Wall clock time and date at job start Tue Mar 31 2020 19:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31881 * 119.92977 * 2 1 4 4 N 1.28281 * 122.62106 * 180.02562 * 3 2 1 5 5 C 1.32481 * 122.22248 * 359.71758 * 4 3 2 6 6 O 1.35438 * 120.25880 * 180.29238 * 5 4 3 7 7 C 1.40457 * 119.49100 * 0.54184 * 5 4 3 8 8 C 1.47819 * 121.17986 * 179.75725 * 7 5 4 9 9 O 1.21554 * 120.00378 * 269.71742 * 8 7 5 10 10 N 1.34778 * 120.00329 * 89.71478 * 8 7 5 11 11 C 1.46498 * 120.00618 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.05068 * 33.58354 * 11 10 8 13 13 C 1.54258 * 110.03393 * 272.16985 * 11 10 8 14 14 C 1.54888 * 104.19413 * 264.32442 * 13 11 10 15 15 C 1.54888 * 102.74928 * 322.05687 * 14 13 11 16 16 C 1.53874 * 110.03444 * 154.99971 * 11 10 8 17 17 H 1.09008 * 110.02909 * 359.95142 * 16 11 10 18 18 C 1.53004 * 110.03179 * 238.57288 * 16 11 10 19 19 N 1.46504 * 109.46932 * 175.00163 * 18 16 11 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46986 * 270.00112 * 24 22 20 26 26 H 1.48496 * 109.47029 * 30.00128 * 24 22 20 27 27 H 1.48499 * 109.47352 * 149.99958 * 24 22 20 28 28 C 1.38480 * 119.93122 * 180.02562 * 2 1 3 29 29 C 1.50691 * 121.06044 * 359.97438 * 28 2 1 30 30 H 1.09002 * 109.46910 * 269.97635 * 1 2 3 31 31 H 1.08994 * 109.47258 * 29.97476 * 1 2 3 32 32 H 1.08997 * 109.47213 * 149.98213 * 1 2 3 33 33 H 0.96698 * 114.00458 * 270.25033 * 6 5 4 34 34 H 0.97008 * 119.99615 * 359.97438 * 10 8 7 35 35 H 1.09002 * 110.48955 * 22.99759 * 13 11 10 36 36 H 1.08999 * 110.48987 * 145.51266 * 13 11 10 37 37 H 1.08998 * 110.75755 * 80.37334 * 14 13 11 38 38 H 1.09001 * 110.75547 * 203.74095 * 14 13 11 39 39 H 1.09003 * 110.48415 * 279.26482 * 15 14 13 40 40 H 1.08999 * 110.48837 * 156.62306 * 15 14 13 41 41 H 1.08998 * 109.47524 * 54.99808 * 18 16 11 42 42 H 1.08997 * 109.47093 * 294.99708 * 18 16 11 43 43 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 44 44 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 45 45 H 1.09005 * 109.47168 * 269.97772 * 29 28 2 46 46 H 1.09001 * 109.47665 * 29.97253 * 29 28 2 47 47 H 1.09001 * 109.47138 * 149.98170 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2047 0.1168 0.0045 6 8 5.5546 0.2267 0.0097 7 6 3.5979 -1.1499 -0.0010 8 6 4.4079 -2.3865 -0.0011 9 8 4.7406 -2.8951 -1.0538 10 7 4.7776 -2.9500 1.1660 11 6 5.5809 -4.1752 1.1660 12 1 6.2593 -4.1773 0.3129 13 6 4.6595 -5.4111 1.1115 14 6 4.5045 -5.8351 2.5931 15 6 5.9179 -5.5774 3.1719 16 6 6.3810 -4.2809 2.4761 17 1 6.1724 -3.4202 3.1115 18 6 7.8785 -4.3559 2.1710 19 7 8.6341 -4.3359 3.4260 20 6 10.0020 -4.3944 3.4024 21 1 10.5238 -4.4558 2.4588 22 6 10.7180 -4.3749 4.5915 23 7 10.0822 -4.2997 5.7415 24 14 12.5841 -4.4555 4.5595 25 1 13.0191 -5.8745 4.6097 26 1 13.0853 -3.8279 3.3105 27 1 13.1311 -3.7282 5.7330 28 6 2.1980 -1.2001 -0.0005 29 6 1.4672 -2.5180 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 5.9499 0.2610 -0.8721 34 1 4.5125 -2.5439 2.0062 35 1 3.6909 -5.1465 0.6872 36 1 5.1242 -6.2082 0.5311 37 1 3.7621 -5.2159 3.0965 38 1 4.2432 -6.8907 2.6675 39 1 6.5869 -6.4021 2.9263 40 1 5.8678 -5.4341 4.2513 41 1 8.1679 -3.5017 1.5589 42 1 8.0937 -5.2785 1.6320 43 1 8.1654 -4.2812 4.2734 44 1 9.1132 -4.2582 5.7581 45 1 1.2918 -2.8362 1.0272 46 1 0.5123 -2.4040 -0.5135 47 1 2.0690 -3.2671 -0.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496898879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:51 Heat of formation + Delta-G solvation = -18.951572 kcal Electronic energy + Delta-G solvation = -29133.185040 eV Core-core repulsion = 25123.628166 eV Total energy + Delta-G solvation = -4009.556874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89338 -40.10701 -38.30877 -38.01051 -35.35389 -34.83686 -33.76154 -32.90816 -31.46119 -29.28880 -28.53751 -28.41729 -27.77746 -25.06965 -24.01807 -23.08999 -22.40999 -21.44684 -20.18979 -19.96240 -19.32134 -18.49940 -17.83495 -17.23226 -16.70879 -16.25206 -15.47595 -15.42583 -15.13774 -14.72414 -14.56429 -14.19520 -13.93925 -13.89337 -13.71469 -13.58181 -13.43872 -13.30826 -13.14301 -13.12645 -12.57005 -12.41525 -12.26524 -11.71590 -11.59071 -11.48532 -11.03496 -10.89600 -10.77271 -10.69832 -10.57782 -10.51196 -10.34428 -10.30539 -10.01415 -9.86038 -9.74464 -9.32751 -9.12339 -8.88071 -7.00789 -6.10954 -3.10387 0.03818 0.28241 2.09818 2.67347 2.79393 3.08115 3.51982 3.56941 3.61462 3.70935 3.89244 3.99946 4.21823 4.42441 4.48149 4.62719 4.70728 4.74444 4.80148 4.89658 4.91404 5.05583 5.18615 5.24202 5.29042 5.33190 5.43979 5.45706 5.49321 5.61150 5.64556 5.67505 5.69490 5.73497 5.88224 5.95514 5.98429 6.11312 6.29633 6.37427 6.45146 6.65902 6.75704 6.93506 7.15442 7.80099 7.81242 8.20368 8.75652 9.22463 10.08826 10.23684 11.37820 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.002757 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.803260 B =10153.424414 C =11188.881959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.057 3.943 3 N -0.204 5.204 4 N -0.253 5.253 5 C 0.290 3.710 6 O -0.464 6.464 7 C -0.146 4.146 8 C 0.575 3.425 9 O -0.524 6.524 10 N -0.700 5.700 11 C 0.145 3.855 12 H 0.097 0.903 13 C -0.129 4.129 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.104 4.104 17 H 0.077 0.923 18 C 0.168 3.832 19 N -0.742 5.742 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.083 2.917 25 H -0.295 1.295 26 H -0.295 1.295 27 H -0.288 1.288 28 C -0.031 4.031 29 C -0.127 4.127 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.402 0.598 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.019 0.981 42 H 0.023 0.977 43 H 0.367 0.633 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.354 3.199 -12.370 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.088 4.088 3 N -0.050 5.050 4 N -0.105 5.105 5 C 0.104 3.896 6 O -0.271 6.271 7 C -0.162 4.162 8 C 0.358 3.642 9 O -0.400 6.400 10 N -0.350 5.350 11 C 0.041 3.959 12 H 0.115 0.885 13 C -0.168 4.168 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.124 4.124 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.387 5.387 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.243 4.243 23 N -0.591 5.591 24 Si 0.913 3.087 25 H -0.223 1.223 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.043 4.043 29 C -0.184 4.184 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.272 0.728 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.041 0.959 43 H 0.200 0.800 44 H 0.065 0.935 45 H 0.110 0.890 46 H 0.108 0.892 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.572 4.403 -11.814 24.986 hybrid contribution -1.221 -1.125 -0.799 1.843 sum -22.793 3.277 -12.613 26.255 Atomic orbital electron populations 1.20759 0.86658 1.04481 1.04076 1.22783 0.99444 0.89250 0.97350 1.72860 1.00193 1.24325 1.07592 1.73083 0.99480 1.26373 1.11528 1.20887 0.86525 0.88070 0.94092 1.84754 1.12575 1.95105 1.34637 1.21435 0.94743 0.95537 1.04435 1.17632 0.79337 0.82510 0.84741 1.90849 1.55084 1.63092 1.31020 1.46166 1.53556 1.27396 1.07861 1.21776 0.91907 0.82369 0.99862 0.88546 1.22744 0.99399 0.97326 0.97325 1.22540 0.97585 1.00952 0.95173 1.22385 0.95443 0.97338 0.99908 1.22254 0.96638 0.98932 0.94554 0.90482 1.20657 0.87270 0.98053 0.90023 1.42324 1.03800 1.90465 1.02137 1.20060 0.82991 1.48008 0.95076 0.91766 1.25774 1.06572 1.00482 0.91478 1.70862 1.09050 1.53650 1.25513 0.83197 0.74269 0.76257 0.74934 1.22303 1.22150 1.21368 1.21086 0.91510 0.97967 0.93692 1.21037 1.01024 0.92125 1.04175 0.89366 0.89529 0.89748 0.72775 0.76341 0.91687 0.90434 0.91924 0.91501 0.90650 0.91373 0.96300 0.95911 0.80026 0.93460 0.88984 0.89160 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 9.81 36.01 0.35 -0.12 16 2 C 0.06 0.50 6.86 -82.48 -0.57 -0.06 16 3 N -0.20 -2.42 11.40 33.56 0.38 -2.04 16 4 N -0.25 -3.36 11.52 30.73 0.35 -3.01 16 5 C 0.29 3.61 7.88 -16.44 -0.13 3.48 16 6 O -0.46 -5.59 13.09 -18.01 -0.24 -5.82 16 7 C -0.15 -1.64 5.69 -104.45 -0.59 -2.24 16 8 C 0.57 7.18 5.61 -12.34 -0.07 7.11 16 9 O -0.52 -8.09 16.76 5.32 0.09 -8.00 16 10 N -0.70 -8.12 5.03 -53.68 -0.27 -8.39 16 11 C 0.15 1.88 2.90 -66.82 -0.19 1.69 16 12 H 0.10 1.44 7.10 -51.93 -0.37 1.07 16 13 C -0.13 -1.42 6.54 -25.08 -0.16 -1.58 16 14 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 15 C -0.11 -1.58 6.08 -25.08 -0.15 -1.73 16 16 C -0.10 -1.58 2.73 -89.50 -0.24 -1.82 16 17 H 0.08 1.19 7.62 -51.92 -0.40 0.79 16 18 C 0.17 3.37 5.32 -4.04 -0.02 3.35 16 19 N -0.74 -18.63 5.45 -59.91 -0.33 -18.96 16 20 C -0.33 -9.44 9.99 -15.06 -0.15 -9.59 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 23 N -0.94 -29.35 13.70 55.49 0.76 -28.59 16 24 Si 1.08 26.29 29.92 -169.99 -5.09 21.20 16 25 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C -0.03 -0.27 5.96 -103.85 -0.62 -0.89 16 29 C -0.13 -0.74 9.32 36.00 0.34 -0.40 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.22 6.04 -51.93 -0.31 -0.09 16 33 H 0.41 3.19 9.06 45.56 0.41 3.61 16 34 H 0.40 4.14 8.31 -40.82 -0.34 3.80 16 35 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 43 H 0.37 9.32 6.38 -40.82 -0.26 9.06 16 44 H 0.25 7.73 6.77 -40.82 -0.28 7.45 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.31 6.07 -51.93 -0.31 0.00 16 47 H 0.08 0.60 7.25 -51.93 -0.38 0.22 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -36.45 386.64 -7.04 -43.49 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.06 Total: 10.06 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.48 Total: -5.76 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.90 Total: -60.99 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.15 Total: -13.82 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.45 -7.04 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496898879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.539 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds