Wall clock time and date at job start Tue Mar 31 2020 19:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31877 * 119.93196 * 2 1 4 4 N 1.28283 * 122.62491 * 179.97438 * 3 2 1 5 5 C 1.32487 * 122.21519 * 0.02562 * 4 3 2 6 6 O 1.35446 * 120.24971 * 179.97438 * 5 4 3 7 7 C 1.40449 * 119.49690 * 359.97438 * 5 4 3 8 8 C 1.47827 * 121.17789 * 180.02562 * 7 5 4 9 9 O 1.21552 * 120.00243 * 89.99673 * 8 7 5 10 10 N 1.34778 * 119.99716 * 270.00023 * 8 7 5 11 11 C 1.46962 * 120.65653 * 5.61976 * 10 8 7 12 12 C 1.53190 * 108.89194 * 126.46571 * 11 10 8 13 13 C 1.53043 * 109.31026 * 54.55458 * 12 11 10 14 14 C 1.53033 * 109.54232 * 298.63870 * 13 12 11 15 15 C 1.46932 * 120.63143 * 185.43761 * 10 8 7 16 16 H 1.09005 * 109.58626 * 113.67390 * 15 10 8 17 17 C 1.53000 * 109.58486 * 353.39716 * 15 10 8 18 18 N 1.46490 * 109.47060 * 180.41304 * 17 15 10 19 19 C 1.36942 * 119.99912 * 174.97724 * 18 17 15 20 20 H 1.07995 * 119.99977 * 359.97438 * 19 18 17 21 21 C 1.38810 * 119.99969 * 180.27373 * 19 18 17 22 22 N 1.31623 * 120.00062 * 359.72699 * 21 19 18 23 23 Si 1.86800 * 120.00304 * 179.72254 * 21 19 18 24 24 H 1.48504 * 109.46917 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47333 * 119.99862 * 23 21 19 26 26 H 1.48497 * 109.47325 * 240.00051 * 23 21 19 27 27 C 1.38488 * 119.93044 * 180.27800 * 2 1 3 28 28 C 1.50695 * 121.06381 * 0.02994 * 27 2 1 29 29 H 1.08999 * 109.47134 * 90.00576 * 1 2 3 30 30 H 1.09001 * 109.47217 * 210.00391 * 1 2 3 31 31 H 1.08998 * 109.47047 * 329.99896 * 1 2 3 32 32 H 0.96705 * 114.00570 * 270.01941 * 6 5 4 33 33 H 1.09003 * 109.59165 * 6.60281 * 11 10 8 34 34 H 1.09006 * 109.58091 * 246.32072 * 11 10 8 35 35 H 1.09002 * 109.49639 * 294.61237 * 12 11 10 36 36 H 1.08998 * 109.50007 * 174.50881 * 12 11 10 37 37 H 1.09004 * 109.45794 * 178.61388 * 13 12 11 38 38 H 1.08998 * 109.44560 * 58.65322 * 13 12 11 39 39 H 1.09006 * 109.49844 * 301.41993 * 14 13 12 40 40 H 1.08998 * 109.53151 * 181.33602 * 14 13 12 41 41 H 1.09002 * 109.47199 * 60.40960 * 17 15 10 42 42 H 1.09004 * 109.46824 * 300.41526 * 17 15 10 43 43 H 0.97000 * 120.00129 * 354.97582 * 18 17 15 44 44 H 0.96998 * 120.00278 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.46679 * 270.24321 * 28 27 2 46 46 H 1.09001 * 109.46600 * 30.23757 * 28 27 2 47 47 H 1.08993 * 109.47570 * 150.24197 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2031 0.0005 5 6 4.2046 0.1167 0.0005 6 8 5.5546 0.2267 0.0005 7 6 3.5978 -1.1500 0.0006 8 6 4.4079 -2.3866 0.0012 9 8 4.7405 -2.8948 1.0541 10 7 4.7776 -2.9505 -1.1658 11 6 4.4899 -2.2849 -2.4441 12 6 5.7919 -2.1575 -3.2411 13 6 6.4359 -3.5386 -3.3825 14 6 6.7707 -4.0918 -1.9954 15 6 5.4797 -4.2411 -1.1843 16 1 4.8436 -4.9966 -1.6456 17 6 5.8190 -4.6609 0.2473 18 7 6.5276 -5.9429 0.2252 19 6 7.0252 -6.4702 1.3869 20 1 6.8957 -5.9408 2.3193 21 6 7.7016 -7.6822 1.3652 22 7 7.8600 -8.3272 0.2288 23 14 8.3873 -8.3978 2.9486 24 1 8.0773 -7.4858 4.0789 25 1 7.7699 -9.7247 3.2003 26 1 9.8591 -8.5520 2.8256 27 6 2.1979 -1.2002 -0.0058 28 6 1.4672 -2.5181 -0.0129 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 5.9467 0.2589 -0.8829 33 1 4.0784 -1.2933 -2.2553 34 1 3.7710 -2.8770 -3.0106 35 1 6.4754 -1.4895 -2.7169 36 1 5.5751 -1.7542 -4.2302 37 1 7.3500 -3.4546 -3.9703 38 1 5.7420 -4.2129 -3.8845 39 1 7.4448 -3.4054 -1.4830 40 1 7.2508 -5.0650 -2.0974 41 1 4.8994 -4.7639 0.8233 42 1 6.4531 -3.9031 0.7075 43 1 6.6443 -6.4182 -0.6122 44 1 8.3323 -9.1742 0.2136 45 1 1.2868 -2.8389 1.0131 46 1 0.5148 -2.4026 -0.5303 47 1 2.0714 -3.2658 -0.5265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752829135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:55 Heat of formation + Delta-G solvation = -20.458733 kcal Electronic energy + Delta-G solvation = -30333.454675 eV Core-core repulsion = 26323.832445 eV Total energy + Delta-G solvation = -4009.622229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.82174 -41.39163 -38.99316 -38.60558 -36.74654 -36.02443 -34.37138 -33.82438 -33.30484 -31.48507 -29.78792 -29.04529 -27.94054 -26.30388 -25.25738 -24.70365 -23.81650 -22.74995 -22.01870 -20.58795 -20.14388 -19.35946 -19.03420 -18.28733 -17.56214 -16.98151 -16.68098 -16.29436 -15.89441 -15.78357 -15.55950 -15.33024 -15.09277 -15.00224 -14.60267 -14.49782 -14.44082 -14.15170 -14.10375 -13.91673 -13.59540 -13.57401 -13.32118 -13.15358 -12.91511 -12.90604 -12.76748 -12.32982 -12.22927 -12.16511 -12.06570 -11.87572 -11.67470 -11.51485 -11.15215 -11.02583 -10.90990 -10.54158 -10.31790 -9.76837 -8.98185 -7.98336 -5.25973 -0.72301 -0.45572 1.19932 1.43413 1.44149 1.54666 1.61099 2.03216 2.20976 2.53732 2.91250 3.03007 3.24141 3.34717 3.53749 3.66117 3.75383 3.81029 3.87906 4.00039 4.08099 4.10328 4.20291 4.31485 4.33252 4.50761 4.52461 4.55658 4.63545 4.72749 4.74088 4.78245 4.85278 4.95365 4.98566 5.00059 5.07033 5.15023 5.23626 5.24873 5.31210 5.43013 5.45155 5.54465 6.14336 6.25134 6.26387 6.88095 7.31527 7.41924 8.04368 8.32822 9.25026 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003418 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.933273 B = 8190.728244 C = 8932.059039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.069 3.931 3 N -0.228 5.228 4 N -0.278 5.278 5 C 0.280 3.720 6 O -0.479 6.479 7 C -0.150 4.150 8 C 0.566 3.434 9 O -0.547 6.547 10 N -0.587 5.587 11 C 0.103 3.897 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.120 4.120 15 C 0.151 3.849 16 H 0.083 0.917 17 C 0.175 3.825 18 N -0.742 5.742 19 C -0.243 4.243 20 H 0.059 0.941 21 C -0.068 4.068 22 N -0.964 5.964 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.288 1.288 27 C -0.024 4.024 28 C -0.125 4.125 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.422 0.578 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.009 0.991 43 H 0.375 0.625 44 H 0.253 0.747 45 H 0.092 0.908 46 H 0.128 0.872 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 17.643 -12.686 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.077 4.077 3 N -0.073 5.073 4 N -0.129 5.129 5 C 0.093 3.907 6 O -0.287 6.287 7 C -0.165 4.165 8 C 0.352 3.648 9 O -0.424 6.424 10 N -0.319 5.319 11 C -0.018 4.018 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.159 4.159 15 C 0.048 3.952 16 H 0.101 0.899 17 C 0.049 3.951 18 N -0.387 5.387 19 C -0.375 4.375 20 H 0.077 0.923 21 C -0.261 4.261 22 N -0.614 5.614 23 Si 0.799 3.201 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.215 1.215 27 C -0.036 4.036 28 C -0.181 4.181 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.284 0.716 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.208 0.792 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.146 0.854 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.364 19.020 -11.374 27.549 hybrid contribution 1.425 -2.232 0.583 2.712 sum -14.939 16.788 -10.792 24.929 Atomic orbital electron populations 1.20953 0.83370 1.05748 1.05836 1.23376 1.01242 0.87984 0.95088 1.72775 0.99749 1.25719 1.09010 1.72996 1.00326 1.26668 1.12862 1.20853 0.86375 0.88197 0.95248 1.84770 1.13017 1.95182 1.35759 1.21330 0.95666 0.94307 1.05212 1.18094 0.79420 0.83157 0.84096 1.90982 1.55510 1.62498 1.33440 1.48138 1.56318 1.21198 1.06292 1.22075 0.99094 0.97883 0.82735 1.21949 0.95640 0.97368 1.01689 1.21516 1.01942 0.96919 0.94638 1.21832 0.95619 1.01530 0.96910 1.21348 0.93958 0.83753 0.96119 0.89865 1.21084 0.94346 0.86001 0.93663 1.42652 1.67143 1.21676 1.07240 1.19490 1.27610 1.02112 0.88301 0.92296 1.25461 1.02273 0.98191 1.00133 1.69788 1.48567 1.17263 1.25819 0.85128 0.77659 0.77959 0.79353 1.20098 1.21321 1.21477 1.21444 0.90617 0.99342 0.92164 1.21114 1.02012 0.90210 1.04785 0.86952 0.87718 0.89219 0.71576 0.89864 0.88430 0.91630 0.87076 0.90379 0.90472 0.93355 0.92051 0.96292 0.97342 0.79178 0.93781 0.88980 0.85353 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.42 71.23 0.67 -0.09 16 2 C 0.07 1.19 6.86 42.61 0.29 1.48 16 3 N -0.23 -5.33 11.40 -47.73 -0.54 -5.88 16 4 N -0.28 -7.45 11.52 -169.57 -1.95 -9.40 16 5 C 0.28 7.32 7.53 85.13 0.64 7.96 16 6 O -0.48 -12.13 13.09 -87.43 -1.14 -13.28 16 7 C -0.15 -3.80 3.83 -19.75 -0.08 -3.87 16 8 C 0.57 17.65 5.41 86.78 0.47 18.12 16 9 O -0.55 -23.37 12.50 -3.88 -0.05 -23.42 16 10 N -0.59 -15.17 2.98 -798.31 -2.38 -17.55 16 11 C 0.10 1.59 6.31 86.35 0.55 2.13 16 12 C -0.13 -1.71 6.08 30.67 0.19 -1.53 16 13 C -0.11 -2.11 5.88 30.62 0.18 -1.93 16 14 C -0.12 -3.62 5.12 30.67 0.16 -3.46 16 15 C 0.15 4.97 3.04 44.97 0.14 5.11 16 16 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 17 C 0.18 8.10 4.10 86.38 0.35 8.45 16 18 N -0.74 -40.25 5.28 -343.47 -1.81 -42.06 16 19 C -0.24 -14.70 9.99 84.03 0.84 -13.86 16 20 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.96 -59.58 13.06 21.65 0.28 -59.29 16 23 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 27 C -0.02 -0.46 5.96 -19.36 -0.12 -0.57 16 28 C -0.12 -1.76 8.92 71.23 0.64 -1.12 16 29 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.10 0.41 6.80 -2.39 -0.02 0.39 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.42 6.12 9.06 -74.05 -0.67 5.45 16 33 H 0.08 1.11 6.12 -2.39 -0.01 1.09 16 34 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.06 2.19 7.16 -2.39 -0.02 2.17 16 41 H 0.02 0.97 6.48 -2.39 -0.02 0.96 16 42 H 0.01 0.45 7.00 -2.38 -0.02 0.43 16 43 H 0.38 20.56 6.75 -92.71 -0.63 19.94 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.13 0.73 6.83 -2.39 -0.02 0.71 16 47 H 0.07 1.17 7.25 -2.39 -0.02 1.16 16 Total: -1.00 -84.05 375.66 -0.47 -84.52 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.28 Total: 22.79 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.38 Total: 13.22 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -6.41 Total: -134.18 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.19 Total: -36.70 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -84.05 -0.47 -84.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752829135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.056 kcal (2) G-P(sol) polarization free energy of solvation -84.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds