Wall clock time and date at job start Tue Mar 31 2020 18:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31121 * 126.55413 * 2 1 4 4 C 1.34494 * 105.61711 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.28850 * 179.97438 * 4 3 2 6 6 C 1.53140 * 109.42417 * 29.99389 * 5 4 3 7 7 C 1.53703 * 108.88507 * 66.06163 * 6 5 4 8 8 H 1.09003 * 112.12510 * 187.71990 * 7 6 5 9 9 C 1.54605 * 107.81339 * 312.37656 * 7 6 5 10 10 C 1.54291 * 104.84037 * 88.56688 * 9 7 6 11 11 C 1.54606 * 104.84282 * 359.97438 * 10 9 7 12 12 H 1.08998 * 112.21848 * 146.86253 * 11 10 9 13 13 C 1.53133 * 109.42587 * 150.25403 * 5 4 3 14 14 N 1.48717 * 104.22331 * 25.18230 * 11 10 9 15 15 C 1.46908 * 111.00005 * 77.50984 * 14 11 10 16 16 C 1.50696 * 109.46805 * 75.53641 * 15 14 11 17 17 O 1.21275 * 120.00178 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99891 * 180.02562 * 16 15 14 19 19 C 1.46491 * 120.00238 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47159 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00040 * 0.02562 * 20 19 18 22 22 C 1.37882 * 120.00111 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99670 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00224 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47536 * 89.99427 * 24 22 20 26 26 H 1.48505 * 109.47175 * 209.99980 * 24 22 20 27 27 H 1.48500 * 109.46889 * 329.99495 * 24 22 20 28 28 N 1.29948 * 107.42603 * 0.24171 * 4 3 2 29 29 O 1.21300 * 110.24802 * 359.57900 * 28 4 3 30 30 H 1.08997 * 109.46731 * 90.00082 * 1 2 3 31 31 H 1.09004 * 109.47138 * 210.00211 * 1 2 3 32 32 H 1.08995 * 109.46525 * 329.99534 * 1 2 3 33 33 H 1.08997 * 109.43053 * 270.09702 * 5 4 3 34 34 H 1.09004 * 109.56612 * 185.88198 * 6 5 4 35 35 H 1.08996 * 109.56792 * 306.11518 * 6 5 4 36 36 H 1.09003 * 110.36742 * 207.40539 * 9 7 6 37 37 H 1.08996 * 110.36384 * 329.72544 * 9 7 6 38 38 H 1.08996 * 110.36282 * 241.15128 * 10 9 7 39 39 H 1.09002 * 110.45515 * 118.88573 * 10 9 7 40 40 H 1.09004 * 109.57000 * 53.76167 * 13 5 4 41 41 H 1.09001 * 109.56518 * 174.11788 * 13 5 4 42 42 H 1.09000 * 109.46996 * 195.53544 * 15 14 11 43 43 H 1.08997 * 109.46772 * 315.53043 * 15 14 11 44 44 H 0.96999 * 119.99484 * 359.97438 * 18 16 15 45 45 H 1.09000 * 109.47447 * 299.99853 * 19 18 16 46 46 H 1.09002 * 109.46719 * 59.99942 * 19 18 16 47 47 H 0.96998 * 119.99620 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5441 0.5727 0.0006 5 6 4.8113 1.3885 0.0003 6 6 4.5622 2.7164 0.7213 7 6 4.2809 2.4316 2.2053 8 1 3.9639 3.3258 2.7420 9 6 3.2403 1.2905 2.2789 10 6 4.0756 -0.0068 2.2767 11 6 5.5449 0.4684 2.2013 12 1 6.2207 -0.1944 2.7418 13 6 5.9181 0.6104 0.7176 14 7 5.5164 1.8376 2.7812 15 6 5.4415 1.7868 4.2475 16 6 6.7903 1.4138 4.8066 17 8 7.7220 1.2098 4.0575 18 7 6.9610 1.3059 6.1392 19 6 8.2719 0.9427 6.6828 20 6 8.1952 0.8908 8.1869 21 1 7.2630 1.1064 8.6878 22 6 9.3151 0.5682 8.9237 23 7 10.4504 0.3062 8.3137 24 14 9.2199 0.5031 10.7880 25 1 8.8469 -0.8687 11.2172 26 1 10.5413 0.8600 11.3640 27 1 8.1955 1.4666 11.2652 28 7 3.4645 -0.7243 -0.0043 29 8 2.3030 -1.0737 0.0006 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3632 0.8899 0.5139 33 1 5.1154 1.5856 -1.0277 34 1 5.4439 3.3512 0.6321 35 1 3.7041 3.2188 0.2750 36 1 2.6590 1.3658 3.1979 37 1 2.5831 1.3199 1.4098 38 1 3.8289 -0.6153 1.4067 39 1 3.9055 -0.5709 3.1937 40 1 6.0181 -0.3785 0.2700 41 1 6.8607 1.1505 0.6282 42 1 5.1471 2.7640 4.6302 43 1 4.7048 1.0419 4.5481 44 1 6.2157 1.4687 6.7383 45 1 8.5661 -0.0344 6.2998 46 1 9.0088 1.6877 6.3824 47 1 11.2382 0.0788 8.8320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879680425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:54 Heat of formation + Delta-G solvation = 127.629805 kcal Electronic energy + Delta-G solvation = -30156.970908 eV Core-core repulsion = 26153.770280 eV Total energy + Delta-G solvation = -4003.200628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.52868 -41.24385 -38.52427 -36.46015 -34.73543 -34.06512 -32.87039 -32.27305 -31.51137 -30.92384 -29.23369 -27.99828 -26.36165 -24.73052 -24.27597 -23.50786 -22.42837 -21.53264 -20.28169 -19.66424 -19.55750 -18.58739 -17.51551 -17.04079 -16.56593 -15.76246 -15.45964 -15.08535 -14.96755 -14.71296 -14.25867 -14.20766 -14.11535 -13.87229 -13.63355 -13.39326 -13.16234 -13.06013 -12.84367 -12.66465 -12.51336 -12.28270 -12.01992 -11.82970 -11.72026 -11.56029 -11.36784 -11.09243 -10.94948 -10.88200 -10.83253 -10.59876 -10.39458 -10.29036 -9.65602 -9.37119 -9.00857 -8.96448 -8.70573 -8.33088 -7.80859 -6.14687 -4.21405 0.79946 1.70321 2.55587 3.24906 3.25885 3.30820 3.33399 3.47476 3.67429 3.80138 4.27099 4.40683 4.50648 4.54872 4.66124 4.80287 4.81256 4.87761 4.97708 5.07290 5.13598 5.19045 5.21182 5.24028 5.34389 5.40031 5.43685 5.45889 5.56550 5.61911 5.66500 5.75872 5.78868 5.95043 5.98588 6.01506 6.09316 6.19596 6.24546 6.30957 6.92994 7.06910 7.36602 7.50850 7.55958 7.71208 7.86744 8.00050 8.69052 8.82838 9.19393 9.45538 10.95573 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025061 B = 0.002467 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.009831 B =11347.300470 C =11653.829192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.146 3.854 3 N -0.457 5.457 4 C 0.200 3.800 5 C -0.001 4.001 6 C -0.096 4.096 7 C 0.068 3.932 8 H 0.093 0.907 9 C -0.224 4.224 10 C -0.224 4.224 11 C 0.078 3.922 12 H 0.100 0.900 13 C -0.100 4.100 14 N -0.479 5.479 15 C 0.025 3.975 16 C 0.500 3.500 17 O -0.538 6.538 18 N -0.717 5.717 19 C 0.252 3.748 20 C -0.542 4.542 21 H 0.062 0.938 22 C 0.063 3.937 23 N -0.885 5.885 24 Si 0.904 3.096 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 N -0.355 5.355 29 O 0.060 5.940 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.058 0.942 44 H 0.388 0.612 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.873 1.676 -19.173 29.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 N -0.194 5.194 4 C -0.068 4.068 5 C -0.021 4.021 6 C -0.134 4.134 7 C -0.041 4.041 8 H 0.111 0.889 9 C -0.262 4.262 10 C -0.262 4.262 11 C -0.031 4.031 12 H 0.118 0.882 13 C -0.138 4.138 14 N -0.201 5.201 15 C -0.107 4.107 16 C 0.283 3.717 17 O -0.415 6.415 18 N -0.367 5.367 19 C 0.131 3.869 20 C -0.581 4.581 21 H 0.080 0.920 22 C -0.141 4.141 23 N -0.523 5.523 24 Si 0.731 3.269 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 N -0.069 5.069 29 O 0.006 5.994 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.220 0.780 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.704 1.697 -19.820 28.712 hybrid contribution -1.179 -0.552 2.097 2.468 sum -21.883 1.145 -17.723 28.183 Atomic orbital electron populations 1.20348 0.80396 1.05796 1.05216 1.28537 0.98757 0.80601 0.99044 1.71240 1.00520 1.29074 1.18576 1.25509 0.95236 0.88172 0.97916 1.19832 0.86872 0.93905 1.01491 1.21663 1.02989 0.94990 0.93751 1.22995 0.88424 0.97113 0.95573 0.88855 1.24806 1.00797 0.95063 1.05514 1.24896 0.97449 0.98630 1.05201 1.22910 0.94816 0.90054 0.95308 0.88160 1.21672 0.97819 1.00315 0.94027 1.65218 1.34257 1.16647 1.03971 1.22101 0.96170 1.02394 0.90029 1.20281 0.89705 0.78557 0.83116 1.90644 1.42509 1.50038 1.58297 1.46451 1.15471 1.69164 1.05602 1.19055 0.78717 0.96096 0.92988 1.21234 0.96776 1.49246 0.90825 0.91989 1.24959 0.95061 0.94830 0.99224 1.69980 1.00647 1.45726 1.35932 0.86418 0.77548 0.78402 0.84557 1.20492 1.20977 1.19770 1.73995 0.97627 1.15794 1.19484 1.85291 1.11163 1.35336 1.67598 0.88185 0.88599 0.87880 0.88111 0.89480 0.90331 0.92441 0.84476 0.86063 0.92583 0.90870 0.88914 0.88688 0.92407 0.77980 0.95745 0.95589 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.17 10.51 36.01 0.38 0.21 16 2 C 0.15 1.14 8.07 -13.06 -0.11 1.03 16 3 N -0.46 -4.44 8.23 -9.86 -0.08 -4.52 16 4 C 0.20 2.20 4.05 -156.37 -0.63 1.57 16 5 C 0.00 -0.01 3.14 -91.63 -0.29 -0.30 16 6 C -0.10 -1.00 5.27 -26.29 -0.14 -1.14 16 7 C 0.07 0.82 3.67 -65.51 -0.24 0.58 16 8 H 0.09 1.04 7.99 -51.93 -0.41 0.63 16 9 C -0.22 -2.67 5.32 -25.21 -0.13 -2.81 16 10 C -0.22 -3.04 5.16 -25.21 -0.13 -3.17 16 11 C 0.08 1.18 3.24 -65.52 -0.21 0.97 16 12 H 0.10 1.83 7.04 -51.93 -0.37 1.46 16 13 C -0.10 -1.29 5.27 -26.32 -0.14 -1.42 16 14 N -0.48 -7.26 4.59 -214.43 -0.98 -8.24 16 15 C 0.02 0.39 5.14 -4.97 -0.03 0.37 16 16 C 0.50 10.47 7.49 -10.98 -0.08 10.38 16 17 O -0.54 -13.37 15.38 5.56 0.09 -13.28 16 18 N -0.72 -15.73 5.55 -61.48 -0.34 -16.07 16 19 C 0.25 6.89 5.43 -5.20 -0.03 6.86 16 20 C -0.54 -15.06 9.28 -34.44 -0.32 -15.38 16 21 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 24 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 N -0.36 -4.16 8.55 30.90 0.26 -3.89 16 29 O 0.06 0.60 11.14 18.08 0.20 0.80 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.31 16 31 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 32 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.14 1.53 2.19 -114.74 -0.25 1.28 16 38 H 0.12 1.63 2.45 -115.19 -0.28 1.35 16 39 H 0.06 0.82 7.89 -51.93 -0.41 0.41 16 40 H 0.07 0.92 7.83 -51.93 -0.41 0.51 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.31 7.97 -51.93 -0.41 0.90 16 43 H 0.06 0.86 6.89 -51.93 -0.36 0.50 16 44 H 0.39 7.33 8.32 -40.82 -0.34 6.99 16 45 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -34.59 359.67 -8.90 -43.49 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.99 Total: 6.51 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.19 Total: -0.57 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.41 Total: -58.55 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.29 Total: -12.48 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.59 -8.90 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879680425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.118 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds