Wall clock time and date at job start Tue Mar 31 2020 18:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30757 * 125.61507 * 2 1 4 4 C 1.33577 * 109.14910 * 180.02562 * 3 2 1 5 5 C 1.35031 * 107.97608 * 359.93862 * 4 3 2 6 6 N 1.35314 * 125.61750 * 180.02562 * 2 1 3 7 7 H 0.96991 * 126.49710 * 0.04194 * 6 2 1 8 8 C 1.50653 * 124.44963 * 180.02562 * 5 4 3 9 9 C 1.53393 * 108.38642 * 16.40545 * 8 5 4 10 10 H 1.09008 * 109.47446 * 70.34997 * 9 8 5 11 11 C 1.50696 * 109.47781 * 190.36249 * 9 8 5 12 12 O 1.21283 * 120.00099 * 119.99055 * 11 9 8 13 13 N 1.34779 * 119.99851 * 299.98667 * 11 9 8 14 14 C 1.46501 * 119.99668 * 179.72234 * 13 11 9 15 15 H 1.09002 * 110.64303 * 36.96605 * 14 13 11 16 16 C 1.54326 * 110.72041 * 273.82263 * 14 13 11 17 17 N 1.47024 * 107.27155 * 219.44321 * 16 14 13 18 18 C 1.36933 * 125.64788 * 178.90432 * 17 16 14 19 19 H 1.07998 * 120.00447 * 341.51807 * 18 17 16 20 20 C 1.38812 * 120.00207 * 161.52311 * 18 17 16 21 21 N 1.31617 * 120.00647 * 157.62112 * 20 18 17 22 22 Si 1.86807 * 119.99469 * 337.61353 * 20 18 17 23 23 H 1.48499 * 109.46727 * 84.54089 * 22 20 18 24 24 H 1.48500 * 109.46995 * 204.53760 * 22 20 18 25 25 H 1.48491 * 109.47262 * 324.54239 * 22 20 18 26 26 C 1.47426 * 108.70341 * 358.94615 * 17 16 14 27 27 C 1.54905 * 104.83180 * 24.12565 * 26 17 16 28 28 H 1.09000 * 111.00810 * 81.06737 * 27 26 17 29 29 O 1.42903 * 111.00300 * 204.92197 * 27 26 17 30 30 C 1.53116 * 109.44935 * 310.35747 * 9 8 5 31 31 C 1.50855 * 128.03275 * 179.83954 * 4 3 2 32 32 H 1.08997 * 109.47298 * 269.97814 * 1 2 3 33 33 H 1.08997 * 109.47248 * 29.98266 * 1 2 3 34 34 H 1.09006 * 109.46478 * 149.97827 * 1 2 3 35 35 H 1.09001 * 109.68409 * 256.67919 * 8 5 4 36 36 H 1.09008 * 109.70667 * 136.14432 * 8 5 4 37 37 H 0.96998 * 120.00442 * 0.02562 * 13 11 9 38 38 H 1.09000 * 109.88528 * 338.86621 * 16 14 13 39 39 H 1.08995 * 109.88247 * 99.87460 * 16 14 13 40 40 H 0.96995 * 120.00327 * 179.97438 * 21 20 18 41 41 H 1.08999 * 110.36634 * 142.96331 * 26 17 16 42 42 H 1.09004 * 110.36537 * 265.17729 * 26 17 16 43 43 H 0.96701 * 113.99485 * 292.19263 * 29 27 26 44 44 H 1.09002 * 109.46143 * 190.02823 * 30 9 8 45 45 H 1.09003 * 109.46309 * 309.99352 * 30 9 8 46 46 H 1.09003 * 109.67728 * 316.49378 * 31 4 3 47 47 H 1.09002 * 109.67500 * 76.99884 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0630 0.0000 4 6 3.5495 0.6844 -0.0006 5 6 3.5850 -0.6655 0.0004 6 7 2.2951 -1.1000 -0.0005 7 1 1.9972 -2.0230 -0.0015 8 6 4.8494 -1.4847 0.0008 9 6 6.0148 -0.5756 0.4110 10 1 5.9241 -0.3228 1.4674 11 6 7.3188 -1.2935 0.1762 12 8 8.1398 -0.8264 -0.5845 13 7 7.5727 -2.4546 0.8118 14 6 8.8379 -3.1556 0.5789 15 1 9.6555 -2.4443 0.4624 16 6 8.7335 -4.0747 -0.6564 17 7 9.4578 -5.3145 -0.3404 18 6 9.5838 -6.3981 -1.1681 19 1 8.9064 -6.5243 -1.9996 20 6 10.5823 -7.3347 -0.9382 21 7 10.4601 -8.5567 -1.4114 22 14 12.0998 -6.8603 0.0427 23 1 11.8158 -7.0027 1.4933 24 1 13.2285 -7.7502 -0.3305 25 1 12.4610 -5.4511 -0.2550 26 6 10.0250 -5.1983 1.0154 27 6 9.1327 -4.1531 1.7302 28 1 8.2133 -4.6096 2.0967 29 8 9.8434 -3.5137 2.7923 30 6 5.9802 0.7065 -0.4255 31 6 4.7776 1.5604 -0.0041 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3632 -0.8899 -0.5142 35 1 5.0287 -1.8835 -0.9977 36 1 4.7557 -2.3050 0.7124 37 1 6.9160 -2.8283 1.4200 38 1 7.6873 -4.2992 -0.8642 39 1 9.1865 -3.5879 -1.5200 40 1 11.1580 -9.2110 -1.2511 41 1 9.9740 -6.1570 1.5314 42 1 11.0564 -4.8490 0.9664 43 1 10.0502 -4.0978 3.5348 44 1 6.8994 1.2698 -0.2649 45 1 5.8917 0.4492 -1.4810 46 1 4.6432 2.3779 -0.7125 47 1 4.9434 1.9639 0.9948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077260363.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:55 Heat of formation + Delta-G solvation = -39.690015 kcal Electronic energy + Delta-G solvation = -29020.516016 eV Core-core repulsion = 25010.059856 eV Total energy + Delta-G solvation = -4010.456160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30086 -41.28995 -39.75234 -37.28033 -36.82156 -35.63482 -34.22302 -33.90121 -32.19760 -31.25600 -30.29972 -29.30383 -28.35353 -26.20566 -24.27168 -23.84501 -22.96463 -21.87118 -21.77966 -21.34757 -19.98224 -19.15914 -18.69311 -18.50042 -17.79837 -17.61150 -16.71400 -16.56629 -16.28820 -15.87747 -15.53732 -15.31707 -14.94925 -14.78985 -14.75825 -14.72063 -14.47908 -14.35521 -13.98006 -13.73968 -13.72484 -13.47698 -13.29354 -13.24340 -12.92687 -12.72942 -12.68012 -12.52401 -12.36637 -12.03902 -11.91118 -11.69086 -11.62212 -11.24252 -10.93042 -10.83193 -10.80203 -10.73276 -10.17755 -9.15998 -8.98974 -8.22932 -5.51951 1.02545 1.24484 1.38512 1.46126 1.55019 1.98546 2.07537 2.19472 2.35708 2.80530 3.07406 3.32969 3.38389 3.52602 3.64213 3.72824 3.80665 3.87309 3.97574 4.11512 4.14642 4.20219 4.26439 4.37931 4.42991 4.52917 4.57391 4.62900 4.68675 4.76460 4.78727 4.83387 4.89835 4.91137 4.96536 5.07120 5.12684 5.19285 5.29095 5.33491 5.41871 5.58624 5.80615 6.04302 6.51609 6.55285 6.65682 6.80581 7.14284 7.22966 7.45259 7.98147 8.96297 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002549 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.703543 B =10980.894204 C =11604.695666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.197 3.803 3 N -0.524 5.524 4 C -0.018 4.018 5 C -0.027 4.027 6 N -0.547 5.547 7 H 0.434 0.566 8 C -0.028 4.028 9 C -0.085 4.085 10 H 0.127 0.873 11 C 0.521 3.479 12 O -0.576 6.576 13 N -0.700 5.700 14 C 0.154 3.846 15 H 0.081 0.919 16 C 0.129 3.871 17 N -0.620 5.620 18 C -0.239 4.239 19 H 0.063 0.937 20 C -0.030 4.030 21 N -0.950 5.950 22 Si 0.943 3.057 23 H -0.257 1.257 24 H -0.307 1.307 25 H -0.281 1.281 26 C 0.076 3.924 27 C 0.108 3.892 28 H 0.107 0.893 29 O -0.563 6.563 30 C -0.094 4.094 31 C -0.027 4.027 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.418 0.582 38 H 0.050 0.950 39 H 0.019 0.981 40 H 0.265 0.735 41 H 0.061 0.939 42 H 0.025 0.975 43 H 0.401 0.599 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.239 15.872 11.216 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 N -0.245 5.245 4 C -0.148 4.148 5 C -0.144 4.144 6 N -0.152 5.152 7 H 0.275 0.725 8 C -0.066 4.066 9 C -0.107 4.107 10 H 0.145 0.855 11 C 0.308 3.692 12 O -0.454 6.454 13 N -0.352 5.352 14 C 0.047 3.953 15 H 0.100 0.900 16 C 0.003 3.997 17 N -0.348 5.348 18 C -0.367 4.367 19 H 0.081 0.919 20 C -0.226 4.226 21 N -0.596 5.596 22 Si 0.771 3.229 23 H -0.182 1.182 24 H -0.235 1.235 25 H -0.208 1.208 26 C -0.050 4.050 27 C 0.047 3.953 28 H 0.125 0.875 29 O -0.371 6.371 30 C -0.132 4.132 31 C -0.065 4.065 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.928 17.350 10.233 27.640 hybrid contribution 1.155 -2.131 0.224 2.434 sum -17.772 15.219 10.457 25.629 Atomic orbital electron populations 1.20325 0.82170 1.05111 1.04691 1.24015 0.96884 0.81047 1.04645 1.69914 1.02457 1.30338 1.21770 1.20846 0.93096 0.92173 1.08658 1.20835 0.86387 0.95184 1.11981 1.42762 1.05375 1.10755 1.56276 0.72503 1.19985 0.86845 0.96277 1.03513 1.21251 0.89682 0.95601 1.04150 0.85497 1.21043 0.88924 0.80322 0.78893 1.90724 1.49817 1.67154 1.37724 1.45748 1.19148 1.23059 1.47281 1.21544 0.87522 0.92958 0.93246 0.90041 1.21779 0.96511 0.85652 0.95749 1.44641 1.62970 1.14217 1.12951 1.18564 1.11350 0.97295 1.09483 0.91912 1.25600 1.00767 0.95372 1.00831 1.69939 1.35100 1.03208 1.51395 0.86019 0.80523 0.76660 0.79677 1.18247 1.23511 1.20764 1.22741 0.96543 0.99123 0.86577 1.22965 0.94834 0.90756 0.86734 0.87546 1.86455 1.78272 1.41153 1.31226 1.21365 0.98231 0.94434 0.99195 1.19922 0.87911 0.95939 1.02754 0.88839 0.89365 0.88489 0.90435 0.87379 0.74412 0.93215 0.96328 0.92626 0.92038 0.95745 0.74835 0.90367 0.92439 0.90476 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.20 3.31 8.16 137.97 1.13 4.44 16 3 N -0.52 -12.32 11.25 -175.89 -1.98 -14.30 16 4 C -0.02 -0.40 6.98 41.60 0.29 -0.11 16 5 C -0.03 -0.48 7.08 41.14 0.29 -0.18 16 6 N -0.55 -7.55 6.15 -174.57 -1.07 -8.63 16 7 H 0.43 3.02 8.96 -92.71 -0.83 2.19 16 8 C -0.03 -0.41 5.43 29.97 0.16 -0.25 16 9 C -0.09 -1.47 2.50 -11.37 -0.03 -1.50 16 10 H 0.13 1.65 8.12 -2.38 -0.02 1.63 16 11 C 0.52 12.94 7.13 87.66 0.62 13.56 16 12 O -0.58 -19.97 15.54 -3.04 -0.05 -20.02 16 13 N -0.70 -15.87 5.04 -436.90 -2.20 -18.07 16 14 C 0.15 4.83 2.97 46.18 0.14 4.97 16 15 H 0.08 2.99 7.70 -2.39 -0.02 2.97 16 16 C 0.13 5.09 6.99 86.73 0.61 5.70 16 17 N -0.62 -29.03 3.21 -691.99 -2.22 -31.25 16 18 C -0.24 -13.53 10.57 84.03 0.89 -12.64 16 19 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 20 C -0.03 -1.77 5.43 84.86 0.46 -1.30 16 21 N -0.95 -58.72 13.97 21.65 0.30 -58.42 16 22 Si 0.94 46.10 24.27 68.60 1.66 47.76 16 23 H -0.26 -11.26 6.49 99.48 0.65 -10.61 16 24 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 25 H -0.28 -13.93 6.66 99.48 0.66 -13.27 16 26 C 0.08 2.99 4.43 86.85 0.38 3.37 16 27 C 0.11 3.04 4.04 31.99 0.13 3.17 16 28 H 0.11 2.37 8.00 -2.39 -0.02 2.35 16 29 O -0.56 -13.87 13.47 -148.98 -2.01 -15.87 16 30 C -0.09 -1.86 4.64 30.77 0.14 -1.72 16 31 C -0.03 -0.51 6.30 30.03 0.19 -0.32 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.08 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.11 1.00 7.90 -2.38 -0.02 0.98 16 37 H 0.42 6.25 8.19 -92.71 -0.76 5.49 16 38 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 42 H 0.02 1.06 5.57 -2.39 -0.01 1.04 16 43 H 0.40 6.14 9.12 -74.06 -0.68 5.47 16 44 H 0.08 1.65 7.76 -2.39 -0.02 1.63 16 45 H 0.06 1.31 8.12 -2.39 -0.02 1.30 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -82.55 373.74 -2.75 -85.29 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -1.34 Total: 16.09 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.15 Total: 17.41 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -7.17 Total: -130.66 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -2.05 Total: -35.89 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.66 Total: 47.76 kcal Total: -82.55 -2.75 -85.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077260363.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.601 kcal (2) G-P(sol) polarization free energy of solvation -82.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds