 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.02 0.74 8.10 -2.38 -0.02 0.72 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.36 19.69 6.37 -92.71 -0.59 19.10 16 42 H 0.24 15.87 6.77 -92.71 -0.63 15.24 16 43 H 0.05 2.16 7.99 -2.39 -0.02 2.14 16 44 H 0.05 2.07 8.00 -2.39 -0.02 2.05 16 45 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.14 0.26 6.31 -2.39 -0.02 0.25 16 47 H 0.06 1.02 6.46 -2.39 -0.02 1.00 16 Total: -1.00 -94.62 386.28 2.92 -91.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.55 Total: 22.62 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.94 Total: 19.67 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -6.46 Total: -139.68 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -0.15 Total: -49.89 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.05 Total: 55.58 kcal Total: -94.62 2.92 -91.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491827702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.093 kcal (2) G-P(sol) polarization free energy of solvation -94.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds