Wall clock time and date at job start Tue Mar 31 2020 17:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35280 * 117.00166 * 2 1 4 4 N 1.32774 * 120.61586 * 0.02664 * 3 2 1 5 5 C 1.31722 * 120.87350 * 179.97438 * 4 3 2 6 6 C 1.50698 * 118.89809 * 179.97438 * 5 4 3 7 7 N 1.31936 * 122.19673 * 0.02562 * 5 4 3 8 8 C 1.32194 * 121.13997 * 359.65835 * 7 5 4 9 9 C 1.39804 * 118.97835 * 0.61483 * 8 7 5 10 10 C 1.47535 * 120.97815 * 179.69241 * 9 8 7 11 11 O 1.21589 * 119.99786 * 126.35537 * 10 9 8 12 12 N 1.34774 * 119.99969 * 306.35632 * 10 9 8 13 13 C 1.46927 * 120.63260 * 354.17604 * 12 10 9 14 14 C 1.53185 * 108.77455 * 233.58279 * 13 12 10 15 15 C 1.53040 * 109.31859 * 305.36722 * 14 13 12 16 16 H 1.08997 * 109.46224 * 181.38578 * 15 14 13 17 17 N 1.46496 * 109.45611 * 301.35754 * 15 14 13 18 18 C 1.36938 * 120.00326 * 274.99359 * 17 15 14 19 19 H 1.07998 * 119.99869 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00130 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00126 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99874 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47300 * 90.00110 * 22 20 18 24 24 H 1.48501 * 109.47076 * 209.99747 * 22 20 18 25 25 H 1.48497 * 109.47285 * 330.00010 * 22 20 18 26 26 C 1.53347 * 109.60707 * 61.37170 * 15 14 13 27 27 H 1.08998 * 109.47280 * 58.54880 * 26 15 14 28 28 C 1.52994 * 109.68484 * 178.75191 * 26 15 14 29 29 C 1.46931 * 120.62766 * 174.15037 * 12 10 9 30 30 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46812 * 300.00242 * 1 2 3 32 32 H 1.09007 * 109.46884 * 59.99760 * 1 2 3 33 33 H 1.09002 * 109.47379 * 90.00141 * 6 5 4 34 34 H 1.09009 * 109.46620 * 209.99552 * 6 5 4 35 35 H 1.08993 * 109.47299 * 329.99740 * 6 5 4 36 36 H 1.07997 * 120.51070 * 180.30846 * 8 7 5 37 37 H 1.08998 * 109.58502 * 353.37810 * 13 12 10 38 38 H 1.09001 * 109.58638 * 113.80004 * 13 12 10 39 39 H 1.09006 * 109.49767 * 65.31770 * 14 13 12 40 40 H 1.09001 * 109.49811 * 185.41060 * 14 13 12 41 41 H 0.97000 * 120.00067 * 95.00249 * 17 15 14 42 42 H 0.97004 * 119.99955 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.47217 * 179.75426 * 28 26 15 44 44 H 1.09006 * 109.47273 * 299.74846 * 28 26 15 45 45 H 1.08998 * 109.47666 * 59.75317 * 28 26 15 46 46 H 1.09000 * 109.58707 * 246.19988 * 29 12 10 47 47 H 1.08998 * 109.58458 * 6.48823 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3321 2.3266 0.0005 5 6 1.9249 3.5029 0.0010 6 6 1.0744 4.7470 0.0010 7 7 3.2383 3.6283 0.0005 8 6 4.0263 2.5669 0.0063 9 6 3.4482 1.2940 -0.0002 10 6 4.2858 0.0795 -0.0010 11 8 4.1139 -0.7781 0.8435 12 7 5.2416 -0.0792 -0.9379 13 6 5.3782 0.8842 -2.0388 14 6 5.3483 0.1222 -3.3673 15 6 6.4219 -0.9684 -3.3497 16 1 6.4192 -1.4961 -4.3034 17 7 7.7354 -0.3567 -3.1341 18 6 8.4427 0.1389 -4.1967 19 1 8.0320 0.0792 -5.1938 20 6 9.6876 0.7181 -3.9925 21 7 10.1883 0.7905 -2.7774 22 14 10.6520 1.3947 -5.4421 23 1 10.2980 2.8221 -5.6493 24 1 12.1066 1.2807 -5.1654 25 1 10.3183 0.6195 -6.6639 26 6 6.1293 -1.9603 -2.2173 27 1 5.1414 -2.3973 -2.3633 28 6 7.1840 -3.0685 -2.2176 29 6 6.1672 -1.2187 -0.8773 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.8690 5.0467 1.0287 34 1 1.6044 5.5493 -0.5124 35 1 0.1349 4.5448 -0.5132 36 1 5.1002 2.6814 0.0108 37 1 4.5527 1.5952 -2.0066 38 1 6.3250 1.4159 -1.9437 39 1 4.3679 -0.3347 -3.5028 40 1 5.5448 0.8128 -4.1874 41 1 8.1042 -0.3027 -2.2385 42 1 11.0581 1.1956 -2.6347 43 1 6.9752 -3.7690 -1.4090 44 1 7.1566 -3.5960 -3.1712 45 1 8.1715 -2.6305 -2.0730 46 1 7.1783 -0.8585 -0.6876 47 1 5.8637 -1.8939 -0.0773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036058194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:05 Heat of formation + Delta-G solvation = -6.828618 kcal Electronic energy + Delta-G solvation = -30061.628278 eV Core-core repulsion = 26052.597095 eV Total energy + Delta-G solvation = -4009.031183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64110 -39.77612 -38.80406 -37.61409 -34.45757 -33.72756 -33.05236 -32.55478 -31.42621 -29.41107 -29.15524 -27.82411 -26.17657 -25.11049 -24.09305 -23.54940 -23.18177 -21.67472 -20.22531 -18.77596 -18.48319 -17.96532 -17.37472 -17.04162 -16.51589 -15.83211 -15.19168 -15.01725 -14.87557 -14.74963 -14.43530 -14.33274 -13.99334 -13.70127 -13.48629 -13.30772 -12.94170 -12.80859 -12.70528 -12.54541 -12.32265 -12.22676 -11.86071 -11.61547 -11.59889 -11.38287 -11.18624 -10.92294 -10.80687 -10.58184 -10.50233 -10.38877 -10.20299 -9.85718 -9.74967 -9.63579 -9.56139 -9.16331 -8.94408 -8.26530 -6.99944 -5.81047 -3.09528 0.42624 0.91396 2.55965 2.77771 3.12980 3.40402 3.46626 3.47785 3.49852 3.60550 3.83448 4.43854 4.55913 4.65156 4.88710 4.95265 5.01466 5.05275 5.16317 5.23968 5.26448 5.29549 5.34498 5.36287 5.50284 5.56452 5.61206 5.71329 5.79669 5.90359 5.98611 6.04672 6.05872 6.21567 6.30166 6.37680 6.48852 6.54006 6.59994 6.66197 6.74663 6.84837 6.90758 6.98489 7.62412 7.67148 7.79062 8.29456 8.37490 9.49338 10.05428 10.40842 11.41276 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014020 B = 0.003540 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.619881 B = 7906.775497 C = 9116.483203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.281 6.281 3 C 0.404 3.596 4 N -0.576 5.576 5 C 0.366 3.634 6 C -0.087 4.087 7 N -0.538 5.538 8 C 0.217 3.783 9 C -0.253 4.253 10 C 0.574 3.426 11 O -0.533 6.533 12 N -0.593 5.593 13 C 0.113 3.887 14 C -0.149 4.149 15 C 0.179 3.821 16 H 0.051 0.949 17 N -0.718 5.718 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.108 4.108 27 H 0.066 0.934 28 C -0.137 4.137 29 C 0.120 3.880 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.183 0.817 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 2.331 5.165 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.183 6.183 3 C 0.217 3.783 4 N -0.308 5.308 5 C 0.100 3.900 6 C -0.145 4.145 7 N -0.257 5.257 8 C 0.052 3.948 9 C -0.262 4.262 10 C 0.360 3.640 11 O -0.411 6.411 12 N -0.325 5.325 13 C -0.009 4.009 14 C -0.190 4.190 15 C 0.069 3.931 16 H 0.069 0.931 17 N -0.361 5.361 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.128 4.128 27 H 0.084 0.916 28 C -0.195 4.195 29 C -0.002 4.002 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.200 0.800 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.278 2.367 5.439 20.170 hybrid contribution 0.970 -0.163 -0.638 1.172 sum -18.308 2.204 4.802 19.055 Atomic orbital electron populations 1.23023 0.76500 1.03687 1.02701 1.86362 1.23381 1.23212 1.85386 1.19956 0.88064 0.85129 0.85182 1.67998 1.41053 0.98510 1.23210 1.23158 0.88299 0.92087 0.86498 1.20644 0.98293 0.91405 1.04180 1.68338 1.05322 1.33402 1.18657 1.23470 1.01074 0.85134 0.85117 1.20806 0.92352 0.97444 1.15589 1.17525 0.79674 0.85020 0.81780 1.90770 1.68940 1.42774 1.38584 1.48030 1.31759 1.27096 1.25590 1.21804 1.02235 0.90792 0.86093 1.22513 0.99427 1.00597 0.96436 1.20261 0.86354 0.90904 0.95603 0.93069 1.42472 1.15455 1.70212 1.07944 1.19212 0.98443 1.30846 0.88438 0.91284 1.24687 0.97762 1.01875 0.96310 1.69643 1.19008 1.50185 1.19160 0.86249 0.79490 0.78871 0.81899 1.21809 1.21883 1.20879 1.21755 0.99204 0.96421 0.95455 0.91579 1.21655 0.99969 0.97066 1.00763 1.21698 0.92851 0.87336 0.98275 0.88000 0.91834 0.91862 0.89193 0.88978 0.89496 0.80003 0.91922 0.89284 0.93412 0.90667 0.78084 0.93512 0.93705 0.92804 0.90998 0.90332 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.41 101.05 1.05 1.39 16 2 O -0.28 -3.99 9.81 -18.33 -0.18 -4.17 16 3 C 0.40 5.85 7.53 -16.19 -0.12 5.73 16 4 N -0.58 -7.36 9.26 -10.47 -0.10 -7.46 16 5 C 0.37 4.31 7.64 -157.14 -1.20 3.11 16 6 C -0.09 -0.65 10.31 36.00 0.37 -0.27 16 7 N -0.54 -6.97 10.31 -10.44 -0.11 -7.08 16 8 C 0.22 2.90 9.09 -16.81 -0.15 2.74 16 9 C -0.25 -3.80 4.64 -104.56 -0.48 -4.28 16 10 C 0.57 9.79 6.92 -12.47 -0.09 9.70 16 11 O -0.53 -10.57 16.24 4.49 0.07 -10.50 16 12 N -0.59 -9.73 2.97 -173.99 -0.52 -10.24 16 13 C 0.11 1.81 5.36 -3.71 -0.02 1.79 16 14 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 15 C 0.18 3.30 2.54 -67.73 -0.17 3.13 16 16 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 17 N -0.72 -16.14 3.65 -53.24 -0.19 -16.33 16 18 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.53 13.06 55.49 0.72 -25.80 16 22 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.11 -1.77 2.68 -90.34 -0.24 -2.02 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 28 C -0.14 -2.17 9.07 37.15 0.34 -1.84 16 29 C 0.12 2.02 5.42 -3.70 -0.02 2.00 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 32 H 0.06 0.54 8.12 -51.92 -0.42 0.12 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.18 2.18 7.79 -52.49 -0.41 1.77 16 37 H 0.06 0.91 5.38 -51.93 -0.28 0.63 16 38 H 0.09 1.60 7.74 -51.93 -0.40 1.20 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.38 9.20 5.93 -40.82 -0.24 8.96 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.31 7.55 -51.93 -0.39 0.92 16 46 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 47 H 0.09 1.45 6.99 -51.93 -0.36 1.08 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -31.35 380.76 -7.77 -39.12 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.05 Total: 8.30 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -1.14 Total: 11.92 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -0.19 Total: -66.91 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.11 Total: -14.67 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.35 -7.77 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036058194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.294 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds