Wall clock time and date at job start Tue Mar 31 2020 18:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29956 * 126.28200 * 2 1 4 4 O 1.21307 * 110.24401 * 179.68381 * 3 2 1 5 5 C 1.33639 * 109.81223 * 0.46520 * 4 3 2 6 6 C 1.50700 * 126.54896 * 179.80352 * 5 4 3 7 7 C 1.52999 * 109.47011 * 269.69085 * 6 5 4 8 8 C 1.50699 * 109.47375 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99644 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00553 * 179.97438 * 8 7 6 11 11 C 1.46808 * 119.57494 * 359.97438 * 10 8 7 12 12 C 1.53461 * 107.59333 * 127.96727 * 11 10 8 13 13 C 1.52734 * 108.44275 * 58.08205 * 12 11 10 14 14 C 1.53017 * 110.80345 * 296.23279 * 13 12 11 15 15 H 1.09004 * 112.09442 * 290.71654 * 14 13 12 16 16 C 1.45123 * 119.58306 * 179.97438 * 10 8 7 17 17 H 1.09007 * 109.96741 * 348.05131 * 16 10 8 18 18 C 1.54419 * 111.60572 * 111.32688 * 16 10 8 19 19 C 1.54598 * 102.53604 * 156.35935 * 18 16 10 20 20 N 1.47124 * 107.23857 * 338.71147 * 19 18 16 21 21 C 1.36929 * 125.76623 * 177.25558 * 20 19 18 22 22 H 1.08001 * 119.99721 * 176.48388 * 21 20 19 23 23 C 1.38814 * 120.00169 * 356.48515 * 21 20 19 24 24 N 1.31623 * 119.99703 * 210.71451 * 23 21 20 25 25 Si 1.86797 * 120.00023 * 30.71112 * 23 21 20 26 26 H 1.48497 * 109.46964 * 275.16576 * 25 23 21 27 27 H 1.48495 * 109.47268 * 35.16909 * 25 23 21 28 28 H 1.48499 * 109.46972 * 155.16521 * 25 23 21 29 29 N 1.31125 * 106.89717 * 359.54121 * 5 4 3 30 30 H 1.08997 * 109.47220 * 270.02557 * 1 2 3 31 31 H 1.08997 * 109.47254 * 30.02947 * 1 2 3 32 32 H 1.09000 * 109.46467 * 150.02580 * 1 2 3 33 33 H 1.09000 * 109.47252 * 149.69191 * 6 5 4 34 34 H 1.09002 * 109.47172 * 29.68704 * 6 5 4 35 35 H 1.09000 * 109.47755 * 60.00119 * 7 6 5 36 36 H 1.09009 * 109.47190 * 299.99955 * 7 6 5 37 37 H 1.09000 * 109.83463 * 247.49149 * 11 10 8 38 38 H 1.08995 * 109.83045 * 8.38333 * 11 10 8 39 39 H 1.08998 * 109.64022 * 177.76543 * 12 11 10 40 40 H 1.09002 * 109.64742 * 298.18614 * 12 11 10 41 41 H 1.08997 * 109.21848 * 175.89124 * 13 12 11 42 42 H 1.09005 * 109.21384 * 56.56624 * 13 12 11 43 43 H 1.08996 * 110.81705 * 274.82478 * 18 16 10 44 44 H 1.08999 * 110.81341 * 38.15322 * 18 16 10 45 45 H 1.09004 * 110.01815 * 219.23732 * 19 18 16 46 46 H 1.08994 * 109.77149 * 98.04926 * 19 18 16 47 47 H 0.96999 * 120.00500 * 354.97398 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0476 0.0000 4 8 3.4419 0.7125 0.0063 5 6 3.5299 -0.6210 0.0008 6 6 4.7970 -1.4368 0.0014 7 6 5.2263 -1.7132 -1.4408 8 6 6.4931 -2.5295 -1.4403 9 8 7.0026 -2.8574 -0.3897 10 7 7.0598 -2.8950 -2.6072 11 6 6.4348 -2.4934 -3.8734 12 6 7.5142 -1.8173 -4.7295 13 6 8.6604 -2.8063 -4.9316 14 6 9.3251 -3.1481 -3.5964 15 1 9.8762 -2.3026 -3.1845 16 6 8.2799 -3.6806 -2.5960 17 1 8.7015 -3.6992 -1.5909 18 6 8.0373 -5.1153 -3.1130 19 6 9.4434 -5.5409 -3.5944 20 7 10.2125 -4.3101 -3.8359 21 6 11.5248 -4.2493 -4.2222 22 1 11.9831 -3.2934 -4.4287 23 6 12.2660 -5.4162 -4.3483 24 7 13.5619 -5.4007 -4.1183 25 14 11.4244 -7.0083 -4.8442 26 1 10.8562 -7.6640 -3.6391 27 1 10.3337 -6.7125 -5.8075 28 1 12.4143 -7.9142 -5.4804 29 7 2.3031 -1.0839 0.0006 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3632 -0.8903 -0.5135 33 1 4.6206 -2.3817 0.5154 34 1 5.5841 -0.8850 0.5154 35 1 5.4028 -0.7683 -1.9549 36 1 4.4392 -2.2650 -1.9549 37 1 6.0492 -3.3721 -4.3905 38 1 5.6228 -1.7928 -3.6791 39 1 7.0945 -1.5403 -5.6965 40 1 7.8807 -0.9260 -4.2203 41 1 9.4012 -2.3655 -5.5986 42 1 8.2711 -3.7193 -5.3824 43 1 7.6878 -5.7629 -2.3089 44 1 7.3296 -5.1137 -3.9420 45 1 9.3639 -6.1154 -4.5172 46 1 9.9317 -6.1380 -2.8243 47 1 14.0116 -4.5616 -3.9323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049627919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:09 Heat of formation + Delta-G solvation = 40.691858 kcal Electronic energy + Delta-G solvation = -29226.708632 eV Core-core repulsion = 25219.738092 eV Total energy + Delta-G solvation = -4006.970541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.63720 -41.77956 -39.72278 -37.16618 -36.90595 -35.71685 -34.46951 -33.76435 -32.67133 -31.13492 -30.23552 -30.03265 -27.30145 -25.82423 -25.54072 -24.47119 -23.29685 -22.66234 -22.24906 -21.09715 -19.77931 -19.29082 -19.02870 -18.67117 -18.14543 -17.33374 -16.91575 -16.74438 -16.00388 -15.89060 -15.53644 -15.22709 -15.13918 -14.98439 -14.72151 -14.46001 -14.37845 -14.16721 -13.98425 -13.65303 -13.59573 -13.51716 -13.26372 -13.17158 -13.06688 -12.64276 -12.40091 -12.31799 -12.22741 -12.06540 -12.05978 -12.01652 -11.83137 -11.67164 -11.32176 -11.04751 -10.97434 -10.76816 -10.56571 -9.62803 -9.09976 -8.68638 -5.35230 0.07358 1.15955 1.40125 1.50125 1.59409 1.65525 1.69739 2.02208 2.53408 2.66497 3.00039 3.07085 3.31730 3.45442 3.69864 3.76190 3.85048 3.96784 4.02743 4.03807 4.08952 4.13653 4.22307 4.40224 4.44445 4.52299 4.52613 4.59203 4.61249 4.63582 4.77225 4.77385 4.79324 4.82145 4.93296 4.93962 4.95483 5.04726 5.12027 5.14207 5.20235 5.33937 5.45695 5.57874 5.64362 6.09478 6.42329 6.83288 7.12573 7.14809 7.49417 8.15217 8.84220 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029409 B = 0.002353 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.847633 B =11895.934742 C =11996.135136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.411 5.411 4 O 0.069 5.931 5 C 0.199 3.801 6 C -0.009 4.009 7 C -0.125 4.125 8 C 0.515 3.485 9 O -0.581 6.581 10 N -0.592 5.592 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.123 4.123 14 C 0.152 3.848 15 H 0.040 0.960 16 C 0.146 3.854 17 H 0.075 0.925 18 C -0.120 4.120 19 C 0.098 3.902 20 N -0.625 5.625 21 C -0.319 4.319 22 H 0.046 0.954 23 C -0.079 4.079 24 N -0.950 5.950 25 Si 1.107 2.893 26 H -0.274 1.274 27 H -0.267 1.267 28 H -0.308 1.308 29 N -0.499 5.499 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.039 0.961 46 H 0.024 0.976 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.899 10.203 3.219 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.122 5.122 4 O 0.013 5.987 5 C -0.021 4.021 6 C -0.049 4.049 7 C -0.165 4.165 8 C 0.304 3.696 9 O -0.461 6.461 10 N -0.323 5.323 11 C -0.019 4.019 12 C -0.164 4.164 13 C -0.163 4.163 14 C 0.045 3.955 15 H 0.058 0.942 16 C 0.040 3.960 17 H 0.093 0.907 18 C -0.158 4.158 19 C -0.027 4.027 20 N -0.352 5.352 21 C -0.447 4.447 22 H 0.064 0.936 23 C -0.274 4.274 24 N -0.593 5.593 25 Si 0.934 3.066 26 H -0.200 1.200 27 H -0.193 1.193 28 H -0.237 1.237 29 N -0.234 5.234 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -29.921 8.958 3.489 31.427 hybrid contribution 1.320 1.673 0.220 2.142 sum -28.601 10.631 3.709 30.738 Atomic orbital electron populations 1.20350 0.80552 1.05830 1.05451 1.26632 1.02111 0.83023 0.99174 1.74669 0.89761 1.24751 1.23053 1.85288 1.22270 1.25215 1.65896 1.28984 0.97063 0.81872 0.94189 1.19989 0.87337 0.98849 0.98677 1.21651 0.94966 1.02602 0.97286 1.21029 0.86257 0.79570 0.82700 1.90728 1.65529 1.57488 1.32368 1.47607 1.24555 1.52625 1.07501 1.22236 0.95781 1.01141 0.82768 1.21892 0.95195 0.97681 1.01596 1.21929 0.97723 0.99677 0.96941 1.21538 0.89881 0.89542 0.94550 0.94202 1.21205 0.84935 0.90786 0.99117 0.90665 1.22723 0.95371 0.95920 1.01815 1.21916 0.92502 0.90224 0.98052 1.45060 1.08359 1.01483 1.80285 1.19787 0.85820 0.94035 1.45073 0.93633 1.26927 0.96119 1.04581 0.99740 1.71039 1.11776 1.27146 1.49358 0.83351 0.73337 0.72514 0.77377 1.20008 1.19307 1.23655 1.71962 1.00223 1.29833 1.21360 0.88105 0.88383 0.87799 0.86503 0.86661 0.85369 0.85491 0.89430 0.85594 0.88039 0.91622 0.94375 0.92032 0.89643 0.88441 0.94374 0.95761 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.16 2.77 8.22 138.46 1.14 3.91 16 3 N -0.41 -8.17 12.16 -60.30 -0.73 -8.90 16 4 O 0.07 1.26 11.31 74.86 0.85 2.11 16 5 C 0.20 3.14 7.77 88.38 0.69 3.83 16 6 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 7 C -0.12 -1.39 4.00 29.85 0.12 -1.27 16 8 C 0.51 10.99 7.66 87.66 0.67 11.66 16 9 O -0.58 -17.71 15.31 -3.03 -0.05 -17.76 16 10 N -0.59 -13.13 2.73 -794.45 -2.17 -15.30 16 11 C 0.10 1.42 6.05 86.48 0.52 1.94 16 12 C -0.13 -2.29 6.11 30.66 0.19 -2.11 16 13 C -0.12 -3.73 5.10 30.51 0.16 -3.57 16 14 C 0.15 5.79 3.59 45.07 0.16 5.95 16 15 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 16 C 0.15 4.67 3.11 46.13 0.14 4.81 16 17 H 0.08 2.91 6.96 -2.38 -0.02 2.89 16 18 C -0.12 -3.68 6.08 31.62 0.19 -3.48 16 19 C 0.10 4.10 4.62 86.80 0.40 4.50 16 20 N -0.63 -30.12 2.89 -667.16 -1.93 -32.05 16 21 C -0.32 -18.59 10.45 84.04 0.88 -17.71 16 22 H 0.05 2.87 8.06 -2.91 -0.02 2.85 16 23 C -0.08 -4.79 5.45 84.86 0.46 -4.32 16 24 N -0.95 -61.76 13.70 21.65 0.30 -61.46 16 25 Si 1.11 54.05 24.66 68.60 1.69 55.74 16 26 H -0.27 -12.45 6.36 99.48 0.63 -11.82 16 27 H -0.27 -11.76 6.30 99.48 0.63 -11.13 16 28 H -0.31 -15.32 7.11 99.48 0.71 -14.62 16 29 N -0.50 -9.01 11.55 -303.18 -3.50 -12.51 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 1.66 8.10 -2.39 -0.02 1.64 16 34 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.13 0.86 7.62 -2.39 -0.02 0.84 16 36 H 0.13 0.92 7.93 -2.38 -0.02 0.91 16 37 H 0.09 1.06 7.52 -2.39 -0.02 1.04 16 38 H 0.13 0.77 5.82 -2.39 -0.01 0.76 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.88 7.12 -2.38 -0.02 1.86 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.10 2.44 6.81 -2.39 -0.02 2.42 16 45 H 0.04 1.61 4.57 -2.38 -0.01 1.60 16 46 H 0.02 1.12 6.57 -2.39 -0.02 1.11 16 47 H 0.25 16.23 8.73 -92.71 -0.81 15.42 16 Total: -1.00 -80.67 366.95 1.87 -78.80 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.79 Total: 6.97 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 6.62 Total: 4.37 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -8.04 Total: -130.23 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.80 Total: -15.65 kcal Atomic # 14 Polarization: 54.05 SS G_CDS: 1.69 Total: 55.74 kcal Total: -80.67 1.87 -78.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049627919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.496 kcal (2) G-P(sol) polarization free energy of solvation -80.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds