Wall clock time and date at job start Tue Mar 31 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39866 * 126.04466 * 2 1 4 4 N 1.30834 * 108.20624 * 179.97438 * 3 2 1 5 5 N 1.40081 * 108.20548 * 359.97438 * 4 3 2 6 6 C 1.46500 * 126.04044 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46762 * 305.02477 * 6 5 4 8 8 O 1.21282 * 120.00230 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99831 * 180.02562 * 7 6 5 10 10 C 1.46508 * 120.00162 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47153 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.36958 * 57.81689 * 11 10 9 13 13 C 1.54556 * 110.32279 * 179.97438 * 11 10 9 14 14 C 1.54770 * 104.07972 * 142.48590 * 13 11 10 15 15 C 1.53353 * 103.67095 * 359.14136 * 14 13 11 16 16 C 1.52308 * 116.12765 * 108.90768 * 15 14 13 17 17 N 1.47293 * 87.68673 * 91.18115 * 16 15 14 18 18 C 1.36927 * 135.93066 * 206.12653 * 17 16 15 19 19 H 1.08006 * 120.00208 * 6.47285 * 18 17 16 20 20 C 1.38815 * 120.00352 * 186.47726 * 18 17 16 21 21 N 1.31617 * 119.99817 * 6.40804 * 20 18 17 22 22 Si 1.86799 * 120.00085 * 186.41286 * 20 18 17 23 23 H 1.48504 * 109.47051 * 265.01587 * 22 20 18 24 24 H 1.48494 * 109.47274 * 25.01873 * 22 20 18 25 25 H 1.48499 * 109.47191 * 145.01998 * 22 20 18 26 26 C 1.47293 * 88.14204 * 26.37760 * 17 16 15 27 27 O 1.43098 * 106.44592 * 337.44868 * 15 14 13 28 28 C 1.34952 * 107.92344 * 0.26145 * 5 4 3 29 29 H 1.09000 * 109.46908 * 89.97847 * 1 2 3 30 30 H 1.08994 * 109.47284 * 209.97597 * 1 2 3 31 31 H 1.08998 * 109.47022 * 329.97835 * 1 2 3 32 32 H 1.08000 * 125.89275 * 359.97395 * 3 2 1 33 33 H 1.09003 * 109.47599 * 185.02376 * 6 5 4 34 34 H 1.08997 * 109.47325 * 65.02101 * 6 5 4 35 35 H 0.97004 * 120.00504 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.46978 * 59.99403 * 10 9 7 37 37 H 1.08997 * 109.46730 * 299.99872 * 10 9 7 38 38 H 1.09006 * 110.50870 * 23.84104 * 13 11 10 39 39 H 1.08994 * 110.62498 * 261.19453 * 13 11 10 40 40 H 1.08995 * 110.58593 * 240.59081 * 14 13 11 41 41 H 1.09005 * 110.71043 * 117.74436 * 14 13 11 42 42 H 1.09001 * 113.51772 * 336.47837 * 16 15 14 43 43 H 1.09004 * 113.57760 * 205.89204 * 16 15 14 44 44 H 0.96991 * 120.00313 * 180.02562 * 21 20 18 45 45 H 1.09006 * 113.50999 * 88.32029 * 26 17 16 46 46 H 1.08997 * 113.51416 * 218.91547 * 26 17 16 47 47 H 1.08005 * 126.12304 * 179.73053 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5755 0.7301 0.0006 5 7 3.5845 -0.6707 0.0015 6 6 4.7746 -1.5250 0.0029 7 6 5.6589 -1.1563 -1.1603 8 8 5.3274 -0.2677 -1.9163 9 7 6.8176 -1.8146 -1.3611 10 6 7.6771 -1.4566 -2.4922 11 6 8.9201 -2.3487 -2.4907 12 1 8.6332 -3.3991 -2.5404 13 6 9.8414 -1.9876 -3.6779 14 6 11.2710 -2.1342 -3.1032 15 6 11.0349 -2.5413 -1.6437 16 6 11.3807 -3.9805 -1.2845 17 7 12.7299 -3.5056 -0.9327 18 6 13.9836 -4.0537 -0.8816 19 1 14.1495 -5.0571 -1.2452 20 6 15.0414 -3.3199 -0.3625 21 7 14.8188 -2.1488 0.1953 22 14 16.7808 -3.9945 -0.4558 23 1 17.1084 -4.6958 0.8116 24 1 16.8818 -4.9481 -1.5896 25 1 17.7352 -2.8759 -0.6634 26 6 12.1401 -2.1850 -0.6537 27 8 9.7156 -2.1000 -1.3083 28 6 2.3031 -1.0942 -0.0043 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8901 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 1.9952 2.1577 -0.0004 33 1 4.4729 -2.5686 -0.0866 34 1 5.3222 -1.3838 0.9347 35 1 7.0826 -2.5256 -0.7567 36 1 7.9792 -0.4130 -2.4030 37 1 7.1292 -1.5978 -3.4238 38 1 9.6633 -0.9620 -4.0015 39 1 9.6899 -2.6800 -4.5059 40 1 11.8040 -1.1849 -3.1549 41 1 11.8218 -2.9111 -3.6335 42 1 11.3669 -4.6573 -2.1388 43 1 10.8190 -4.3643 -0.4329 44 1 15.5579 -1.6358 0.5577 45 1 11.7866 -2.0745 0.3715 46 1 12.7647 -1.3526 -0.9776 47 1 1.9724 -2.1224 -0.0093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502428115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:37 Heat of formation + Delta-G solvation = 36.919434 kcal Electronic energy + Delta-G solvation = -28050.516822 eV Core-core repulsion = 24043.382697 eV Total energy + Delta-G solvation = -4007.134125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17151 -41.53876 -40.48543 -38.20905 -35.72370 -34.64018 -34.14942 -33.11346 -32.46992 -31.00247 -29.56280 -28.48742 -26.69834 -26.45066 -25.12043 -23.73211 -22.50695 -22.27368 -21.37727 -20.98719 -20.46191 -18.75557 -18.34307 -18.07808 -17.54418 -17.04208 -16.67404 -16.55901 -16.35685 -15.95940 -15.75236 -15.41457 -15.13912 -14.79277 -14.54696 -14.40021 -14.13295 -14.00735 -13.91063 -13.67505 -13.46707 -13.26503 -13.04079 -12.95820 -12.85775 -12.65904 -12.60377 -12.41959 -12.33911 -12.02705 -11.92971 -11.60992 -11.42597 -11.36290 -11.16001 -10.89496 -10.42265 -10.32021 -10.16399 -9.20057 -9.01051 -7.97128 -5.30580 0.96220 1.45410 1.47270 1.48989 1.52710 1.56962 1.93627 2.16941 2.41434 2.77290 3.26773 3.45122 3.50917 3.58145 3.69377 3.74207 3.78477 4.01706 4.03953 4.13705 4.17423 4.21554 4.40260 4.48238 4.52702 4.56431 4.64290 4.73076 4.80277 4.88680 4.92620 4.95841 5.02624 5.04004 5.09127 5.12792 5.15102 5.28338 5.33118 5.35196 5.35906 5.42341 5.77039 5.82043 6.06953 6.13275 6.47852 6.80713 6.83579 7.15544 7.53963 8.53097 9.22486 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.001856 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.438211 B =15086.415734 C =15443.050540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.256 4.256 3 C 0.028 3.972 4 N -0.324 5.324 5 N -0.372 5.372 6 C 0.114 3.886 7 C 0.496 3.504 8 O -0.568 6.568 9 N -0.711 5.711 10 C 0.135 3.865 11 C 0.065 3.935 12 H 0.100 0.900 13 C -0.135 4.135 14 C -0.111 4.111 15 C 0.074 3.926 16 C 0.109 3.891 17 N -0.628 5.628 18 C -0.229 4.229 19 H 0.093 0.907 20 C -0.067 4.067 21 N -0.956 5.956 22 Si 0.983 3.017 23 H -0.287 1.287 24 H -0.262 1.262 25 H -0.295 1.295 26 C 0.171 3.829 27 O -0.368 6.368 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.250 0.750 45 H 0.012 0.988 46 H 0.033 0.967 47 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.433 -3.066 -4.249 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.158 4.158 4 N -0.145 5.145 5 N -0.155 5.155 6 C -0.010 4.010 7 C 0.282 3.718 8 O -0.446 6.446 9 N -0.364 5.364 10 C 0.011 3.989 11 C 0.007 3.993 12 H 0.117 0.883 13 C -0.173 4.173 14 C -0.149 4.149 15 C 0.033 3.967 16 C -0.016 4.016 17 N -0.355 5.355 18 C -0.357 4.357 19 H 0.111 0.889 20 C -0.260 4.260 21 N -0.604 5.604 22 Si 0.811 3.189 23 H -0.214 1.214 24 H -0.186 1.186 25 H -0.222 1.222 26 C 0.045 3.955 27 O -0.286 6.286 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.210 0.790 33 H 0.192 0.808 34 H 0.147 0.853 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.051 0.949 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -26.043 -2.104 -4.538 26.519 hybrid contribution 0.934 -0.298 0.648 1.175 sum -25.109 -2.402 -3.890 25.522 Atomic orbital electron populations 1.20066 0.87304 1.03113 1.01937 1.20566 0.98539 0.91470 1.16145 1.24264 0.90013 1.01272 1.00255 1.77425 1.22529 0.90354 1.24156 1.48176 1.05747 1.04213 1.57375 1.21793 0.84612 0.96240 0.98346 1.21116 0.82322 0.81723 0.86687 1.90772 1.73814 1.31768 1.48259 1.45778 1.20412 1.39103 1.31149 1.21393 0.88977 0.98383 0.90110 1.23403 0.90726 0.99766 0.85371 0.88261 1.22946 0.92165 1.04106 0.98123 1.22263 0.98028 1.01973 0.92630 1.23319 0.82511 0.95302 0.95552 1.22837 0.85352 0.95236 0.98207 1.45707 1.01878 1.09404 1.78556 1.19355 0.82837 0.99348 1.34129 0.88936 1.25748 1.02425 0.97769 1.00096 1.70048 1.31351 1.14798 1.44236 0.84993 0.78794 0.77042 0.78080 1.21395 1.18591 1.22184 1.21809 0.89452 0.89796 0.94488 1.88935 1.19660 1.83953 1.36094 1.23010 0.82855 1.01815 1.01430 0.91959 0.90614 0.91431 0.79003 0.80776 0.85268 0.74441 0.92934 0.88816 0.89852 0.87376 0.91973 0.90140 0.91660 0.93926 0.94163 0.97041 0.94870 0.77009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.37 71.24 0.74 0.05 16 2 C -0.26 -4.39 6.10 -20.14 -0.12 -4.51 16 3 C 0.03 0.63 11.96 85.24 1.02 1.65 16 4 N -0.32 -9.09 11.64 -57.03 -0.66 -9.75 16 5 N -0.37 -7.69 3.40 -351.78 -1.20 -8.88 16 6 C 0.11 1.60 6.99 85.63 0.60 2.19 16 7 C 0.50 10.93 7.86 87.66 0.69 11.62 16 8 O -0.57 -18.64 15.71 -3.04 -0.05 -18.69 16 9 N -0.71 -13.10 5.52 -463.05 -2.55 -15.65 16 10 C 0.14 2.84 5.28 86.38 0.46 3.29 16 11 C 0.06 1.40 3.35 31.12 0.10 1.50 16 12 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 13 C -0.14 -2.88 6.65 31.73 0.21 -2.67 16 14 C -0.11 -3.43 6.50 31.32 0.20 -3.23 16 15 C 0.07 2.70 1.39 -11.03 -0.02 2.69 16 16 C 0.11 4.24 8.18 83.49 0.68 4.92 16 17 N -0.63 -32.00 3.75 -740.10 -2.78 -34.78 16 18 C -0.23 -12.65 10.73 84.04 0.90 -11.75 16 19 H 0.09 4.79 7.84 -2.91 -0.02 4.76 16 20 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 21 N -0.96 -58.55 11.82 21.65 0.26 -58.29 16 22 Si 0.98 45.15 29.56 68.60 2.03 47.18 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 26 C 0.17 8.43 6.80 83.59 0.57 8.99 16 27 O -0.37 -11.56 11.12 -148.98 -1.66 -13.22 16 28 C 0.05 0.81 11.36 83.54 0.95 1.76 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 33 H 0.17 0.58 8.07 -2.39 -0.02 0.56 16 34 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 5.65 8.47 -92.71 -0.79 4.87 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.68 7.87 -2.38 -0.02 1.66 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 2.10 8.11 -2.39 -0.02 2.08 16 41 H 0.08 2.51 7.92 -2.38 -0.02 2.49 16 42 H 0.07 2.23 8.07 -2.39 -0.02 2.22 16 43 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.25 14.83 8.31 -92.72 -0.77 14.06 16 45 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.03 1.82 7.59 -2.39 -0.02 1.80 16 47 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -84.96 392.64 1.03 -83.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.19 Total: 14.99 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.45 Total: 13.16 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -6.93 Total: -127.36 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.70 Total: -31.91 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -84.96 1.03 -83.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502428115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.853 kcal (2) G-P(sol) polarization free energy of solvation -84.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds