Wall clock time and date at job start Tue Mar 31 2020 19:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46986 * 2 1 4 4 N 1.34660 * 125.79833 * 265.14864 * 3 2 1 5 5 H 0.97002 * 124.85622 * 0.04663 * 4 3 2 6 6 C 1.36452 * 110.29377 * 180.32056 * 4 3 2 7 7 C 1.34478 * 108.85728 * 359.72915 * 6 4 3 8 8 C 1.36760 * 125.80347 * 85.00334 * 3 2 1 9 9 C 1.47265 * 126.94091 * 359.96091 * 8 3 2 10 10 O 1.21628 * 120.00319 * 359.97438 * 9 8 3 11 11 N 1.34784 * 119.99868 * 179.71208 * 9 8 3 12 12 C 1.47016 * 125.65078 * 0.02562 * 11 9 8 13 13 C 1.54317 * 107.27257 * 181.02490 * 12 11 9 14 14 C 1.55150 * 102.94509 * 22.18903 * 13 12 11 15 15 H 1.09006 * 111.00336 * 82.57404 * 14 13 12 16 16 N 1.46897 * 111.00921 * 206.38708 * 14 13 12 17 17 C 1.46899 * 111.00083 * 205.00331 * 16 14 13 18 18 C 1.50710 * 109.46936 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99784 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99635 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99493 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00143 * 0.02562 * 21 20 18 23 23 C 1.38946 * 119.99772 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99988 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00135 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46941 * 89.99944 * 25 23 21 27 27 H 1.48495 * 109.47174 * 210.00449 * 25 23 21 28 28 H 1.48505 * 109.46888 * 330.00146 * 25 23 21 29 29 C 1.47422 * 125.64576 * 179.71278 * 11 9 8 30 30 H 1.09000 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46647 * 299.99974 * 1 2 3 32 32 H 1.08993 * 109.47233 * 60.00030 * 1 2 3 33 33 H 1.08996 * 109.46790 * 239.99618 * 2 1 3 34 34 H 1.09000 * 109.46925 * 120.00114 * 2 1 3 35 35 H 1.07998 * 125.56819 * 179.69244 * 6 4 3 36 36 H 1.07997 * 126.83600 * 179.97438 * 7 6 4 37 37 H 1.09000 * 109.88272 * 300.44196 * 12 11 9 38 38 H 1.09009 * 109.88271 * 61.60210 * 12 11 9 39 39 H 1.09003 * 110.72524 * 140.55669 * 13 12 11 40 40 H 1.09007 * 110.72064 * 263.82858 * 13 12 11 41 41 H 1.00901 * 110.99834 * 81.04744 * 16 14 13 42 42 H 1.08999 * 109.46896 * 299.99802 * 17 16 14 43 43 H 1.08997 * 109.47639 * 60.00186 * 17 16 14 44 44 H 0.97000 * 120.00153 * 359.97438 * 20 18 17 45 45 H 0.97004 * 120.00033 * 179.97438 * 24 23 21 46 46 H 1.08996 * 110.37059 * 274.75033 * 29 11 9 47 47 H 1.09001 * 110.36609 * 37.07329 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3820 2.1327 -1.0883 5 1 2.3473 1.8041 -2.0003 6 6 2.7979 3.3802 -0.7242 7 6 2.7159 3.4927 0.6133 8 6 2.2079 2.2073 1.1049 9 6 1.9461 1.8366 2.5059 10 8 1.5275 0.7263 2.7732 11 7 2.1754 2.7258 3.4925 12 6 2.6832 4.0937 3.3122 13 6 2.8095 4.7241 4.7150 14 6 2.9029 3.4860 5.6454 15 1 3.9220 3.1008 5.6820 16 7 2.4140 3.8025 6.9939 17 6 3.0129 2.9089 7.9943 18 6 2.4882 3.2627 9.3621 19 8 1.6940 4.1702 9.4909 20 7 2.9017 2.5705 10.4421 21 6 2.4248 2.8927 11.6865 22 1 1.7175 3.7008 11.8012 23 6 2.8514 2.1795 12.8000 24 7 2.3939 2.4879 13.9927 25 14 4.0741 0.7813 12.6016 26 1 5.4561 1.3116 12.7206 27 1 3.8407 -0.2343 13.6595 28 1 3.8975 0.1550 11.2666 29 6 1.9523 2.4901 4.9305 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.1379 4.1511 -1.3999 36 1 2.9731 4.3571 1.2074 37 1 3.6598 4.0658 2.8290 38 1 1.9844 4.6718 2.7074 39 1 3.7135 5.3290 4.7861 40 1 1.9270 5.3185 4.9516 41 1 1.4064 3.7638 7.0316 42 1 2.7524 1.8764 7.7614 43 1 4.0969 3.0221 7.9801 44 1 3.5366 1.8444 10.3390 45 1 2.6915 1.9898 14.7701 46 1 0.9148 2.6977 5.1926 47 1 2.2123 1.4643 5.1916 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182266714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:28 Heat of formation + Delta-G solvation = -41.287268 kcal Electronic energy + Delta-G solvation = -28104.931117 eV Core-core repulsion = 24094.405694 eV Total energy + Delta-G solvation = -4010.525422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25959 -40.75960 -40.17892 -38.59721 -36.24105 -35.61398 -34.49760 -33.74638 -32.43875 -31.49612 -29.72449 -29.22581 -27.85651 -25.85743 -24.80590 -23.97196 -22.52823 -21.94879 -21.51407 -21.27264 -20.30790 -19.48353 -18.51600 -17.80586 -17.46331 -17.10583 -16.92604 -16.56904 -16.10238 -15.83388 -15.57636 -15.20871 -15.09960 -14.98238 -14.73793 -14.64689 -14.42854 -14.23712 -14.17152 -13.85867 -13.66965 -13.46057 -13.29275 -13.21579 -13.03913 -12.92797 -12.46484 -12.41290 -12.35016 -12.10977 -11.97317 -11.87082 -11.68457 -11.51292 -10.90302 -10.44084 -10.24723 -9.83328 -9.65841 -9.37676 -9.06583 -8.41149 -6.01924 0.74168 1.30872 1.35681 1.44486 1.58582 1.93321 1.96862 2.23042 2.42588 2.54534 2.73463 3.14984 3.30101 3.60111 3.74240 3.80026 4.01963 4.04841 4.11332 4.16364 4.30350 4.31181 4.39182 4.39999 4.45039 4.52434 4.53899 4.65814 4.67653 4.79659 4.81805 4.88149 5.00455 5.03186 5.17097 5.22442 5.28061 5.29064 5.37615 5.53215 5.82530 5.90270 6.01895 6.03362 6.28514 6.58194 6.59388 6.69550 6.87951 7.27096 7.39562 7.95694 8.76372 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002036 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.168218 B =13749.493212 C =14447.438729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C 0.101 3.899 4 N -0.537 5.537 5 H 0.432 0.568 6 C -0.003 4.003 7 C -0.195 4.195 8 C -0.263 4.263 9 C 0.592 3.408 10 O -0.592 6.592 11 N -0.613 5.613 12 C 0.103 3.897 13 C -0.116 4.116 14 C 0.083 3.917 15 H 0.107 0.893 16 N -0.664 5.664 17 C 0.059 3.941 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.255 1.255 27 H -0.276 1.276 28 H -0.233 1.233 29 C 0.079 3.921 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.208 0.792 36 H 0.169 0.831 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.058 0.942 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -2.225 -37.905 38.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C -0.019 4.019 4 N -0.134 5.134 5 H 0.272 0.728 6 C -0.130 4.130 7 C -0.218 4.218 8 C -0.273 4.273 9 C 0.385 3.615 10 O -0.475 6.475 11 N -0.346 5.346 12 C -0.019 4.019 13 C -0.154 4.154 14 C -0.028 4.028 15 H 0.125 0.875 16 N -0.295 5.295 17 C -0.074 4.074 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.157 1.157 29 C -0.046 4.046 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.224 0.776 36 H 0.186 0.814 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.166 0.834 42 H 0.090 0.910 43 H 0.138 0.862 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.033 -1.753 -37.544 38.066 hybrid contribution -0.401 -1.600 0.543 1.737 sum 5.631 -3.353 -37.001 37.577 Atomic orbital electron populations 1.21597 0.94092 1.02399 1.01202 1.20243 0.96617 0.89124 1.03926 1.20386 1.00179 0.94982 0.86357 1.41634 1.50787 1.12032 1.08911 0.72819 1.22389 1.05780 0.88343 0.96535 1.22792 1.06720 0.97302 0.94955 1.20094 1.18009 0.98265 0.90929 1.17574 0.76358 0.82821 0.84735 1.90715 1.49379 1.22717 1.84691 1.48170 1.65304 1.15219 1.05862 1.22543 1.00329 0.80887 0.98104 1.22698 1.04639 0.96638 0.91462 1.22892 0.98488 0.94653 0.86737 0.87478 1.60207 1.13297 1.53409 1.02554 1.21736 1.01732 0.96019 0.87876 1.20936 0.84359 0.83949 0.87049 1.90545 1.38623 1.33669 1.86905 1.42040 1.42382 1.32780 1.06079 1.19010 1.25521 1.17601 0.83591 0.92562 1.26117 1.00149 1.01365 0.93812 1.69804 1.45318 1.42750 0.99549 0.85369 0.78517 0.77581 0.80088 1.17954 1.20080 1.15683 1.23016 0.99662 1.00713 0.81193 0.91178 0.94909 0.91725 0.88565 0.90710 0.77556 0.81408 0.88981 0.89774 0.87640 0.90509 0.83376 0.90969 0.86170 0.77483 0.91148 0.92369 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.90 71.98 0.71 -1.48 16 2 C -0.06 -0.97 5.79 29.85 0.17 -0.80 16 3 C 0.10 1.68 6.43 41.78 0.27 1.95 16 4 N -0.54 -4.75 5.90 -182.73 -1.08 -5.82 16 5 H 0.43 0.77 8.96 -92.71 -0.83 -0.06 16 6 C 0.00 -0.02 11.89 83.11 0.99 0.96 16 7 C -0.19 -2.66 9.39 23.62 0.22 -2.43 16 8 C -0.26 -5.49 6.23 -19.04 -0.12 -5.61 16 9 C 0.59 16.07 7.84 86.62 0.68 16.75 16 10 O -0.59 -20.08 15.01 -4.12 -0.06 -20.14 16 11 N -0.61 -14.07 3.32 -815.40 -2.71 -16.78 16 12 C 0.10 1.57 4.99 86.73 0.43 2.00 16 13 C -0.12 -1.91 6.64 31.78 0.21 -1.70 16 14 C 0.08 1.76 3.39 46.38 0.16 1.92 16 15 H 0.11 2.01 7.83 -2.38 -0.02 1.99 16 16 N -0.66 -19.01 6.04 -488.01 -2.95 -21.96 16 17 C 0.06 1.79 6.03 85.56 0.52 2.31 16 18 C 0.45 20.40 7.82 87.66 0.69 21.09 16 19 O -0.61 -34.12 15.78 -3.05 -0.05 -34.17 16 20 N -0.59 -28.21 5.09 -306.98 -1.56 -29.77 16 21 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 22 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.93 -56.86 13.96 21.66 0.30 -56.56 16 25 Si 0.96 39.42 27.74 68.60 1.90 41.32 16 26 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 27 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 29 C 0.08 1.93 6.51 86.93 0.57 2.49 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.03 0.74 7.96 -2.38 -0.02 0.72 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 1.65 6.75 -2.39 -0.02 1.64 16 35 H 0.21 0.05 8.06 -2.91 -0.02 0.02 16 36 H 0.17 1.65 4.79 -2.91 -0.01 1.64 16 37 H 0.09 1.08 6.84 -2.39 -0.02 1.06 16 38 H 0.08 1.10 7.01 -2.38 -0.02 1.09 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.35 10.91 7.89 -89.69 -0.71 10.21 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.12 3.01 8.09 -2.39 -0.02 2.99 16 44 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 45 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 47 H 0.06 1.69 8.03 -2.39 -0.02 1.67 16 Total: -1.00 -86.71 382.35 -0.49 -87.20 By element: Atomic # 1 Polarization: 39.33 SS G_CDS: -1.10 Total: 38.23 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.81 Total: 18.45 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -8.00 Total: -130.89 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.11 Total: -54.31 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.90 Total: 41.32 kcal Total: -86.71 -0.49 -87.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182266714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.915 kcal (2) G-P(sol) polarization free energy of solvation -86.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds