Wall clock time and date at job start Tue Mar 31 2020 19:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31885 * 119.93026 * 2 1 4 4 N 1.28279 * 122.62131 * 180.02562 * 3 2 1 5 5 C 1.32483 * 122.21989 * 359.97438 * 4 3 2 6 6 O 1.35446 * 120.24912 * 179.97438 * 5 4 3 7 7 C 1.40448 * 119.49743 * 359.97438 * 5 4 3 8 8 C 1.47829 * 121.18283 * 179.97438 * 7 5 4 9 9 O 1.21546 * 119.99793 * 90.00053 * 8 7 5 10 10 N 1.34778 * 119.99879 * 269.72572 * 8 7 5 11 11 C 1.46929 * 120.62978 * 354.34179 * 10 8 7 12 12 C 1.52764 * 109.00220 * 233.57821 * 11 10 8 13 13 C 1.53033 * 109.38570 * 305.59091 * 12 11 10 14 14 C 1.53041 * 109.54013 * 61.24146 * 13 12 11 15 15 C 1.46920 * 120.62800 * 174.61610 * 10 8 7 16 16 H 1.08999 * 109.59108 * 246.30178 * 15 10 8 17 17 C 1.53001 * 109.58888 * 6.58604 * 15 10 8 18 18 N 1.46511 * 109.46702 * 292.87836 * 17 15 10 19 19 C 1.36934 * 119.99592 * 185.82737 * 18 17 15 20 20 H 1.08005 * 120.00394 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00026 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99759 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00349 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46918 * 90.00109 * 23 21 19 25 25 H 1.48496 * 109.47410 * 209.99756 * 23 21 19 26 26 H 1.48506 * 109.47218 * 330.00135 * 23 21 19 27 27 C 1.38473 * 119.93339 * 180.27658 * 2 1 3 28 28 C 1.50703 * 121.06101 * 0.02562 * 27 2 1 29 29 H 1.08993 * 109.47534 * 90.00097 * 1 2 3 30 30 H 1.09005 * 109.46815 * 210.00525 * 1 2 3 31 31 H 1.09007 * 109.47280 * 330.00155 * 1 2 3 32 32 H 0.96703 * 114.00503 * 270.01958 * 6 5 4 33 33 H 1.08992 * 109.59008 * 353.41321 * 11 10 8 34 34 H 1.08998 * 109.58381 * 113.84510 * 11 10 8 35 35 H 1.09003 * 109.55962 * 185.54930 * 12 11 10 36 36 H 1.09000 * 109.38234 * 65.52221 * 12 11 10 37 37 H 1.09002 * 109.46249 * 301.21390 * 13 12 11 38 38 H 1.09007 * 109.46262 * 181.26046 * 13 12 11 39 39 H 1.08998 * 109.49545 * 178.68058 * 14 13 12 40 40 H 1.09006 * 109.49774 * 58.58778 * 14 13 12 41 41 H 1.08998 * 109.47030 * 52.87374 * 17 15 10 42 42 H 1.08993 * 109.47371 * 172.88063 * 17 15 10 43 43 H 0.96999 * 119.99990 * 5.82495 * 18 17 15 44 44 H 0.96998 * 120.00111 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47008 * 270.21888 * 28 27 2 46 46 H 1.08995 * 109.46864 * 30.22045 * 28 27 2 47 47 H 1.09004 * 109.47288 * 150.22052 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1430 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2046 0.1168 -0.0005 6 8 5.5546 0.2269 -0.0016 7 6 3.5979 -1.1499 0.0005 8 6 4.4079 -2.3865 0.0000 9 8 4.7421 -2.8946 1.0524 10 7 4.7712 -2.9536 -1.1675 11 6 4.2684 -2.4273 -2.4438 12 6 3.6277 -3.5669 -3.2340 13 6 4.6320 -4.7126 -3.3781 14 6 5.0118 -5.2377 -1.9916 15 6 5.6726 -4.1136 -1.1877 16 1 6.6172 -3.8343 -1.6544 17 6 5.9288 -4.5892 0.2438 18 7 6.6964 -3.5717 0.9663 19 6 7.1486 -3.8269 2.2334 20 1 6.9399 -4.7783 2.7000 21 6 7.8764 -2.8631 2.9179 22 7 8.1313 -1.7038 2.3491 23 14 8.4927 -3.2108 4.6466 24 1 9.8433 -3.8243 4.5765 25 1 8.5656 -1.9399 5.4112 26 1 7.5594 -4.1448 5.3264 27 6 2.1980 -1.2000 -0.0058 28 6 1.4672 -2.5180 -0.0127 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 5.9460 0.2587 -0.8853 33 1 3.5247 -1.6538 -2.2526 34 1 5.0952 -2.0084 -3.0173 35 1 3.3399 -3.2089 -4.2225 36 1 2.7439 -3.9223 -2.7043 37 1 5.5256 -4.3504 -3.8866 38 1 4.1839 -5.5173 -3.9609 39 1 5.7091 -6.0689 -2.0959 40 1 4.1151 -5.5773 -1.4731 41 1 4.9765 -4.7521 0.7484 42 1 6.4925 -5.5217 0.2215 43 1 6.8843 -2.7174 0.5471 44 1 8.6401 -1.0305 2.8272 45 1 1.2872 -2.8390 1.0132 46 1 0.5147 -2.4025 -0.5298 47 1 2.0713 -3.2657 -0.5267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752829134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:52 Heat of formation + Delta-G solvation = 37.794034 kcal Electronic energy + Delta-G solvation = -31361.840667 eV Core-core repulsion = 27354.744467 eV Total energy + Delta-G solvation = -4007.096200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.42538 -39.94676 -37.53512 -37.01373 -35.15262 -34.29247 -32.90175 -32.28146 -31.77874 -29.86944 -28.66584 -27.92625 -26.30927 -24.67496 -24.06082 -22.76360 -22.54096 -21.48713 -20.63604 -19.11102 -18.70867 -17.96752 -17.18752 -16.47809 -16.04818 -15.53286 -14.90388 -14.80288 -14.59595 -14.48330 -14.39839 -13.83867 -13.72270 -13.49218 -13.38558 -13.14927 -13.00561 -12.90340 -12.77174 -12.71661 -12.33651 -12.27983 -12.14199 -11.83220 -11.77437 -11.15553 -11.06651 -11.01434 -10.78959 -10.71098 -10.69826 -10.38276 -9.91606 -9.76018 -9.56715 -9.49642 -9.31752 -8.74292 -8.49838 -8.19588 -6.51294 -5.54249 -2.74799 0.63406 0.81730 3.01979 3.13777 3.34821 3.55099 3.57938 3.59752 3.61890 4.15914 4.35483 4.44016 4.64576 4.71398 4.72226 4.79167 4.84118 4.98139 5.08113 5.20439 5.27430 5.31213 5.32594 5.34525 5.38487 5.51031 5.63338 5.66715 5.70509 5.74216 5.79292 5.80861 5.84650 5.90031 5.96706 5.98335 6.04740 6.14999 6.26862 6.47521 6.56370 6.83020 7.15302 7.59910 7.74413 7.87120 8.61593 8.71021 8.73738 9.73530 10.30896 10.64895 11.67934 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.005512 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.425217 B = 5078.768614 C = 6756.650838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.050 3.950 3 N -0.216 5.216 4 N -0.260 5.260 5 C 0.288 3.712 6 O -0.444 6.444 7 C -0.119 4.119 8 C 0.518 3.482 9 O -0.410 6.410 10 N -0.610 5.610 11 C 0.111 3.889 12 C -0.132 4.132 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.144 3.856 16 H 0.072 0.928 17 C 0.158 3.842 18 N -0.690 5.690 19 C -0.220 4.220 20 H 0.065 0.935 21 C -0.015 4.015 22 N -0.926 5.926 23 Si 0.900 3.100 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.285 1.285 27 C -0.048 4.048 28 C -0.118 4.118 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.019 0.981 43 H 0.382 0.618 44 H 0.251 0.749 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 -2.589 -16.004 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 N -0.062 5.062 4 N -0.113 5.113 5 C 0.102 3.898 6 O -0.248 6.248 7 C -0.135 4.135 8 C 0.300 3.700 9 O -0.274 6.274 10 N -0.349 5.349 11 C -0.012 4.012 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.041 3.959 16 H 0.089 0.911 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.083 0.917 21 C -0.211 4.211 22 N -0.575 5.575 23 Si 0.732 3.268 24 H -0.221 1.221 25 H -0.220 1.220 26 H -0.211 1.211 27 C -0.059 4.059 28 C -0.175 4.175 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.216 0.784 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.455 -1.353 -14.571 21.284 hybrid contribution 0.766 -1.115 0.411 1.414 sum -14.689 -2.468 -14.160 20.552 Atomic orbital electron populations 1.20657 0.87278 1.04140 1.03421 1.22656 0.98999 0.89561 0.98298 1.72786 1.00452 1.24317 1.08664 1.72991 0.99351 1.26866 1.12045 1.21008 0.86820 0.88197 0.93733 1.85013 1.11920 1.94975 1.32850 1.21651 0.94457 0.96333 1.01030 1.17614 0.83153 0.84202 0.85034 1.91305 1.45796 1.59616 1.30720 1.47736 1.49707 1.32723 1.04697 1.21472 0.98353 0.96072 0.85349 1.21830 0.98912 0.96320 1.00004 1.21495 0.99089 0.97712 0.97183 1.21916 1.01360 0.97974 0.95363 1.21530 0.91376 0.84369 0.98629 0.91055 1.20911 0.96011 0.92193 0.87817 1.42337 1.60826 1.15047 1.15124 1.19095 1.25426 0.98940 0.91724 0.91742 1.24642 1.02026 0.96318 0.98098 1.69653 1.44872 1.05735 1.37200 0.86287 0.78480 0.76663 0.85377 1.22072 1.22036 1.21089 1.21026 0.91895 0.97472 0.95529 1.20907 1.00167 0.92428 1.04004 0.89969 0.90143 0.89877 0.74194 0.91191 0.91774 0.91082 0.91580 0.91773 0.91874 0.90701 0.91505 0.94593 0.96299 0.78414 0.93917 0.89397 0.90030 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.42 36.00 0.34 -0.46 16 2 C 0.05 0.65 6.86 -82.48 -0.57 0.09 16 3 N -0.22 -3.48 11.40 33.56 0.38 -3.10 16 4 N -0.26 -4.71 11.52 30.73 0.35 -4.36 16 5 C 0.29 5.25 7.88 -16.44 -0.13 5.12 16 6 O -0.44 -8.50 13.09 -18.03 -0.24 -8.73 16 7 C -0.12 -2.00 3.85 -104.45 -0.40 -2.40 16 8 C 0.52 9.55 4.77 -12.34 -0.06 9.49 16 9 O -0.41 -9.82 10.76 5.33 0.06 -9.76 16 10 N -0.61 -8.99 2.98 -166.60 -0.50 -9.48 16 11 C 0.11 1.19 6.29 -3.93 -0.02 1.17 16 12 C -0.13 -1.12 6.06 -26.84 -0.16 -1.28 16 13 C -0.12 -1.04 5.88 -26.69 -0.16 -1.19 16 14 C -0.13 -1.45 5.37 -26.61 -0.14 -1.59 16 15 C 0.14 2.23 2.95 -67.60 -0.20 2.03 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 17 C 0.16 3.27 4.87 -4.03 -0.02 3.25 16 18 N -0.69 -18.05 3.15 -59.90 -0.19 -18.24 16 19 C -0.22 -6.49 9.69 -15.06 -0.15 -6.64 16 20 H 0.06 1.88 7.83 -52.48 -0.41 1.46 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.44 13.06 55.49 0.72 -28.72 16 23 Si 0.90 23.95 29.55 -169.99 -5.02 18.93 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 26 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 27 C -0.05 -0.65 5.57 -103.84 -0.58 -1.23 16 28 C -0.12 -1.21 8.92 36.01 0.32 -0.89 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.53 6.80 -51.93 -0.35 0.18 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.40 5.42 9.06 45.56 0.41 5.83 16 33 H 0.07 0.75 6.09 -51.93 -0.32 0.43 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.81 6.49 -51.93 -0.34 0.47 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.38 10.60 6.82 -40.82 -0.28 10.32 16 44 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.56 6.83 -51.93 -0.35 0.21 16 47 H 0.08 0.85 7.14 -51.93 -0.37 0.48 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -37.98 373.66 -7.03 -45.00 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.21 Total: 7.94 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.02 Total: 4.90 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.78 Total: -63.90 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.18 Total: -18.50 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.98 -7.03 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752829134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.798 kcal (2) G-P(sol) polarization free energy of solvation -37.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds