Wall clock time and date at job start Tue Mar 31 2020 18:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29950 * 126.29128 * 2 1 4 4 O 1.21298 * 110.25756 * 179.97438 * 3 2 1 5 5 C 1.33648 * 109.80744 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.54917 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46770 * 270.01894 * 6 5 4 8 8 C 1.50700 * 109.46770 * 179.97438 * 7 6 5 9 9 O 1.21277 * 120.00623 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99590 * 180.02562 * 8 7 6 11 11 C 1.46943 * 120.44485 * 359.72283 * 10 8 7 12 12 C 1.54069 * 108.30165 * 125.72363 * 11 10 8 13 13 H 1.09000 * 110.52480 * 172.86989 * 12 11 10 14 14 C 1.53367 * 108.83411 * 294.51350 * 12 11 10 15 15 C 1.53005 * 109.25334 * 60.25553 * 14 12 11 16 16 C 1.53005 * 109.80314 * 60.57594 * 15 14 12 17 17 C 1.53365 * 109.27650 * 299.44281 * 16 15 14 18 18 H 1.09003 * 110.59123 * 178.09107 * 17 16 15 19 19 C 1.46954 * 120.43924 * 180.02562 * 10 8 7 20 20 N 1.47571 * 107.69741 * 51.33458 * 12 11 10 21 21 C 1.36940 * 121.60773 * 120.37228 * 20 12 11 22 22 H 1.08001 * 119.99736 * 152.59435 * 21 20 12 23 23 C 1.38801 * 120.00240 * 332.59060 * 21 20 12 24 24 N 1.31626 * 120.00083 * 341.95078 * 23 21 20 25 25 Si 1.86806 * 120.00267 * 161.95153 * 23 21 20 26 26 H 1.48497 * 109.47074 * 59.99848 * 25 23 21 27 27 H 1.48494 * 109.47266 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46851 * 300.00059 * 25 23 21 29 29 N 1.31128 * 106.89796 * 359.97438 * 5 4 3 30 30 H 1.09003 * 109.46846 * 269.99504 * 1 2 3 31 31 H 1.08998 * 109.47214 * 29.99662 * 1 2 3 32 32 H 1.09003 * 109.46806 * 149.99798 * 1 2 3 33 33 H 1.08997 * 109.47018 * 30.01510 * 6 5 4 34 34 H 1.08993 * 109.47196 * 150.02098 * 6 5 4 35 35 H 1.08997 * 109.47036 * 299.99605 * 7 6 5 36 36 H 1.09009 * 109.47065 * 60.00368 * 7 6 5 37 37 H 1.09000 * 109.62275 * 245.49295 * 11 10 8 38 38 H 1.08995 * 109.62348 * 6.04994 * 11 10 8 39 39 H 1.09002 * 109.50410 * 300.32100 * 14 12 11 40 40 H 1.09000 * 109.50613 * 180.18855 * 14 12 11 41 41 H 1.09006 * 109.41696 * 300.47350 * 15 14 12 42 42 H 1.09005 * 109.36280 * 180.64783 * 15 14 12 43 43 H 1.08997 * 109.50593 * 179.49591 * 16 15 14 44 44 H 1.09003 * 109.53110 * 59.40180 * 16 15 14 45 45 H 1.08998 * 109.62386 * 353.95678 * 19 10 8 46 46 H 1.09000 * 109.62953 * 114.54050 * 19 10 8 47 47 H 0.97000 * 119.99437 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7970 -1.4370 0.0003 7 6 5.2260 -1.7124 -1.4423 8 6 6.4934 -2.5277 -1.4424 9 8 7.0036 -2.8557 -0.3922 10 7 7.0606 -2.8915 -2.6096 11 6 6.4481 -2.5036 -3.8878 12 6 7.5108 -1.7744 -4.7319 13 1 7.1342 -1.5810 -5.7364 14 6 7.8825 -0.4609 -4.0329 15 6 8.4495 -0.7704 -2.6459 16 6 9.7051 -1.6343 -2.7801 17 6 9.3410 -2.9523 -3.4748 18 1 10.2278 -3.5711 -3.6119 19 6 8.2961 -3.6869 -2.6211 20 7 8.7150 -2.6264 -4.7708 21 6 9.2268 -3.0922 -5.9525 22 1 10.2806 -3.3141 -6.0344 23 6 8.3912 -3.2794 -7.0449 24 7 7.0888 -3.3586 -6.8714 25 14 9.1149 -3.4189 -8.7614 26 1 10.0411 -4.5784 -8.8154 27 1 8.0203 -3.6141 -9.7457 28 1 9.8587 -2.1756 -9.0875 29 7 2.3030 -1.0841 0.0002 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 5.5841 -0.8856 0.5144 34 1 4.6206 -2.3822 0.5136 35 1 4.4388 -2.2639 -1.9565 36 1 5.4025 -0.7672 -1.9557 37 1 6.1056 -3.3942 -4.4148 38 1 5.6052 -1.8378 -3.7027 39 1 6.9937 0.1620 -3.9321 40 1 8.6321 0.0661 -4.6232 41 1 7.7022 -1.3058 -2.0601 42 1 8.7037 0.1626 -2.1428 43 1 10.1099 -1.8444 -1.7902 44 1 10.4505 -1.1042 -3.3731 45 1 8.6686 -3.7993 -1.6029 46 1 8.0959 -4.6682 -3.0512 47 1 6.5049 -3.4890 -7.6349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039816741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:42 Heat of formation + Delta-G solvation = 77.738868 kcal Electronic energy + Delta-G solvation = -30389.803779 eV Core-core repulsion = 26384.439717 eV Total energy + Delta-G solvation = -4005.364062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.72521 -40.68382 -37.93543 -36.26712 -34.76779 -33.92411 -33.00308 -32.19712 -31.36958 -30.27944 -29.35073 -27.28971 -25.99180 -25.11527 -23.71507 -23.35375 -21.75143 -21.47271 -21.06410 -19.39053 -18.36270 -18.18634 -17.64516 -17.18554 -16.22133 -15.54709 -15.40932 -14.77026 -14.71996 -14.45380 -14.11756 -13.85128 -13.81395 -13.56738 -13.29990 -12.98757 -12.96904 -12.81555 -12.56035 -12.47124 -12.39042 -12.18594 -11.94243 -11.53259 -11.39418 -11.27137 -11.16144 -11.08831 -10.96464 -10.74603 -10.40536 -10.25769 -10.15918 -10.08553 -10.05439 -9.67541 -9.54779 -9.24921 -8.70369 -7.83019 -6.68751 -5.92639 -3.32706 0.97248 2.04242 2.62183 2.89731 3.32211 3.37467 3.38532 3.40730 3.57486 3.87589 4.39455 4.58702 4.73543 4.85629 4.97597 5.09477 5.12337 5.17494 5.24805 5.30395 5.44152 5.61238 5.62823 5.67034 5.68406 5.71047 5.78745 5.80958 5.86467 5.90216 5.99669 6.18755 6.31913 6.35055 6.41367 6.46875 6.56726 6.62463 6.68752 6.82571 6.96541 7.04176 7.19273 7.43841 7.68557 7.92196 8.01119 8.28566 8.49381 9.06039 9.68002 10.29262 11.15957 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016710 B = 0.003174 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.245011 B = 8818.508080 C = 9622.424242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.192 3.808 6 C -0.011 4.011 7 C -0.141 4.141 8 C 0.516 3.484 9 O -0.560 6.560 10 N -0.585 5.585 11 C 0.098 3.902 12 C 0.179 3.821 13 H 0.115 0.885 14 C -0.134 4.134 15 C -0.138 4.138 16 C -0.122 4.122 17 C 0.153 3.847 18 H 0.078 0.922 19 C 0.101 3.899 20 N -0.579 5.579 21 C -0.248 4.248 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.902 5.902 25 Si 0.904 3.096 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.285 1.285 29 N -0.482 5.482 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 5.202 11.230 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.028 4.028 6 C -0.051 4.051 7 C -0.182 4.182 8 C 0.305 3.695 9 O -0.441 6.441 10 N -0.317 5.317 11 C -0.026 4.026 12 C 0.071 3.929 13 H 0.132 0.868 14 C -0.173 4.173 15 C -0.176 4.176 16 C -0.161 4.161 17 C 0.045 3.955 18 H 0.096 0.904 19 C -0.023 4.023 20 N -0.300 5.300 21 C -0.377 4.377 22 H 0.084 0.916 23 C -0.194 4.194 24 N -0.547 5.547 25 Si 0.734 3.266 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.211 1.211 29 N -0.217 5.217 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.333 5.477 11.580 15.282 hybrid contribution 0.395 -0.049 -1.130 1.198 sum -7.938 5.428 10.450 14.201 Atomic orbital electron populations 1.20130 0.83007 1.04711 1.04182 1.25925 1.00615 0.83610 1.00558 1.74637 0.89449 1.23990 1.21720 1.85305 1.22279 1.24891 1.65586 1.28892 0.97027 0.82066 0.94818 1.20001 0.87617 0.98889 0.98570 1.21707 0.97625 1.02360 0.96467 1.19910 0.85313 0.80411 0.83867 1.90672 1.64863 1.57571 1.30987 1.48252 1.25560 1.51738 1.06123 1.22613 0.95971 1.01128 0.82845 1.21153 0.86419 0.86701 0.98587 0.86759 1.22139 0.99360 0.99274 0.96521 1.22087 0.99121 0.98438 0.97960 1.21907 0.97389 0.97895 0.98881 1.21244 0.94310 0.93369 0.86561 0.90396 1.22259 0.85031 0.94263 1.00773 1.44352 1.29978 1.55262 1.00379 1.19117 0.92061 1.38737 0.87793 0.91563 1.24950 0.95476 1.00077 0.98877 1.69926 1.02250 1.52796 1.29704 0.86349 0.78012 0.78067 0.84203 1.20966 1.21664 1.21128 1.71934 0.99742 1.29329 1.20648 0.89427 0.89542 0.88969 0.87097 0.86330 0.87992 0.88082 0.89280 0.92010 0.93788 0.92663 0.89922 0.94789 0.93372 0.92682 0.90272 0.91701 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.17 1.97 8.22 -156.37 -1.28 0.68 16 3 N -0.39 -5.09 12.16 30.90 0.38 -4.72 16 4 O 0.08 0.97 11.31 18.09 0.20 1.18 16 5 C 0.19 2.27 7.77 -13.06 -0.10 2.17 16 6 C -0.01 -0.12 5.13 -27.88 -0.14 -0.27 16 7 C -0.14 -1.70 3.99 -27.88 -0.11 -1.81 16 8 C 0.52 8.06 5.02 -10.99 -0.06 8.01 16 9 O -0.56 -9.90 15.38 5.56 0.09 -9.82 16 10 N -0.59 -10.06 1.63 -171.92 -0.28 -10.34 16 11 C 0.10 1.78 5.78 -3.24 -0.02 1.76 16 12 C 0.18 3.66 2.63 -66.60 -0.18 3.49 16 13 H 0.11 2.69 5.96 -51.93 -0.31 2.38 16 14 C -0.13 -2.39 5.59 -26.54 -0.15 -2.54 16 15 C -0.14 -2.34 5.55 -26.73 -0.15 -2.49 16 16 C -0.12 -2.13 5.58 -26.54 -0.15 -2.28 16 17 C 0.15 2.95 3.61 -66.83 -0.24 2.70 16 18 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 19 C 0.10 1.83 5.89 -3.47 -0.02 1.81 16 20 N -0.58 -12.87 2.53 -155.13 -0.39 -13.26 16 21 C -0.25 -6.19 9.73 -15.06 -0.15 -6.34 16 22 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 23 C 0.00 0.12 4.99 -17.43 -0.09 0.03 16 24 N -0.90 -23.17 10.71 55.49 0.59 -22.58 16 25 Si 0.90 20.40 29.59 -169.99 -5.03 15.37 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 N -0.48 -6.16 11.55 -9.86 -0.11 -6.28 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.12 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.10 1.19 7.91 -51.93 -0.41 0.78 16 36 H 0.10 1.15 7.69 -51.92 -0.40 0.75 16 37 H 0.09 1.88 7.74 -51.93 -0.40 1.48 16 38 H 0.06 0.95 5.90 -51.93 -0.31 0.64 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.38 2.49 -52.42 -0.13 1.25 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.08 1.39 6.98 -51.93 -0.36 1.03 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -28.52 364.56 -8.45 -36.97 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.93 Total: 3.14 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.45 Total: 4.84 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.18 Total: -57.17 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.29 Total: -8.64 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.52 -8.45 -36.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039816741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.706 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds