Wall clock time and date at job start Tue Mar 31 2020 19:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31884 * 119.93028 * 2 1 4 4 N 1.28283 * 122.62194 * 180.02562 * 3 2 1 5 5 C 1.32485 * 122.22107 * 359.94721 * 4 3 2 6 6 O 1.35445 * 120.25103 * 180.30015 * 5 4 3 7 7 C 1.40455 * 119.49195 * 0.02562 * 5 4 3 8 8 C 1.47823 * 121.17504 * 179.97438 * 7 5 4 9 9 O 1.21549 * 120.00170 * 90.00142 * 8 7 5 10 10 N 1.34778 * 119.99911 * 270.00107 * 8 7 5 11 11 C 1.46504 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47290 * 175.56474 * 11 10 8 13 13 N 1.46494 * 110.01778 * 55.24561 * 12 11 10 14 14 C 1.36932 * 120.00387 * 61.54517 * 13 12 11 15 15 H 1.08001 * 119.99590 * 354.37918 * 14 13 12 16 16 C 1.38812 * 120.00542 * 174.37237 * 14 13 12 17 17 N 1.31618 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00250 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47203 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47233 * 120.00113 * 18 16 14 21 21 H 1.48500 * 109.47394 * 239.99862 * 18 16 14 22 22 C 1.54269 * 110.02774 * 293.80419 * 12 11 10 23 23 C 1.54895 * 104.19303 * 217.10795 * 22 12 11 24 24 C 1.54883 * 102.74852 * 37.94090 * 23 22 12 25 25 C 1.53875 * 110.03031 * 176.63954 * 12 11 10 26 26 C 1.38481 * 119.93650 * 179.97438 * 2 1 3 27 27 C 1.50703 * 121.05672 * 359.97438 * 26 2 1 28 28 H 1.08996 * 109.47619 * 270.02652 * 1 2 3 29 29 H 1.09001 * 109.47160 * 30.02611 * 1 2 3 30 30 H 1.09006 * 109.47101 * 150.02588 * 1 2 3 31 31 H 0.96693 * 113.99952 * 269.72183 * 6 5 4 32 32 H 0.97000 * 120.00034 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.46389 * 295.56219 * 11 10 8 34 34 H 1.09000 * 109.46764 * 55.55823 * 11 10 8 35 35 H 0.97008 * 119.99816 * 241.54619 * 13 12 11 36 36 H 0.97003 * 120.00054 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.48745 * 335.78039 * 22 12 11 38 38 H 1.08999 * 110.48729 * 98.42956 * 22 12 11 39 39 H 1.08998 * 110.75229 * 279.62580 * 23 22 12 40 40 H 1.08999 * 110.75640 * 156.25646 * 23 22 12 41 41 H 1.08995 * 110.48754 * 203.37752 * 24 23 22 42 42 H 1.09007 * 110.48661 * 80.73522 * 24 23 22 43 43 H 1.09001 * 110.02891 * 238.56544 * 25 12 11 44 44 H 1.09003 * 110.03508 * 359.97438 * 25 12 11 45 45 H 1.08993 * 109.46911 * 270.02499 * 27 26 2 46 46 H 1.09004 * 109.46904 * 30.02545 * 27 26 2 47 47 H 1.08994 * 109.46905 * 150.02302 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1649 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2046 0.1168 0.0000 6 8 5.5546 0.2269 0.0056 7 6 3.5978 -1.1499 0.0006 8 6 4.4079 -2.3864 0.0006 9 8 4.7413 -2.8946 1.0532 10 7 4.7767 -2.9504 -1.1667 11 6 5.5791 -4.1762 -1.1667 12 6 5.7648 -4.6641 -2.6049 13 7 6.3469 -3.5987 -3.4247 14 6 7.5844 -3.0983 -3.1193 15 1 8.0922 -3.4234 -2.2233 16 6 8.1863 -2.1733 -3.9613 17 7 7.5672 -1.7768 -5.0531 18 14 9.8747 -1.4912 -3.5450 19 1 10.3521 -2.0931 -2.2741 20 1 10.8253 -1.8223 -4.6367 21 1 9.7892 -0.0165 -3.3934 22 6 4.4080 -5.1035 -3.1931 23 6 4.7536 -6.3357 -4.0658 24 6 5.8410 -7.0535 -3.2284 25 6 6.6759 -5.9040 -2.6273 26 6 2.1980 -1.2000 0.0005 27 6 1.4672 -2.5180 0.0017 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 5.9504 0.2566 -0.8761 32 1 4.5110 -2.5447 -2.0067 33 1 6.5538 -3.9723 -0.7235 34 1 5.0690 -4.9443 -0.5854 35 1 5.8556 -3.2477 -4.1840 36 1 7.9879 -1.1307 -5.6417 37 1 3.7188 -5.3820 -2.3959 38 1 3.9827 -4.3090 -3.8062 39 1 5.1520 -6.0254 -5.0317 40 1 3.8803 -6.9752 -4.1944 41 1 6.4614 -7.6820 -3.8672 42 1 5.3832 -7.6468 -2.4368 43 1 7.5507 -5.7132 -3.2489 44 1 6.9861 -6.1578 -1.6136 45 1 1.2911 -2.8348 1.0296 46 1 0.5127 -2.4046 -0.5123 47 1 2.0694 -3.2677 -0.5115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753667027.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:37 Heat of formation + Delta-G solvation = -17.919719 kcal Electronic energy + Delta-G solvation = -30127.952475 eV Core-core repulsion = 26118.440346 eV Total energy + Delta-G solvation = -4009.512129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51490 -39.49065 -38.24875 -37.69241 -35.02490 -34.27674 -33.44943 -32.70207 -30.74258 -28.96160 -28.40831 -28.22177 -27.80020 -25.23236 -23.85928 -23.10893 -22.72216 -20.71303 -20.10159 -18.94425 -18.84546 -18.13521 -17.46113 -17.00970 -16.31387 -15.82215 -15.24805 -15.02213 -14.85524 -14.51063 -14.42292 -14.13871 -13.75635 -13.62840 -13.33883 -13.30991 -13.10677 -13.06536 -12.84790 -12.67279 -12.25959 -12.10062 -12.03418 -11.66347 -11.27769 -11.14218 -10.92688 -10.78937 -10.69745 -10.61687 -10.45382 -10.32348 -10.11927 -9.95697 -9.93823 -9.76279 -9.52231 -9.38115 -9.04387 -8.71676 -7.14607 -5.92308 -3.22625 0.40359 0.62919 2.58355 3.06878 3.28843 3.34167 3.40355 3.43528 3.43942 3.95203 4.22829 4.38735 4.46934 4.61714 4.83035 4.98490 5.02559 5.05107 5.11160 5.12321 5.19156 5.31941 5.45772 5.49971 5.53394 5.55500 5.60871 5.64116 5.78726 5.84605 5.86007 5.99459 6.00345 6.03742 6.14003 6.20757 6.31075 6.44500 6.48798 6.62492 6.69680 6.77795 7.01178 7.34847 7.62371 7.72044 8.25859 8.32204 8.53661 9.38054 9.90806 10.26500 11.29223 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.004600 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.116348 B = 6085.877203 C = 7794.483714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.053 3.947 3 N -0.208 5.208 4 N -0.256 5.256 5 C 0.295 3.705 6 O -0.466 6.466 7 C -0.139 4.139 8 C 0.567 3.433 9 O -0.531 6.531 10 N -0.688 5.688 11 C 0.117 3.883 12 C 0.189 3.811 13 N -0.712 5.712 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.006 4.006 17 N -0.929 5.929 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.291 1.291 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.035 4.035 27 C -0.123 4.123 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.416 0.584 32 H 0.405 0.595 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.847 -4.655 5.241 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.092 4.092 3 N -0.053 5.053 4 N -0.108 5.108 5 C 0.109 3.891 6 O -0.273 6.273 7 C -0.154 4.154 8 C 0.349 3.651 9 O -0.408 6.408 10 N -0.337 5.337 11 C -0.009 4.009 12 C 0.096 3.904 13 N -0.354 5.354 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.203 4.203 17 N -0.577 5.577 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.218 1.218 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.170 4.170 26 C -0.047 4.047 27 C -0.180 4.180 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.278 0.722 32 H 0.240 0.760 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.384 -3.380 6.611 16.188 hybrid contribution 1.274 -0.650 -0.940 1.711 sum -13.110 -4.030 5.671 14.842 Atomic orbital electron populations 1.20721 0.86917 1.04324 1.03787 1.22711 0.99252 0.89370 0.97901 1.72817 1.00311 1.24341 1.07876 1.73047 0.99399 1.26497 1.11846 1.20873 0.86570 0.88100 0.93577 1.84709 1.12503 1.95073 1.35056 1.21459 0.94645 0.95870 1.03460 1.17607 0.79838 0.82753 0.84860 1.90803 1.55743 1.62920 1.31348 1.45791 1.52728 1.27610 1.07585 1.22081 0.94866 0.84555 0.99391 1.20454 0.91576 0.89305 0.89040 1.42567 1.19131 1.40221 1.33476 1.19148 0.93959 1.18745 1.04946 0.91098 1.24705 0.98331 1.00470 0.96774 1.69659 1.38320 1.35707 1.14023 0.86237 0.84513 0.78654 0.77527 1.20485 1.21882 1.21824 1.22587 0.96734 0.97921 0.98864 1.22410 0.97849 0.96335 0.99051 1.22308 0.97333 0.97561 0.98638 1.22656 0.99761 0.94164 1.00376 1.21048 0.91611 0.97817 0.94183 1.20987 1.00714 0.92161 1.04100 0.89681 0.89690 0.89833 0.72236 0.75964 0.91421 0.92319 0.78166 0.93494 0.91838 0.91606 0.91230 0.92560 0.92383 0.92560 0.89830 0.92960 0.89172 0.89384 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.81 36.00 0.35 -0.37 16 2 C 0.05 0.63 6.86 -82.48 -0.57 0.06 16 3 N -0.21 -3.12 11.40 33.56 0.38 -2.73 16 4 N -0.26 -4.31 11.52 30.73 0.35 -3.96 16 5 C 0.29 4.89 7.88 -16.44 -0.13 4.76 16 6 O -0.47 -7.79 13.09 -18.03 -0.24 -8.03 16 7 C -0.14 -2.13 5.69 -104.45 -0.59 -2.72 16 8 C 0.57 9.55 5.62 -12.34 -0.07 9.48 16 9 O -0.53 -10.73 17.10 5.32 0.09 -10.64 16 10 N -0.69 -10.88 5.22 -61.26 -0.32 -11.20 16 11 C 0.12 1.94 4.04 -4.04 -0.02 1.93 16 12 C 0.19 3.11 0.68 -130.70 -0.09 3.02 16 13 N -0.71 -14.72 4.53 -46.20 -0.21 -14.93 16 14 C -0.24 -5.71 8.52 -15.06 -0.13 -5.84 16 15 H 0.07 1.74 7.27 -52.49 -0.38 1.36 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 17 N -0.93 -25.40 13.07 55.49 0.73 -24.68 16 18 Si 0.90 21.15 29.55 -169.99 -5.02 16.13 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.12 -1.69 5.72 -25.07 -0.14 -1.83 16 23 C -0.12 -1.56 6.91 -24.74 -0.17 -1.73 16 24 C -0.12 -1.61 6.83 -25.08 -0.17 -1.78 16 25 C -0.13 -2.09 5.93 -25.61 -0.15 -2.24 16 26 C -0.04 -0.43 5.96 -103.84 -0.62 -1.05 16 27 C -0.12 -1.08 9.32 36.01 0.34 -0.75 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.42 6.05 -51.93 -0.31 0.11 16 31 H 0.42 5.69 9.06 45.56 0.41 6.10 16 32 H 0.40 6.27 7.98 -40.82 -0.33 5.94 16 33 H 0.07 1.31 7.46 -51.93 -0.39 0.92 16 34 H 0.06 0.91 8.04 -51.93 -0.42 0.50 16 35 H 0.38 8.59 7.45 -40.82 -0.30 8.29 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.06 0.77 7.79 -51.93 -0.40 0.37 16 38 H 0.07 0.92 7.72 -51.93 -0.40 0.51 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.59 7.36 -51.93 -0.38 1.21 16 44 H 0.05 0.80 7.67 -51.93 -0.40 0.40 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.52 6.07 -51.93 -0.32 0.20 16 47 H 0.08 0.76 7.24 -51.93 -0.38 0.39 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -31.26 384.53 -6.79 -38.04 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -6.09 Total: 15.53 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.26 Total: 0.67 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.93 Total: -57.50 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.14 Total: -18.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.26 -6.79 -38.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753667027.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.123 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds