Wall clock time and date at job start Tue Mar 31 2020 17:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35274 * 117.00224 * 2 1 4 4 N 1.32780 * 120.61453 * 359.72345 * 3 2 1 5 5 C 1.31719 * 120.87099 * 179.71560 * 4 3 2 6 6 C 1.50699 * 118.90025 * 180.30969 * 5 4 3 7 7 N 1.31936 * 122.20068 * 0.57317 * 5 4 3 8 8 C 1.32190 * 121.13954 * 359.71546 * 7 5 4 9 9 C 1.39805 * 118.97990 * 359.97438 * 8 7 5 10 10 C 1.47532 * 120.98542 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00284 * 134.53900 * 10 9 8 12 12 N 1.34780 * 119.99590 * 314.54553 * 10 9 8 13 13 C 1.47019 * 125.64699 * 4.87637 * 12 10 9 14 14 C 1.54332 * 107.26952 * 181.02628 * 13 12 10 15 15 H 1.08993 * 110.71942 * 140.55247 * 14 13 12 16 16 N 1.46496 * 110.71620 * 263.65305 * 14 13 12 17 17 C 1.36938 * 119.99959 * 273.54105 * 16 14 13 18 18 H 1.08003 * 119.99760 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00477 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99485 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47136 * 59.99907 * 21 19 17 23 23 H 1.48500 * 109.47453 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47011 * 300.00295 * 21 19 17 25 25 C 1.55157 * 102.94203 * 22.18814 * 14 13 12 26 26 C 1.53000 * 111.00088 * 82.57408 * 25 14 13 27 27 C 1.53000 * 111.00407 * 206.38724 * 25 14 13 28 28 C 1.47425 * 125.64698 * 184.57024 * 12 10 9 29 29 H 1.09008 * 109.46731 * 60.00188 * 1 2 3 30 30 H 1.08998 * 109.46980 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47227 * 300.00217 * 1 2 3 32 32 H 1.09003 * 109.47528 * 270.25212 * 6 5 4 33 33 H 1.08995 * 109.47302 * 30.25575 * 6 5 4 34 34 H 1.09002 * 109.47271 * 150.25415 * 6 5 4 35 35 H 1.08000 * 120.51488 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.88461 * 300.43862 * 13 12 10 37 37 H 1.08996 * 109.88825 * 61.45593 * 13 12 10 38 38 H 0.96999 * 120.00208 * 93.54346 * 16 14 13 39 39 H 0.97001 * 119.99692 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.47196 * 60.00284 * 26 25 14 41 41 H 1.09004 * 109.47099 * 179.97438 * 26 25 14 42 42 H 1.08998 * 109.47692 * 299.99637 * 26 25 14 43 43 H 1.09002 * 109.46993 * 60.00466 * 27 25 14 44 44 H 1.09002 * 109.46906 * 180.02562 * 27 25 14 45 45 H 1.08992 * 109.47231 * 299.99999 * 27 25 14 46 46 H 1.08997 * 110.36343 * 274.74648 * 28 12 10 47 47 H 1.09004 * 110.36690 * 37.06442 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3266 -0.0055 5 6 1.9248 3.5028 0.0001 6 6 1.0744 4.7469 0.0006 7 7 3.2382 3.6283 0.0001 8 6 4.0263 2.5670 0.0001 9 6 3.4482 1.2941 0.0006 10 6 4.2857 0.0795 0.0012 11 8 4.0229 -0.8399 0.7520 12 7 5.3424 -0.0107 -0.8306 13 6 5.8322 1.0586 -1.7128 14 6 7.0385 0.4933 -2.4919 15 1 7.0250 0.8372 -3.5261 16 7 8.2967 0.8651 -1.8401 17 6 8.8914 2.0634 -2.1329 18 1 8.4326 2.7345 -2.8439 19 6 10.0838 2.4156 -1.5158 20 7 10.6432 1.5975 -0.6496 21 14 10.8947 4.0505 -1.9146 22 1 9.9699 5.1594 -1.5674 23 1 12.1472 4.1867 -1.1285 24 1 11.2111 4.1054 -3.3644 25 6 6.8109 -1.0398 -2.4202 26 6 5.8266 -1.4990 -3.4978 27 6 8.1357 -1.7968 -2.5332 28 6 6.2024 -1.1958 -1.0018 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.8693 5.0474 -1.0270 33 1 0.1346 4.5445 0.5143 34 1 1.6040 5.5490 0.5147 35 1 5.1002 2.6814 -0.0003 36 1 5.0469 1.3539 -2.4087 37 1 6.1420 1.9176 -1.1176 38 1 8.7085 0.2626 -1.2013 39 1 11.4767 1.8434 -0.2186 40 1 6.2234 -1.2503 -4.4821 41 1 5.6855 -2.5774 -3.4253 42 1 4.8700 -0.9967 -3.3541 43 1 8.7932 -1.5025 -1.7151 44 1 7.9471 -2.8691 -2.4804 45 1 8.6105 -1.5582 -3.4847 46 1 6.9894 -1.2055 -0.2478 47 1 5.6079 -2.1076 -0.9426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995887068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:13 Heat of formation + Delta-G solvation = -22.513205 kcal Electronic energy + Delta-G solvation = -30017.080857 eV Core-core repulsion = 26007.369539 eV Total energy + Delta-G solvation = -4009.711318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.65561 -41.19440 -39.79341 -39.21622 -35.75310 -35.14742 -34.33601 -33.75414 -32.59830 -30.24994 -29.49876 -28.72915 -28.02856 -27.23785 -25.82249 -25.08019 -24.36874 -23.04413 -21.10092 -20.24644 -19.71167 -19.08462 -19.02576 -18.20346 -17.48163 -17.12297 -16.82335 -16.35212 -16.19112 -15.78816 -15.72784 -15.65232 -15.41507 -14.85512 -14.61354 -14.42532 -14.31119 -13.77676 -13.53347 -13.52047 -13.28845 -13.22739 -13.10721 -13.00037 -12.80692 -12.73670 -12.71792 -12.67624 -12.57243 -12.17263 -12.07308 -11.85320 -11.47101 -11.44533 -11.28506 -11.11197 -10.88334 -10.67521 -10.29112 -9.68765 -8.99701 -7.89353 -5.17850 -0.63929 -0.13807 1.45244 1.53111 1.54134 1.59745 1.68737 1.85905 2.46573 2.60000 2.71270 2.86901 3.23854 3.41089 3.53743 3.59765 3.78426 3.83668 3.91819 4.03844 4.12717 4.29846 4.31603 4.31866 4.44246 4.58662 4.60445 4.61106 4.69648 4.71696 4.77951 4.84679 4.89469 4.90049 5.00129 5.07528 5.09305 5.21666 5.23433 5.31257 5.39237 5.54033 5.56926 5.61551 5.88915 6.31305 6.39876 6.79408 6.94933 7.39871 8.12512 8.36415 9.33367 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011424 B = 0.004010 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.421143 B = 6981.497533 C = 8737.338782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.300 6.300 3 C 0.404 3.596 4 N -0.573 5.573 5 C 0.365 3.635 6 C -0.084 4.084 7 N -0.549 5.549 8 C 0.219 3.781 9 C -0.277 4.277 10 C 0.587 3.413 11 O -0.567 6.567 12 N -0.597 5.597 13 C 0.078 3.922 14 C 0.173 3.827 15 H 0.080 0.920 16 N -0.721 5.721 17 C -0.237 4.237 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.967 5.967 21 Si 0.964 3.036 22 H -0.279 1.279 23 H -0.303 1.303 24 H -0.278 1.278 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.119 4.119 28 C 0.122 3.878 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.182 0.818 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.376 0.624 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.057 -0.371 -3.907 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.202 6.202 3 C 0.216 3.784 4 N -0.305 5.305 5 C 0.100 3.900 6 C -0.142 4.142 7 N -0.268 5.268 8 C 0.054 3.946 9 C -0.285 4.285 10 C 0.375 3.625 11 O -0.448 6.448 12 N -0.328 5.328 13 C -0.047 4.047 14 C 0.062 3.938 15 H 0.097 0.903 16 N -0.360 5.360 17 C -0.369 4.369 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.617 5.617 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.204 1.204 25 C -0.077 4.077 26 C -0.180 4.180 27 C -0.177 4.177 28 C 0.000 4.000 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.199 0.801 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.210 0.790 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.704 -0.217 -3.560 21.995 hybrid contribution 1.460 -0.091 0.558 1.565 sum -20.244 -0.307 -3.002 20.468 Atomic orbital electron populations 1.23330 0.74279 1.05466 1.03377 1.86361 1.25700 1.23160 1.85001 1.20083 0.87901 0.85873 0.84589 1.68154 1.40414 0.98255 1.23662 1.24127 0.88335 0.93247 0.84293 1.20851 0.98167 0.89409 1.05784 1.68456 1.06070 1.33007 1.19316 1.23673 1.01398 0.85255 0.84265 1.20655 0.92689 0.96594 1.18603 1.17400 0.79590 0.85994 0.79513 1.90746 1.71964 1.41100 1.40947 1.48312 1.27922 1.16245 1.40349 1.23260 0.97942 0.90383 0.93155 1.21425 0.84382 0.92567 0.95385 0.90259 1.42577 1.22926 1.20139 1.50399 1.19568 1.02709 0.95535 1.19061 0.90045 1.25423 0.99201 1.01356 0.99999 1.69804 1.20550 1.38325 1.33008 0.85352 0.77377 0.80493 0.77362 1.20500 1.22991 1.20413 1.22011 0.96653 0.95261 0.93815 1.21634 0.97340 1.01652 0.97357 1.21503 0.94778 0.99424 1.01971 1.22355 0.92629 0.88025 0.96998 0.90901 0.85732 0.91364 0.87172 0.87804 0.88064 0.80086 0.90766 0.91774 0.78980 0.94259 0.90976 0.91045 0.93092 0.94143 0.91019 0.92259 0.93071 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.41 113.37 1.18 1.70 16 2 O -0.30 -8.56 9.58 -76.69 -0.73 -9.30 16 3 C 0.40 11.99 7.52 85.17 0.64 12.63 16 4 N -0.57 -14.50 9.26 -299.85 -2.78 -17.28 16 5 C 0.37 8.57 7.64 138.73 1.06 9.63 16 6 C -0.08 -1.12 10.31 71.24 0.73 -0.39 16 7 N -0.55 -15.14 10.31 -186.94 -1.93 -17.07 16 8 C 0.22 6.56 9.84 85.02 0.84 7.40 16 9 C -0.28 -8.93 5.48 -19.83 -0.11 -9.03 16 10 C 0.59 21.50 7.25 86.69 0.63 22.13 16 11 O -0.57 -24.15 16.78 4.92 0.08 -24.06 16 12 N -0.60 -20.35 3.31 -815.10 -2.70 -23.05 16 13 C 0.08 2.54 5.03 86.73 0.44 2.98 16 14 C 0.17 6.02 2.86 46.18 0.13 6.15 16 15 H 0.08 2.66 8.02 -2.39 -0.02 2.64 16 16 N -0.72 -32.61 4.62 -317.33 -1.47 -34.07 16 17 C -0.24 -11.99 9.98 84.03 0.84 -11.15 16 18 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 20 N -0.97 -56.72 13.06 21.65 0.28 -56.44 16 21 Si 0.96 44.15 29.55 68.60 2.03 46.18 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 C -0.08 -2.24 0.84 -50.71 -0.04 -2.28 16 26 C -0.12 -2.84 8.58 71.98 0.62 -2.22 16 27 C -0.12 -3.58 8.22 71.98 0.59 -2.99 16 28 C 0.12 4.03 5.81 86.93 0.50 4.54 16 29 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 30 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.18 5.50 5.82 -2.91 -0.02 5.48 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.31 5.84 -2.39 -0.01 2.29 16 38 H 0.38 18.78 6.12 -92.71 -0.57 18.21 16 39 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.21 7.91 -2.39 -0.02 1.19 16 43 H 0.04 1.46 6.39 -2.39 -0.02 1.45 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 47 H 0.08 2.47 8.00 -2.38 -0.02 2.46 16 Total: -1.00 -68.91 384.79 1.73 -67.18 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.42 Total: 31.97 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 8.52 Total: 35.94 kcal Atomic # 7 Polarization: -139.32 SS G_CDS: -8.59 Total: -147.90 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.65 Total: -33.36 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.91 1.73 -67.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995887068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds