Wall clock time and date at job start Tue Mar 31 2020 18:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30273 * 126.28603 * 2 1 4 4 N 1.28672 * 109.38011 * 179.73021 * 3 2 1 5 5 C 1.30274 * 109.37813 * 0.44527 * 4 3 2 6 6 C 1.50701 * 126.27738 * 179.82454 * 5 4 3 7 7 C 1.50703 * 109.47064 * 89.69151 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.02772 * 33.94925 * 10 9 7 12 12 C 1.52530 * 109.03963 * 274.99571 * 10 9 7 13 13 C 1.53814 * 111.70096 * 185.39623 * 12 10 9 14 14 C 1.51621 * 107.02002 * 57.53680 * 13 12 10 15 15 H 1.08995 * 110.50130 * 56.32378 * 14 13 12 16 16 C 1.53054 * 116.67727 * 183.73083 * 14 13 12 17 17 N 1.48668 * 103.44583 * 155.88877 * 16 14 13 18 18 C 1.36930 * 125.78748 * 155.65010 * 17 16 14 19 19 H 1.08002 * 120.00284 * 179.97438 * 18 17 16 20 20 C 1.38819 * 120.00035 * 359.97438 * 18 17 16 21 21 N 1.31619 * 119.99729 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00204 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47340 * 89.99388 * 22 20 18 24 24 H 1.48494 * 109.47031 * 209.99571 * 22 20 18 25 25 H 1.48503 * 109.46914 * 329.99663 * 22 20 18 26 26 C 1.48247 * 108.42914 * 335.62035 * 17 16 14 27 27 C 1.52330 * 105.86574 * 356.81627 * 26 17 16 28 28 H 1.08999 * 109.88822 * 272.32255 * 27 26 17 29 29 C 1.51446 * 117.44884 * 145.30290 * 27 26 17 30 30 O 1.34358 * 107.43581 * 359.56207 * 5 4 3 31 31 H 1.09004 * 109.46833 * 269.99882 * 1 2 3 32 32 H 1.08997 * 109.46451 * 29.99659 * 1 2 3 33 33 H 1.08996 * 109.47261 * 150.00228 * 1 2 3 34 34 H 1.09002 * 109.47060 * 209.69114 * 6 5 4 35 35 H 1.09001 * 109.47380 * 329.69202 * 6 5 4 36 36 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 37 37 H 1.08994 * 109.03525 * 305.97014 * 12 10 9 38 38 H 1.08999 * 109.02982 * 64.90126 * 12 10 9 39 39 H 1.09000 * 109.94160 * 176.91558 * 13 12 10 40 40 H 1.09002 * 109.94330 * 298.15641 * 13 12 10 41 41 H 1.09000 * 110.62862 * 274.37341 * 16 14 13 42 42 H 1.09000 * 110.63314 * 37.40349 * 16 14 13 43 43 H 0.97000 * 120.00011 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.17182 * 115.91301 * 26 17 16 45 45 H 1.08994 * 110.17291 * 237.64231 * 26 17 16 46 46 H 1.09008 * 109.93673 * 61.85320 * 29 27 26 47 47 H 1.08999 * 109.93850 * 300.62649 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6759 0.0057 5 6 3.5654 -0.6256 0.0000 6 6 4.8176 -1.4640 0.0000 7 6 5.2350 -1.7436 1.4208 8 8 4.5804 -1.3047 2.3426 9 7 6.3364 -2.4803 1.6671 10 6 6.7418 -2.7525 3.0483 11 1 5.8503 -2.8490 3.6679 12 6 7.5797 -1.5853 3.5601 13 6 8.1504 -1.8659 4.9606 14 6 8.9679 -3.1388 4.8598 15 1 9.7375 -3.0387 4.0945 16 6 9.5705 -3.6734 6.1613 17 7 9.7546 -5.1229 5.8872 18 6 10.6542 -5.9474 6.5085 19 1 10.7085 -6.9909 6.2354 20 6 11.4963 -5.4420 7.4896 21 7 11.4304 -4.1702 7.8221 22 14 12.7230 -6.5668 8.3377 23 1 14.0032 -6.5600 7.5854 24 1 12.9601 -6.0860 9.7225 25 1 12.1807 -7.9487 8.3795 26 6 8.7987 -5.5247 4.8277 27 6 7.9694 -4.2838 4.5227 28 1 7.1113 -4.2374 5.1933 29 6 7.5258 -4.0755 3.0898 30 8 2.3021 -1.0831 0.0000 31 1 -0.3633 0.0000 1.0277 32 1 -0.3632 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.6244 -2.4057 -0.5139 35 1 5.6147 -0.9266 -0.5138 36 1 6.8601 -2.8310 0.9297 37 1 8.4039 -1.4093 2.8691 38 1 6.9560 -0.6924 3.6039 39 1 8.7871 -1.0390 5.2751 40 1 7.3369 -2.0018 5.6733 41 1 10.5292 -3.1964 6.3650 42 1 8.8819 -3.5244 6.9930 43 1 12.0191 -3.8169 8.5074 44 1 9.3383 -5.8445 3.9362 45 1 8.1562 -6.3287 5.1863 46 1 6.8832 -4.8984 2.7762 47 1 8.3961 -4.0126 2.4366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979728427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:58 Heat of formation + Delta-G solvation = 22.360973 kcal Electronic energy + Delta-G solvation = -28499.792157 eV Core-core repulsion = 24492.026730 eV Total energy + Delta-G solvation = -4007.765427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.52299 -40.37662 -38.94642 -36.45442 -35.82040 -34.01280 -33.62630 -31.95260 -31.46436 -30.47960 -28.79502 -27.57749 -26.17652 -24.99700 -23.41018 -22.84488 -22.06432 -21.28754 -20.56508 -19.76579 -19.41654 -18.13290 -17.53060 -17.00728 -16.72040 -16.35640 -15.83010 -14.97529 -14.93210 -14.85047 -14.49688 -14.31390 -14.03641 -13.80265 -13.60999 -13.39067 -13.24320 -12.90623 -12.66300 -12.50113 -12.23477 -12.12783 -12.06571 -11.91195 -11.66261 -11.34746 -11.26757 -10.95305 -10.86067 -10.67502 -10.51801 -10.39675 -10.05513 -9.92129 -9.91028 -9.74147 -9.61278 -9.32114 -9.06676 -8.64287 -6.81587 -5.63030 -3.04041 0.79202 1.82722 2.06974 2.26040 2.88220 3.40646 3.40933 3.45550 3.47757 3.96984 4.27113 4.37367 4.49289 4.59178 4.74307 4.80790 4.84646 4.87583 4.99447 5.14126 5.14512 5.21522 5.31835 5.36243 5.41579 5.50352 5.61147 5.64429 5.65987 5.76885 6.01539 6.12565 6.13089 6.22671 6.26083 6.37024 6.40483 6.56531 6.63188 6.67829 6.85517 7.03672 7.18753 7.56282 7.63358 7.87831 7.87907 7.99818 8.35313 9.22136 9.83424 10.50239 11.41376 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.040252 B = 0.001913 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.454603 B =14633.165707 C =14825.457794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.164 3.836 3 N -0.288 5.288 4 N -0.272 5.272 5 C 0.183 3.817 6 C -0.047 4.047 7 C 0.517 3.483 8 O -0.528 6.528 9 N -0.719 5.719 10 C 0.149 3.851 11 H 0.086 0.914 12 C -0.125 4.125 13 C -0.099 4.099 14 C -0.116 4.116 15 H 0.070 0.930 16 C 0.162 3.838 17 N -0.608 5.608 18 C -0.220 4.220 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.145 3.855 27 C -0.104 4.104 28 H 0.070 0.930 29 C -0.105 4.105 30 O -0.221 6.221 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.402 0.598 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.065 0.935 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 5.346 -19.925 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 N -0.136 5.136 4 N -0.119 5.119 5 C -0.029 4.029 6 C -0.089 4.089 7 C 0.301 3.699 8 O -0.404 6.404 9 N -0.370 5.370 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.163 4.163 13 C -0.137 4.137 14 C -0.135 4.135 15 H 0.088 0.912 16 C 0.038 3.962 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.020 3.980 27 C -0.124 4.124 28 H 0.089 0.911 29 C -0.143 4.143 30 O -0.100 6.100 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.062 0.938 44 H 0.040 0.960 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.669 6.891 -19.071 26.896 hybrid contribution 0.507 -1.982 0.139 2.050 sum -17.162 4.909 -18.932 26.021 Atomic orbital electron populations 1.20374 0.80094 1.05656 1.05467 1.28011 0.97847 0.79539 0.99232 1.74396 0.95972 1.25587 1.17646 1.74365 1.12349 1.08909 1.16234 1.26830 0.84694 0.91299 1.00042 1.20124 0.90229 1.00682 0.97817 1.20005 0.81175 0.78831 0.89932 1.90791 1.53536 1.50222 1.45820 1.46069 1.27310 1.53689 1.09920 1.21176 0.98374 0.94871 0.81033 0.89588 1.21901 0.99101 0.97503 0.97844 1.21257 0.99106 0.98253 0.95134 1.22389 0.96286 0.93029 1.01804 0.91201 1.21652 1.00763 0.83856 0.89916 1.45129 1.39927 1.06191 1.42210 1.19083 1.10079 0.91509 1.14223 0.90576 1.24780 1.00146 0.96458 0.99458 1.69815 1.41158 1.11808 1.34317 0.86088 0.81213 0.79495 0.78796 1.21664 1.21693 1.20810 1.20943 0.91161 0.93781 0.92156 1.21702 0.98418 0.97728 0.94505 0.91130 1.21532 0.99557 0.95048 0.98203 1.84741 1.17372 1.38354 1.69546 0.88132 0.87461 0.88851 0.85340 0.84011 0.76359 0.92018 0.92023 0.91529 0.91901 0.87802 0.96911 0.93794 0.96030 0.95832 0.91632 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.12 16 2 C 0.16 1.64 8.48 -12.94 -0.11 1.53 16 3 N -0.29 -3.77 12.22 32.55 0.40 -3.38 16 4 N -0.27 -3.71 12.22 32.55 0.40 -3.32 16 5 C 0.18 2.03 6.97 -12.94 -0.09 1.94 16 6 C -0.05 -0.32 6.33 -29.03 -0.18 -0.51 16 7 C 0.52 5.46 7.78 -10.98 -0.09 5.37 16 8 O -0.53 -8.29 15.67 5.56 0.09 -8.20 16 9 N -0.72 -6.38 5.03 -53.62 -0.27 -6.65 16 10 C 0.15 1.78 2.45 -67.74 -0.17 1.61 16 11 H 0.09 1.21 7.52 -51.93 -0.39 0.82 16 12 C -0.12 -1.64 5.38 -26.55 -0.14 -1.78 16 13 C -0.10 -1.53 5.71 -27.01 -0.15 -1.68 16 14 C -0.12 -2.09 2.47 -89.89 -0.22 -2.31 16 15 H 0.07 1.28 8.06 -51.93 -0.42 0.87 16 16 C 0.16 3.89 5.53 -2.82 -0.02 3.87 16 17 N -0.61 -15.50 3.45 -170.41 -0.59 -16.09 16 18 C -0.22 -6.15 10.30 -15.06 -0.16 -6.31 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -26.96 10.11 55.49 0.56 -26.40 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.15 2.95 6.98 -3.42 -0.02 2.92 16 27 C -0.10 -1.72 2.30 -90.35 -0.21 -1.93 16 28 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 29 C -0.10 -1.28 5.17 -27.08 -0.14 -1.42 16 30 O -0.22 -2.38 10.87 5.41 0.06 -2.33 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.40 2.16 8.61 -40.82 -0.35 1.81 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 41 H 0.10 2.82 5.93 -51.93 -0.31 2.51 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 47 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -37.09 380.16 -7.39 -44.48 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.33 Total: -1.93 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.41 Total: 0.97 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.50 Total: -55.82 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.15 Total: -10.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.09 -7.39 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979728427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.843 kcal (2) G-P(sol) polarization free energy of solvation -37.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds