Wall clock time and date at job start Tue Mar 31 2020 19:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46859 * 2 1 4 4 N 1.31923 * 120.17060 * 96.50960 * 3 2 1 5 5 N 1.28275 * 122.32453 * 180.27380 * 4 3 2 6 6 C 1.31918 * 122.51530 * 359.72050 * 5 4 3 7 7 C 1.50696 * 120.01444 * 180.02562 * 6 5 4 8 8 C 1.38503 * 119.96701 * 359.97438 * 6 5 4 9 9 C 1.39724 * 120.17351 * 276.24032 * 3 2 1 10 10 C 1.48139 * 121.14096 * 0.02562 * 9 3 2 11 11 O 1.21512 * 120.00484 * 5.49840 * 10 9 3 12 12 N 1.34777 * 119.99744 * 185.49136 * 10 9 3 13 13 C 1.46499 * 120.00202 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47006 * 179.97438 * 13 12 10 15 15 H 1.08995 * 109.67704 * 61.30491 * 14 13 12 16 16 C 1.53295 * 109.67660 * 181.81881 * 14 13 12 17 17 O 1.42964 * 109.22241 * 172.02582 * 16 14 13 18 18 C 1.42965 * 114.16849 * 297.42198 * 17 16 14 19 19 C 1.53299 * 109.22241 * 62.57428 * 18 17 16 20 20 N 1.47146 * 109.68362 * 300.78059 * 14 13 12 21 21 C 1.36936 * 120.98190 * 9.71493 * 20 14 13 22 22 H 1.08003 * 120.00597 * 328.77801 * 21 20 14 23 23 C 1.38817 * 119.99977 * 148.77873 * 21 20 14 24 24 N 1.31619 * 119.99950 * 347.84639 * 23 21 20 25 25 Si 1.86794 * 120.00049 * 167.85073 * 23 21 20 26 26 H 1.48503 * 109.47830 * 89.99656 * 25 23 21 27 27 H 1.48506 * 109.47128 * 210.00056 * 25 23 21 28 28 H 1.48505 * 109.47069 * 329.99673 * 25 23 21 29 29 H 1.09002 * 109.47028 * 299.99704 * 1 2 3 30 30 H 1.09006 * 109.47101 * 59.99602 * 1 2 3 31 31 H 1.08994 * 109.47337 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47028 * 240.00296 * 2 1 3 33 33 H 1.08993 * 109.47103 * 120.00029 * 2 1 3 34 34 H 1.08998 * 109.47165 * 269.97842 * 7 6 5 35 35 H 1.09002 * 109.47620 * 29.97680 * 7 6 5 36 36 H 1.09002 * 109.47395 * 149.97726 * 7 6 5 37 37 H 1.08000 * 121.08412 * 180.02562 * 8 6 5 38 38 H 0.97011 * 119.99863 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.47018 * 59.99999 * 13 12 10 40 40 H 1.08999 * 109.46722 * 300.00184 * 13 12 10 41 41 H 1.09004 * 109.51748 * 291.94813 * 16 14 13 42 42 H 1.09005 * 109.51554 * 52.05253 * 16 14 13 43 43 H 1.08993 * 109.51025 * 182.50256 * 18 17 16 44 44 H 1.08996 * 109.50595 * 302.65297 * 18 17 16 45 45 H 1.09004 * 109.67845 * 67.42612 * 19 18 17 46 46 H 1.08992 * 109.67857 * 187.97863 * 19 18 17 47 47 H 0.96994 * 120.00070 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3752 2.0029 1.1332 5 7 2.8027 3.2114 1.1817 6 6 2.9366 3.9599 0.1037 7 6 3.4450 5.3733 0.2259 8 6 2.6107 3.4459 -1.1404 9 6 2.1426 2.1268 -1.2008 10 6 1.7719 1.5036 -2.4926 11 8 1.2704 0.3970 -2.5117 12 7 1.9907 2.1643 -3.6468 13 6 1.6236 1.5483 -4.9243 14 6 1.9745 2.5009 -6.0691 15 1 3.0483 2.6876 -6.0752 16 6 1.5508 1.8802 -7.4052 17 8 1.7102 2.8479 -8.4454 18 6 0.8900 4.0092 -8.2952 19 6 1.2798 4.7389 -7.0045 20 7 1.2515 3.7708 -5.8965 21 6 0.5712 4.0430 -4.7397 22 1 0.1235 3.2389 -4.1744 23 6 0.4568 5.3525 -4.2935 24 7 1.1919 6.2995 -4.8368 25 14 -0.7403 5.7707 -2.9219 26 1 -0.0542 5.6462 -1.6108 27 1 -1.2260 7.1632 -3.0962 28 1 -1.8926 4.8351 -2.9683 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.6034 6.0510 0.3692 35 1 4.1184 5.4447 1.0800 36 1 3.9808 5.6466 -0.6831 37 1 2.7137 4.0426 -2.0347 38 1 2.3914 3.0477 -3.6316 39 1 0.5526 1.3461 -4.9357 40 1 2.1712 0.6140 -5.0477 41 1 2.1744 1.0117 -7.6174 42 1 0.5063 1.5734 -7.3493 43 1 1.0383 4.6723 -9.1474 44 1 -0.1570 3.7110 -8.2428 45 1 2.2837 5.1516 -7.1051 46 1 0.5699 5.5423 -6.8084 47 1 1.1123 7.2144 -4.5248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050990820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:09 Heat of formation + Delta-G solvation = -14.327133 kcal Electronic energy + Delta-G solvation = -30574.837124 eV Core-core repulsion = 26565.480781 eV Total energy + Delta-G solvation = -4009.356343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.52564 -40.75991 -39.85489 -37.17267 -36.12778 -35.27408 -34.83123 -33.44225 -32.58302 -31.91519 -29.14823 -28.94858 -27.38449 -26.21771 -25.28037 -25.03569 -23.45969 -22.82095 -21.67368 -21.32496 -19.16129 -18.83197 -18.09799 -17.61963 -17.20593 -17.01745 -16.57701 -16.40330 -16.26412 -16.05628 -15.68231 -15.38317 -15.32106 -15.09823 -14.88096 -14.80114 -14.45267 -14.17358 -14.04593 -13.58317 -13.33164 -13.24480 -13.12823 -12.94421 -12.80321 -12.76228 -12.51911 -12.20927 -12.07416 -12.00268 -11.90127 -11.84895 -11.44759 -11.35146 -11.27955 -10.76732 -10.63589 -10.57270 -10.46308 -9.90995 -8.62571 -7.89754 -5.39458 -0.82346 -0.29682 1.33137 1.43129 1.46464 1.65769 2.02878 2.39907 2.43388 2.80292 3.04264 3.16267 3.24085 3.27526 3.43227 3.54647 3.68353 3.95288 4.02506 4.21495 4.23231 4.27119 4.34116 4.40897 4.48536 4.52310 4.60979 4.63064 4.64235 4.66414 4.67685 4.75966 4.88141 4.94131 5.01097 5.01911 5.11834 5.17144 5.26352 5.29315 5.31305 5.49761 5.63349 5.67799 6.30132 6.36168 6.50063 7.07672 7.10346 7.48945 7.74679 8.31788 9.14116 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.004851 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.385610 B = 5771.037510 C = 7016.323868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C 0.109 3.891 4 N -0.262 5.262 5 N -0.248 5.248 6 C 0.058 3.942 7 C -0.099 4.099 8 C -0.076 4.076 9 C -0.133 4.133 10 C 0.555 3.445 11 O -0.545 6.545 12 N -0.683 5.683 13 C 0.141 3.859 14 C 0.125 3.875 15 H 0.040 0.960 16 C 0.057 3.943 17 O -0.398 6.398 18 C 0.046 3.954 19 C 0.149 3.851 20 N -0.603 5.603 21 C -0.244 4.244 22 H 0.068 0.932 23 C -0.018 4.018 24 N -0.916 5.916 25 Si 0.924 3.076 26 H -0.280 1.280 27 H -0.294 1.294 28 H -0.289 1.289 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.164 0.836 38 H 0.412 0.588 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.050 0.950 43 H 0.103 0.897 44 H 0.043 0.957 45 H 0.010 0.990 46 H 0.064 0.936 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -6.431 2.216 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.106 4.106 3 C -0.036 4.036 4 N -0.103 5.103 5 N -0.090 5.090 6 C -0.086 4.086 7 C -0.157 4.157 8 C -0.106 4.106 9 C -0.147 4.147 10 C 0.340 3.660 11 O -0.425 6.425 12 N -0.334 5.334 13 C 0.017 3.983 14 C 0.019 3.981 15 H 0.058 0.942 16 C -0.021 4.021 17 O -0.316 6.316 18 C -0.032 4.032 19 C 0.024 3.976 20 N -0.329 5.329 21 C -0.374 4.374 22 H 0.085 0.915 23 C -0.216 4.216 24 N -0.561 5.561 25 Si 0.754 3.246 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.215 1.215 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.182 0.818 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.136 0.864 42 H 0.068 0.932 43 H 0.121 0.879 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.082 0.918 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.486 -7.171 3.705 8.792 hybrid contribution -1.000 1.558 -0.595 1.945 sum 2.486 -5.613 3.110 6.881 Atomic orbital electron populations 1.21548 0.93376 1.03156 1.00608 1.20679 0.97224 0.87768 1.04979 1.23352 0.92493 0.99434 0.88331 1.72935 1.09184 1.03764 1.24377 1.72720 1.08852 0.99689 1.27761 1.23289 0.95981 0.99980 0.89387 1.20822 1.02425 0.86882 1.05610 1.22877 0.92777 0.94257 1.00676 1.21215 1.01854 0.95671 0.96003 1.17858 0.79519 0.85192 0.83442 1.90677 1.44949 1.19784 1.87138 1.46008 1.61016 1.21161 1.05216 1.21246 1.00435 0.95361 0.81217 1.21577 0.95409 0.87137 0.94012 0.94217 1.22994 1.01208 0.91207 0.86729 1.87816 1.65768 1.30839 1.47208 1.23210 0.93460 0.87388 0.99164 1.21230 0.98563 0.92069 0.85762 1.44245 1.58749 1.15843 1.14083 1.19237 1.25931 0.92070 1.00184 0.91473 1.25400 0.99458 0.97284 0.99426 1.70060 1.40532 1.00930 1.44577 0.85970 0.80421 0.76938 0.81295 1.20633 1.22005 1.21466 0.93432 0.94124 0.89776 0.87678 0.88922 0.89481 0.88332 0.88386 0.81826 0.74902 0.92377 0.89223 0.86376 0.93209 0.87942 0.93908 0.97211 0.91765 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.50 71.98 0.68 -2.81 16 2 C -0.07 -1.87 5.48 29.85 0.16 -1.71 16 3 C 0.11 3.53 6.16 42.91 0.26 3.79 16 4 N -0.26 -8.89 11.42 -46.95 -0.54 -9.42 16 5 N -0.25 -8.22 11.41 -47.70 -0.54 -8.76 16 6 C 0.06 1.75 6.86 42.61 0.29 2.04 16 7 C -0.10 -2.23 10.19 71.23 0.73 -1.51 16 8 C -0.08 -2.38 9.34 22.79 0.21 -2.17 16 9 C -0.13 -4.39 5.92 -19.84 -0.12 -4.51 16 10 C 0.55 18.76 7.73 86.87 0.67 19.43 16 11 O -0.55 -19.26 12.01 -3.75 -0.05 -19.30 16 12 N -0.68 -22.78 3.67 -465.69 -1.71 -24.49 16 13 C 0.14 4.43 4.46 86.38 0.39 4.82 16 14 C 0.12 4.23 3.23 44.97 0.15 4.37 16 15 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 16 C 0.06 1.70 6.29 72.08 0.45 2.15 16 17 O -0.40 -13.49 10.74 -148.98 -1.60 -15.09 16 18 C 0.05 1.57 6.99 72.08 0.50 2.07 16 19 C 0.15 6.27 5.38 86.35 0.46 6.74 16 20 N -0.60 -25.09 3.03 -673.70 -2.04 -27.13 16 21 C -0.24 -11.04 6.96 84.03 0.58 -10.46 16 22 H 0.07 3.12 5.81 -2.91 -0.02 3.10 16 23 C -0.02 -0.85 5.02 84.86 0.43 -0.42 16 24 N -0.92 -45.91 11.23 21.65 0.24 -45.67 16 25 Si 0.92 40.49 29.57 68.60 2.03 42.52 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.28 6.89 -2.38 -0.02 1.27 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 3.01 5.91 -2.39 -0.01 3.00 16 33 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.10 1.92 8.09 -2.39 -0.02 1.91 16 37 H 0.16 5.00 6.65 -2.91 -0.02 4.98 16 38 H 0.41 14.50 5.41 -92.70 -0.50 14.00 16 39 H 0.06 2.00 7.64 -2.38 -0.02 1.98 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 41 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 42 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.06 3.04 6.39 -2.39 -0.02 3.02 16 47 H 0.25 12.54 8.31 -92.71 -0.77 11.77 16 Total: -1.00 -56.85 372.71 2.15 -54.69 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.50 Total: 30.84 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 5.86 Total: 21.83 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -4.59 Total: -115.48 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.65 Total: -34.39 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -56.85 2.15 -54.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050990820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.365 kcal (2) G-P(sol) polarization free energy of solvation -56.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds