Wall clock time and date at job start Tue Mar 31 2020 17:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35282 * 116.99684 * 2 1 4 4 N 1.32775 * 120.61557 * 0.25798 * 3 2 1 5 5 C 1.31730 * 120.87005 * 180.26941 * 4 3 2 6 6 C 1.50701 * 118.89998 * 179.75110 * 5 4 3 7 7 N 1.31933 * 122.19556 * 359.72302 * 5 4 3 8 8 C 1.32193 * 121.14566 * 0.02562 * 7 5 4 9 9 C 1.39809 * 118.97381 * 359.97438 * 8 7 5 10 10 C 1.47534 * 120.97684 * 179.97438 * 9 8 7 11 11 O 1.21587 * 120.00130 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99861 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99871 * 179.97438 * 12 10 9 14 14 H 1.09007 * 109.49498 * 325.06317 * 13 12 10 15 15 C 1.53038 * 109.52325 * 85.14181 * 13 12 10 16 16 C 1.53045 * 109.53834 * 181.33175 * 15 13 12 17 17 C 1.53617 * 109.24062 * 298.51258 * 16 15 13 18 18 N 1.46931 * 108.54664 * 54.85723 * 17 16 15 19 19 C 1.36930 * 120.63187 * 126.36688 * 18 17 16 20 20 H 1.08011 * 119.99618 * 209.41001 * 19 18 17 21 21 C 1.38803 * 120.00251 * 29.40756 * 19 18 17 22 22 N 1.31616 * 120.00099 * 15.71459 * 21 19 18 23 23 Si 1.86802 * 120.00243 * 195.70732 * 21 19 18 24 24 H 1.48508 * 109.47187 * 265.66239 * 23 21 19 25 25 H 1.48501 * 109.46848 * 25.65731 * 23 21 19 26 26 H 1.48497 * 109.47530 * 145.66049 * 23 21 19 27 27 C 1.46927 * 118.73296 * 306.09312 * 18 17 16 28 28 H 1.09003 * 109.58537 * 294.07023 * 27 18 17 29 29 C 1.53001 * 109.58581 * 173.78941 * 27 18 17 30 30 H 1.09010 * 109.47082 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47452 * 299.99944 * 1 2 3 32 32 H 1.09000 * 109.47235 * 60.00790 * 1 2 3 33 33 H 1.08992 * 109.46724 * 269.97657 * 6 5 4 34 34 H 1.08997 * 109.46738 * 29.97773 * 6 5 4 35 35 H 1.09001 * 109.46906 * 149.97266 * 6 5 4 36 36 H 1.07994 * 120.51315 * 180.02562 * 8 7 5 37 37 H 0.96996 * 119.99955 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.46549 * 301.35031 * 15 13 12 39 39 H 1.09001 * 109.46369 * 61.32939 * 15 13 12 40 40 H 1.09004 * 109.49307 * 58.58556 * 16 15 13 41 41 H 1.08996 * 109.49781 * 178.65041 * 16 15 13 42 42 H 1.08996 * 109.74215 * 295.11201 * 17 16 15 43 43 H 1.09003 * 109.66631 * 174.54789 * 17 16 15 44 44 H 0.96999 * 120.00087 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.47352 * 59.99733 * 29 27 18 46 46 H 1.09001 * 109.47363 * 180.02562 * 29 27 18 47 47 H 1.09003 * 109.46872 * 300.00083 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2054 0.0000 4 7 1.3319 2.3266 0.0051 5 6 1.9246 3.5030 -0.0001 6 6 1.0741 4.7471 0.0003 7 7 3.2379 3.6284 -0.0053 8 6 4.0261 2.5671 -0.0059 9 6 3.4480 1.2942 -0.0004 10 6 4.2857 0.0797 -0.0013 11 8 3.7641 -1.0186 0.0030 12 7 5.6291 0.1878 -0.0071 13 6 6.4610 -1.0182 -0.0075 14 1 5.9765 -1.7945 0.5849 15 6 6.6450 -1.5121 -1.4442 16 6 7.4862 -2.7906 -1.4422 17 6 8.8724 -2.4835 -0.8556 18 7 8.6946 -1.8765 0.4706 19 6 9.3262 -2.3991 1.5674 20 1 8.8775 -2.3037 2.5453 21 6 10.5428 -3.0513 1.4226 22 7 11.2390 -2.9074 0.3150 23 14 11.1923 -4.1334 2.7999 24 1 12.1063 -3.3419 3.6621 25 1 10.0555 -4.6352 3.6130 26 1 11.9313 -5.2833 2.2195 27 6 7.8311 -0.6944 0.5963 28 1 8.2779 0.1431 0.0606 29 6 7.6708 -0.3312 2.0739 30 1 -0.3634 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 0.8652 5.0447 -1.0272 34 1 0.1363 4.5458 0.5181 35 1 1.6057 5.5504 0.5105 36 1 5.1000 2.6816 -0.0097 37 1 6.0452 1.0640 -0.0109 38 1 5.6697 -1.7199 -1.8846 39 1 7.1519 -0.7451 -2.0298 40 1 6.9921 -3.5501 -0.8363 41 1 7.5967 -3.1550 -2.4634 42 1 9.4024 -1.7890 -1.5073 43 1 9.4435 -3.4071 -0.7610 44 1 12.0890 -3.3635 0.2136 45 1 8.6489 -0.1126 2.5026 46 1 7.0296 0.5456 2.1651 47 1 7.2194 -1.1680 2.6069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993392580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:23 Heat of formation + Delta-G solvation = -1.349317 kcal Electronic energy + Delta-G solvation = -29487.982267 eV Core-core repulsion = 25479.188684 eV Total energy + Delta-G solvation = -4008.793583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67449 -39.52121 -38.82987 -37.54425 -34.43426 -33.86080 -33.01991 -32.47643 -31.63513 -29.74388 -28.87655 -27.64571 -26.14773 -25.01563 -24.25728 -23.74645 -22.16717 -20.71078 -20.46050 -19.53175 -18.83596 -18.10960 -17.46583 -16.62033 -16.36144 -15.59434 -15.24441 -15.01816 -14.91016 -14.70860 -14.57972 -14.30853 -13.76083 -13.73007 -13.51125 -13.27115 -12.96779 -12.81773 -12.72027 -12.53520 -12.32445 -11.91069 -11.71381 -11.64311 -11.54026 -11.11536 -10.93124 -10.74139 -10.60985 -10.56190 -10.29723 -10.13337 -10.04223 -9.94547 -9.76152 -9.59204 -9.37667 -9.30856 -8.67473 -8.45518 -6.67513 -5.80165 -3.24399 0.21846 0.81857 2.58482 2.85393 3.19961 3.36897 3.44733 3.47370 3.51102 3.58200 3.69000 4.39886 4.48503 4.55576 4.84104 4.93862 4.97884 5.00470 5.13873 5.18188 5.29498 5.32439 5.39398 5.47458 5.52086 5.60892 5.79388 5.85669 5.96836 6.07646 6.21251 6.33145 6.40298 6.45627 6.53186 6.62133 6.70858 6.75142 6.81151 6.86708 6.98456 7.06636 7.39628 7.63737 7.66557 7.71982 7.81527 8.36888 8.45096 9.19581 9.82270 10.38735 11.28513 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.002706 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.724097 B =10345.864042 C =10669.755070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.261 6.261 3 C 0.413 3.587 4 N -0.580 5.580 5 C 0.371 3.629 6 C -0.088 4.088 7 N -0.544 5.544 8 C 0.213 3.787 9 C -0.264 4.264 10 C 0.566 3.434 11 O -0.517 6.517 12 N -0.714 5.714 13 C 0.133 3.867 14 H 0.088 0.912 15 C -0.117 4.117 16 C -0.140 4.140 17 C 0.170 3.830 18 N -0.582 5.582 19 C -0.252 4.252 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.290 1.290 27 C 0.167 3.833 28 H 0.028 0.972 29 C -0.137 4.137 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.179 0.821 37 H 0.392 0.608 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.088 0.912 44 H 0.253 0.747 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.157 13.272 -2.534 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.162 6.162 3 C 0.225 3.775 4 N -0.311 5.311 5 C 0.105 3.895 6 C -0.146 4.146 7 N -0.263 5.263 8 C 0.049 3.951 9 C -0.273 4.273 10 C 0.351 3.649 11 O -0.393 6.393 12 N -0.365 5.365 13 C 0.028 3.972 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.180 4.180 17 C 0.044 3.956 18 N -0.305 5.305 19 C -0.381 4.381 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.216 1.216 27 C 0.059 3.941 28 H 0.046 0.954 29 C -0.195 4.195 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.196 0.804 37 H 0.227 0.773 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.842 12.806 -2.544 23.752 hybrid contribution 0.905 -0.819 0.542 1.335 sum -18.936 11.987 -2.002 22.501 Atomic orbital electron populations 1.23065 0.76940 1.03829 1.02523 1.86557 1.22820 1.22414 1.84377 1.20127 0.88377 0.85185 0.83824 1.68066 1.41143 0.98533 1.23404 1.23186 0.88255 0.92182 0.85842 1.20662 0.98351 0.91350 1.04277 1.68298 1.05394 1.33576 1.19031 1.23421 1.00757 0.85673 0.85299 1.21058 0.92459 0.97172 1.16608 1.17492 0.82238 0.87679 0.77514 1.90835 1.72805 1.26862 1.48766 1.46017 1.05222 1.10555 1.74728 1.21826 0.92227 0.85923 0.97255 0.89392 1.21767 0.99323 0.98415 0.96065 1.22255 0.99550 0.96311 0.99883 1.20927 0.90989 0.98922 0.84726 1.44047 1.52725 1.28211 1.05508 1.19157 0.99517 1.31201 0.88255 0.91217 1.25072 0.95557 1.01543 0.97251 1.70024 1.13499 1.44343 1.26742 0.86311 0.78690 0.80343 0.81611 1.21479 1.20376 1.21581 1.20565 0.88431 0.90685 0.94377 0.95450 1.21824 1.01413 0.99575 0.96642 0.87877 0.91913 0.91961 0.89075 0.89411 0.88994 0.80386 0.77338 0.93144 0.92733 0.92464 0.93029 0.96214 0.89407 0.93656 0.91667 0.94352 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 101.05 1.05 1.34 16 2 O -0.26 -3.66 8.73 -38.68 -0.34 -4.00 16 3 C 0.41 5.59 7.54 -16.19 -0.12 5.47 16 4 N -0.58 -6.77 9.26 -10.47 -0.10 -6.87 16 5 C 0.37 3.82 7.64 -157.13 -1.20 2.62 16 6 C -0.09 -0.54 10.31 36.01 0.37 -0.17 16 7 N -0.54 -5.90 10.31 -10.44 -0.11 -6.00 16 8 C 0.21 2.27 10.81 -16.81 -0.18 2.09 16 9 C -0.26 -3.50 5.92 -104.56 -0.62 -4.12 16 10 C 0.57 8.91 7.74 -12.47 -0.10 8.81 16 11 O -0.52 -10.09 14.98 -15.86 -0.24 -10.33 16 12 N -0.71 -10.30 4.55 -54.73 -0.25 -10.55 16 13 C 0.13 2.38 2.00 -67.81 -0.14 2.24 16 14 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 15 C -0.12 -2.09 5.46 -26.69 -0.15 -2.24 16 16 C -0.14 -2.75 6.10 -26.39 -0.16 -2.91 16 17 C 0.17 3.97 5.31 -3.49 -0.02 3.95 16 18 N -0.58 -13.97 2.98 -164.51 -0.49 -14.46 16 19 C -0.25 -6.63 8.57 -15.07 -0.13 -6.76 16 20 H 0.07 1.80 6.24 -52.48 -0.33 1.48 16 21 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 22 N -0.90 -25.58 11.21 55.49 0.62 -24.96 16 23 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.17 3.29 3.02 -67.60 -0.20 3.08 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 C -0.14 -2.49 7.84 37.16 0.29 -2.20 16 30 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.18 1.34 6.53 -52.49 -0.34 1.00 16 37 H 0.39 4.44 6.73 -40.82 -0.27 4.17 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 2.30 6.12 -51.93 -0.32 1.99 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 46 H 0.04 0.57 7.81 -51.93 -0.41 0.16 16 47 H 0.05 1.07 7.44 -51.93 -0.39 0.68 16 LS Contribution 378.57 15.07 5.70 5.70 Total: -1.00 -32.85 378.57 -8.66 -41.51 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.05 Total: 2.32 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -1.39 Total: 11.25 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.32 Total: -62.84 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.58 Total: -14.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.85 -8.66 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993392580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -32.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds