Wall clock time and date at job start Tue Mar 31 2020 19:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31880 * 119.93692 * 2 1 4 4 N 1.28276 * 122.63056 * 180.02562 * 3 2 1 5 5 C 1.32488 * 122.21544 * 0.02562 * 4 3 2 6 6 O 1.35450 * 120.25013 * 180.02562 * 5 4 3 7 7 C 1.40448 * 119.49486 * 359.97438 * 5 4 3 8 8 C 1.47825 * 121.17911 * 179.97438 * 7 5 4 9 9 O 1.21550 * 119.99998 * 90.00161 * 8 7 5 10 10 N 1.34786 * 119.99969 * 270.00181 * 8 7 5 11 11 C 1.47485 * 127.03052 * 0.02562 * 10 8 7 12 12 C 1.54005 * 107.24392 * 154.61643 * 11 10 8 13 13 C 1.54616 * 105.04550 * 1.20635 * 12 11 10 14 14 C 1.53004 * 110.74066 * 263.33330 * 13 12 11 15 15 C 1.52999 * 110.73839 * 140.18699 * 13 12 11 16 16 N 1.46503 * 109.47125 * 179.97438 * 15 13 12 17 17 C 1.36936 * 120.00344 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99583 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00492 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00142 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99602 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47461 * 90.00125 * 21 19 17 23 23 H 1.48502 * 109.47005 * 209.99705 * 21 19 17 24 24 H 1.48496 * 109.47328 * 329.99918 * 21 19 17 25 25 C 1.48377 * 127.17223 * 179.82083 * 10 8 7 26 26 C 1.38480 * 119.93448 * 180.26597 * 2 1 3 27 27 C 1.50705 * 121.05834 * 0.02562 * 26 2 1 28 28 H 1.08993 * 109.47631 * 89.99295 * 1 2 3 29 29 H 1.08993 * 109.46735 * 210.00021 * 1 2 3 30 30 H 1.09004 * 109.46739 * 329.99476 * 1 2 3 31 31 H 0.96700 * 113.99696 * 269.97517 * 6 5 4 32 32 H 1.09002 * 109.91598 * 35.15729 * 11 10 8 33 33 H 1.08999 * 109.91369 * 274.06810 * 11 10 8 34 34 H 1.08993 * 110.32614 * 120.10270 * 12 11 10 35 35 H 1.09002 * 110.32577 * 242.21487 * 12 11 10 36 36 H 1.09005 * 109.46948 * 59.99904 * 14 13 12 37 37 H 1.08999 * 109.46853 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.46580 * 300.00009 * 14 13 12 39 39 H 1.09002 * 109.47265 * 300.00125 * 15 13 12 40 40 H 1.09000 * 109.46800 * 60.00464 * 15 13 12 41 41 H 0.97005 * 119.99806 * 0.02562 * 16 15 13 42 42 H 0.97001 * 120.00268 * 179.97438 * 20 19 17 43 43 H 1.09005 * 110.51886 * 100.79006 * 25 10 8 44 44 H 1.09006 * 110.83140 * 337.82723 * 25 10 8 45 45 H 1.09001 * 109.47152 * 270.22881 * 27 26 2 46 46 H 1.09003 * 109.46851 * 30.22491 * 27 26 2 47 47 H 1.08994 * 109.47347 * 150.22386 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1428 0.0000 4 7 3.4465 1.2031 -0.0005 5 6 4.2047 0.1166 -0.0015 6 8 5.5547 0.2267 -0.0015 7 6 3.5979 -1.1500 -0.0016 8 6 4.4079 -2.3866 -0.0033 9 8 4.7421 -2.8956 1.0487 10 7 4.7758 -2.9496 -1.1713 11 6 4.4593 -2.4670 -2.5286 12 6 5.5584 -2.9957 -3.4690 13 6 6.4939 -3.8300 -2.5638 14 6 7.6982 -2.9987 -2.1167 15 6 6.9520 -5.1004 -3.2827 16 7 7.8358 -5.8683 -2.4020 17 6 8.3721 -7.0521 -2.8333 18 1 8.1439 -7.4196 -3.8229 19 6 9.2091 -7.7799 -1.9987 20 7 9.7249 -8.9175 -2.4134 21 14 9.6032 -7.1447 -0.2868 22 1 8.6004 -7.6645 0.6772 23 1 10.9578 -7.6044 0.1120 24 1 9.5649 -5.6602 -0.2887 25 6 5.5853 -4.1790 -1.3583 26 6 2.1980 -1.2000 -0.0056 27 6 1.4672 -2.5180 -0.0123 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 5.9467 0.2590 -0.8849 32 1 4.4513 -1.3771 -2.5427 33 1 3.4877 -2.8493 -2.8414 34 1 5.1224 -3.6248 -4.2449 35 1 6.1043 -2.1657 -3.9176 36 1 7.3520 -2.1288 -1.5584 37 1 8.3425 -3.6055 -1.4806 38 1 8.2575 -2.6694 -2.9924 39 1 6.0827 -5.7047 -3.5422 40 1 7.4906 -4.8298 -4.1909 41 1 8.0405 -5.5384 -1.5131 42 1 10.3101 -9.4259 -1.8303 43 1 4.9427 -5.0274 -1.5939 44 1 6.1850 -4.3868 -0.4720 45 1 1.2870 -2.8388 1.0138 46 1 0.5146 -2.4026 -0.5294 47 1 2.0713 -3.2658 -0.5260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699849607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:36 Heat of formation + Delta-G solvation = 1.821698 kcal Electronic energy + Delta-G solvation = -29843.227256 eV Core-core repulsion = 25834.571178 eV Total energy + Delta-G solvation = -4008.656077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93454 -40.24287 -38.36752 -38.10514 -35.39610 -35.09528 -33.25603 -32.59002 -30.90028 -29.60592 -29.22102 -28.46296 -27.06131 -26.18729 -24.47600 -23.40747 -23.08888 -21.83323 -20.04320 -19.36307 -19.20010 -18.55164 -17.94279 -17.15006 -16.60899 -16.02384 -15.95060 -15.22563 -14.77739 -14.60960 -14.56747 -14.20842 -13.96703 -13.85557 -13.61045 -13.45923 -13.36376 -13.21066 -13.18877 -12.72556 -12.64310 -12.52612 -12.50027 -12.31521 -11.93649 -11.87628 -11.61463 -11.43966 -10.96333 -10.82570 -10.70792 -10.62378 -10.45042 -10.29488 -10.12229 -9.87123 -9.76614 -9.60834 -8.98515 -8.92512 -7.28813 -5.80983 -3.17136 0.03460 0.25081 2.11523 2.49466 2.74045 2.97601 3.35879 3.39420 3.45103 3.60140 3.78724 3.89122 4.17281 4.33179 4.37664 4.50724 4.56070 4.66542 4.71065 4.87331 4.96802 4.97179 5.01636 5.10055 5.16788 5.22278 5.23808 5.37602 5.42879 5.44798 5.50430 5.57058 5.63772 5.68814 5.73719 5.75852 5.81577 5.97822 6.10419 6.20601 6.41300 6.52743 6.57977 6.85293 7.17292 7.73092 7.93779 8.17387 8.37712 9.16104 9.88614 10.07238 11.37232 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002965 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.879916 B = 9442.131422 C = 9472.909228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.060 3.940 3 N -0.206 5.206 4 N -0.253 5.253 5 C 0.287 3.713 6 O -0.463 6.463 7 C -0.136 4.136 8 C 0.589 3.411 9 O -0.512 6.512 10 N -0.611 5.611 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.083 4.083 14 C -0.132 4.132 15 C 0.174 3.826 16 N -0.755 5.755 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.007 3.993 20 N -0.933 5.933 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.117 3.883 26 C -0.032 4.032 27 C -0.125 4.125 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.407 0.593 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.923 18.936 -0.665 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.085 4.085 3 N -0.051 5.051 4 N -0.104 5.104 5 C 0.101 3.899 6 O -0.269 6.269 7 C -0.151 4.151 8 C 0.374 3.626 9 O -0.387 6.387 10 N -0.345 5.345 11 C -0.022 4.022 12 C -0.160 4.160 13 C -0.084 4.084 14 C -0.189 4.189 15 C 0.046 3.954 16 N -0.401 5.401 17 C -0.376 4.376 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.710 3.290 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.004 4.004 26 C -0.043 4.043 27 C -0.182 4.182 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.266 0.734 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.698 20.105 0.455 28.151 hybrid contribution 0.771 -1.107 0.776 1.557 sum -18.928 18.998 1.231 26.846 Atomic orbital electron populations 1.20736 0.86580 1.04587 1.04015 1.22791 0.99444 0.89156 0.97144 1.72845 1.00115 1.24317 1.07867 1.73065 0.99529 1.26239 1.11605 1.20833 0.86348 0.88090 0.94640 1.84796 1.12816 1.95154 1.34093 1.21321 0.94657 0.95332 1.03826 1.17197 0.79595 0.82682 0.83106 1.90883 1.54775 1.62694 1.30348 1.48854 1.53018 1.27775 1.04841 1.22141 0.99342 0.98802 0.81890 1.22570 0.95754 1.00284 0.97408 1.21933 0.94824 0.96979 0.94692 1.21740 0.96837 0.98852 1.01511 1.20605 0.93465 0.88457 0.92827 1.42759 1.57337 1.24617 1.15390 1.19017 1.22371 0.95311 1.00867 0.89174 1.24649 0.99580 0.96732 0.97913 1.69691 1.36599 1.15077 1.36671 0.86632 0.77935 0.78349 0.86063 1.20924 1.21623 1.20335 1.22754 0.92927 0.85428 0.99277 1.21116 0.91478 0.98024 0.93686 1.21002 1.00798 0.91919 1.04447 0.89402 0.89756 0.89462 0.73386 0.91904 0.91032 0.89612 0.90166 0.93492 0.91676 0.92035 0.95132 0.94893 0.80476 0.92999 0.89808 0.89405 0.88853 0.89205 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 9.42 36.00 0.34 -0.13 16 2 C 0.06 0.52 6.86 -82.48 -0.57 -0.04 16 3 N -0.21 -2.37 11.40 33.56 0.38 -1.99 16 4 N -0.25 -3.24 11.52 30.73 0.35 -2.88 16 5 C 0.29 3.49 7.88 -16.44 -0.13 3.36 16 6 O -0.46 -5.29 13.09 -18.04 -0.24 -5.53 16 7 C -0.14 -1.59 4.69 -104.45 -0.49 -2.08 16 8 C 0.59 8.08 5.69 -12.33 -0.07 8.01 16 9 O -0.51 -9.32 17.34 5.32 0.09 -9.22 16 10 N -0.61 -7.17 3.23 -170.66 -0.55 -7.72 16 11 C 0.10 0.85 6.73 -2.98 -0.02 0.83 16 12 C -0.12 -1.09 6.09 -25.36 -0.15 -1.25 16 13 C -0.08 -1.08 0.64 -152.63 -0.10 -1.18 16 14 C -0.13 -1.79 8.33 37.16 0.31 -1.48 16 15 C 0.17 2.96 5.10 -4.04 -0.02 2.94 16 16 N -0.75 -16.85 4.96 -59.91 -0.30 -17.15 16 17 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 18 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 19 C 0.01 0.21 5.50 -17.44 -0.10 0.11 16 20 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 21 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C 0.12 1.63 5.69 -1.98 -0.01 1.62 16 26 C -0.03 -0.29 5.96 -103.84 -0.62 -0.91 16 27 C -0.12 -0.83 8.92 36.01 0.32 -0.51 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.25 6.80 -51.93 -0.35 -0.10 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.41 2.65 9.06 45.56 0.41 3.06 16 32 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 36 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.06 1.07 6.69 -51.93 -0.35 0.73 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.36 8.07 4.07 -40.82 -0.17 7.90 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 44 H 0.09 1.47 7.79 -51.93 -0.40 1.06 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.33 6.83 -51.93 -0.35 -0.02 16 47 H 0.08 0.61 7.24 -51.93 -0.38 0.24 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -36.36 383.27 -6.07 -42.43 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.19 Total: 4.65 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.46 Total: 2.41 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.66 Total: -57.92 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.14 Total: -14.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.36 -6.07 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699849607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.257 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds