Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29950 * 126.28435 * 2 1 4 4 O 1.21302 * 110.24466 * 179.72599 * 3 2 1 5 5 C 1.33639 * 109.81388 * 0.46760 * 4 3 2 6 6 C 1.50702 * 126.55078 * 179.80077 * 5 4 3 7 7 C 1.52992 * 109.47176 * 269.68849 * 6 5 4 8 8 C 1.50702 * 109.47176 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00099 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00020 * 179.97438 * 8 7 6 11 11 C 1.48252 * 126.99993 * 0.02562 * 10 8 7 12 12 C 1.55258 * 103.44533 * 141.54334 * 11 10 8 13 13 C 1.53232 * 102.46444 * 36.19500 * 12 11 10 14 14 C 1.53716 * 111.52038 * 101.30062 * 13 12 11 15 15 C 1.54585 * 102.78206 * 86.20467 * 14 13 12 16 16 N 1.47135 * 107.32400 * 20.89322 * 15 14 13 17 17 C 1.36945 * 125.60369 * 180.91585 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17 24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17 25 25 C 1.47699 * 108.78909 * 1.17580 * 16 15 14 26 26 C 1.47880 * 127.00212 * 179.97438 * 10 8 7 27 27 N 1.31134 * 106.89891 * 359.53906 * 5 4 3 28 28 H 1.09005 * 109.47328 * 269.97969 * 1 2 3 29 29 H 1.09001 * 109.47243 * 29.97164 * 1 2 3 30 30 H 1.08993 * 109.47528 * 149.97493 * 1 2 3 31 31 H 1.09000 * 109.46920 * 149.69003 * 6 5 4 32 32 H 1.09000 * 109.46950 * 29.69000 * 6 5 4 33 33 H 1.08999 * 109.47573 * 60.00094 * 7 6 5 34 34 H 1.09000 * 109.47305 * 299.99935 * 7 6 5 35 35 H 1.09004 * 110.62071 * 260.02516 * 11 10 8 36 36 H 1.08992 * 110.62671 * 22.88967 * 11 10 8 37 37 H 1.09001 * 110.80931 * 277.95210 * 12 11 10 38 38 H 1.09006 * 110.81254 * 154.44059 * 12 11 10 39 39 H 1.09001 * 110.75138 * 327.88759 * 14 13 12 40 40 H 1.08998 * 110.75155 * 204.52901 * 14 13 12 41 41 H 1.08995 * 109.87491 * 261.46040 * 15 14 13 42 42 H 1.08998 * 109.99302 * 140.38975 * 15 14 13 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.39332 * 95.95006 * 25 16 15 45 45 H 1.08993 * 110.39685 * 218.33942 * 25 16 15 46 46 H 1.09002 * 110.04433 * 85.88169 * 26 10 8 47 47 H 1.08998 * 110.09490 * 324.43770 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 0.0054 5 6 3.5298 -0.6211 -0.0007 6 6 4.7969 -1.4369 -0.0013 7 6 5.2253 -1.7127 -1.4439 8 6 6.4927 -2.5280 -1.4444 9 8 7.0029 -2.8565 -0.3944 10 7 7.0588 -2.8929 -2.6119 11 6 6.5710 -2.5795 -3.9764 12 6 7.8756 -2.3028 -4.7714 13 6 8.8552 -3.3104 -4.1606 14 6 9.0356 -4.5405 -5.0646 15 6 10.1529 -4.0915 -6.0340 16 7 10.8723 -2.9816 -5.3895 17 6 11.9240 -2.2918 -5.9311 18 1 12.3871 -1.4897 -5.3757 19 6 12.3949 -2.6237 -7.1941 20 7 11.8303 -3.6009 -7.8712 21 14 13.8291 -1.6823 -7.9332 22 1 14.2817 -0.6394 -6.9778 23 1 14.9474 -2.6198 -8.2083 24 1 13.3987 -1.0397 -9.2008 25 6 10.2777 -2.7378 -4.0596 26 6 8.2934 -3.6865 -2.7927 27 7 2.3029 -1.0841 -0.0004 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 4.6207 -2.3820 0.5124 32 1 5.5843 -0.8854 0.5125 33 1 5.4015 -0.7677 -1.9576 34 1 4.4379 -2.2642 -1.9576 35 1 6.0376 -3.4312 -4.3984 36 1 5.9323 -1.6964 -3.9624 37 1 8.2191 -1.2812 -4.6084 38 1 7.7307 -2.4988 -5.8338 39 1 8.1166 -4.7579 -5.6089 40 1 9.3542 -5.4047 -4.4818 41 1 9.7150 -3.7535 -6.9731 42 1 10.8383 -4.9181 -6.2212 43 1 12.1591 -3.8326 -8.7539 44 1 10.8454 -3.2585 -3.2884 45 1 10.2421 -1.6689 -3.8496 46 1 8.0607 -4.7511 -2.7646 47 1 9.0139 -3.4412 -2.0125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041529544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = 60.293227 kcal Electronic energy + Delta-G solvation = -28429.279904 eV Core-core repulsion = 24423.159343 eV Total energy + Delta-G solvation = -4006.120561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.93548 -40.36263 -38.65740 -36.48124 -35.77435 -34.97667 -32.77012 -31.90361 -30.36879 -29.54883 -29.26175 -28.62612 -26.61680 -25.13861 -23.94761 -23.34598 -22.79451 -21.57367 -20.25836 -19.39103 -18.82622 -18.36525 -17.83335 -17.14264 -16.84074 -16.20102 -15.76023 -15.07183 -14.86884 -14.67917 -14.36090 -14.03311 -13.99920 -13.86998 -13.60605 -13.22703 -13.16189 -12.91973 -12.76487 -12.62733 -12.53993 -12.18846 -11.98098 -11.71669 -11.62907 -11.51760 -11.37762 -11.30174 -11.15993 -10.90515 -10.81439 -10.29761 -10.21448 -10.04072 -9.99006 -9.89504 -9.76684 -9.65863 -8.71716 -8.61577 -6.84463 -5.73184 -3.06220 0.76179 1.83518 2.37455 2.50184 2.90826 3.28381 3.38315 3.44448 3.46474 3.67477 4.21682 4.40884 4.47870 4.56213 4.63512 4.73534 4.91894 4.93979 4.94166 5.00011 5.03387 5.17569 5.25891 5.34462 5.39462 5.44437 5.46310 5.53580 5.55098 5.65132 5.74653 5.80349 5.91486 5.98940 6.01538 6.20092 6.30738 6.37984 6.48936 6.53421 6.71513 6.80926 7.48067 7.54486 7.59562 7.80886 7.80900 8.02331 8.23676 9.20565 9.80507 10.46353 11.38499 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.002015 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.512625 B =13894.616648 C =14206.102269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.189 3.811 6 C -0.012 4.012 7 C -0.135 4.135 8 C 0.535 3.465 9 O -0.544 6.544 10 N -0.617 5.617 11 C 0.096 3.904 12 C -0.108 4.108 13 C -0.086 4.086 14 C -0.132 4.132 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.225 4.225 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.150 3.850 26 C 0.123 3.877 27 N -0.481 5.481 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.020 0.980 45 H 0.039 0.961 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.827 3.390 12.631 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.096 5.096 4 O 0.020 5.980 5 C -0.032 4.032 6 C -0.052 4.052 7 C -0.176 4.176 8 C 0.324 3.676 9 O -0.422 6.422 10 N -0.351 5.351 11 C -0.027 4.027 12 C -0.146 4.146 13 C -0.088 4.088 14 C -0.170 4.170 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.024 3.976 26 C 0.000 4.000 27 N -0.216 5.216 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.115 3.758 13.085 25.123 hybrid contribution 0.916 0.390 -0.616 1.170 sum -20.199 4.148 12.469 24.098 Atomic orbital electron populations 1.20146 0.82896 1.04743 1.04331 1.25946 1.00669 0.83526 1.00491 1.74665 0.89410 1.23937 1.21547 1.85312 1.22333 1.24814 1.65505 1.28830 0.96964 0.82156 0.95214 1.19982 0.87859 0.99137 0.98197 1.21591 0.96828 1.02106 0.97027 1.19848 0.85313 0.80056 0.82433 1.90730 1.64504 1.56572 1.30426 1.48960 1.26803 1.53659 1.05642 1.22772 0.97678 1.00685 0.81544 1.22472 0.92587 0.99623 0.99898 1.21651 0.96757 0.97013 0.93355 1.22827 1.00417 0.95585 0.98208 1.21197 0.90209 0.90553 0.92603 1.44554 1.36803 1.38269 1.13463 1.19099 1.06063 1.11596 0.98622 0.90459 1.24787 0.99748 0.98808 0.97179 1.69966 1.42892 1.31151 1.13010 0.86058 0.81931 0.78919 0.78950 1.20532 1.21797 1.21809 1.21448 0.89334 0.97391 0.89436 1.21961 0.85542 0.94828 0.97621 1.71935 0.99726 1.29376 1.20521 0.89309 0.89469 0.88954 0.86201 0.86879 0.87982 0.87947 0.90727 0.90487 0.90634 0.89459 0.91943 0.92223 0.93574 0.93978 0.93847 0.96193 0.94246 0.91345 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.17 1.62 8.22 -156.37 -1.28 0.33 16 3 N -0.39 -4.26 12.16 30.90 0.38 -3.88 16 4 O 0.08 0.81 11.31 18.11 0.20 1.01 16 5 C 0.19 1.73 7.77 -13.05 -0.10 1.63 16 6 C -0.01 -0.10 5.13 -27.89 -0.14 -0.24 16 7 C -0.13 -1.05 4.62 -27.89 -0.13 -1.18 16 8 C 0.54 6.26 7.89 -10.98 -0.09 6.17 16 9 O -0.54 -8.15 16.33 5.56 0.09 -8.06 16 10 N -0.62 -7.41 3.31 -170.00 -0.56 -7.98 16 11 C 0.10 0.97 6.96 -1.88 -0.01 0.96 16 12 C -0.11 -1.46 6.12 -25.42 -0.16 -1.62 16 13 C -0.09 -1.34 0.75 -153.88 -0.12 -1.45 16 14 C -0.13 -2.22 5.65 -25.53 -0.14 -2.37 16 15 C 0.18 4.10 5.33 -2.86 -0.02 4.08 16 16 N -0.60 -14.74 3.41 -170.37 -0.58 -15.32 16 17 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.47 10.30 55.49 0.57 -25.90 16 21 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.15 2.95 6.10 -3.03 -0.02 2.93 16 26 C 0.12 1.70 6.31 -3.50 -0.02 1.68 16 27 N -0.48 -4.96 11.55 -9.87 -0.11 -5.07 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.12 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.11 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.60 7.25 -51.93 -0.38 0.23 16 37 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 38 H 0.09 1.25 7.80 -51.93 -0.40 0.84 16 39 H 0.06 0.93 7.94 -51.93 -0.41 0.51 16 40 H 0.06 0.96 7.91 -51.93 -0.41 0.55 16 41 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 42 H 0.04 1.09 7.49 -51.93 -0.39 0.70 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 45 H 0.04 0.77 7.72 -51.93 -0.40 0.37 16 46 H 0.07 0.91 7.63 -51.93 -0.40 0.51 16 47 H 0.08 1.19 7.54 -51.93 -0.39 0.80 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -33.13 381.51 -8.67 -41.80 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -7.28 Total: -3.45 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -2.10 Total: 4.32 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.31 Total: -58.15 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.30 Total: -7.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.13 -8.67 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041529544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.095 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds