Wall clock time and date at job start Tue Mar 31 2020 18:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29947 * 126.29069 * 2 1 4 4 O 1.21303 * 110.25028 * 180.02562 * 3 2 1 5 5 C 1.33640 * 109.81142 * 359.97438 * 4 3 2 6 6 C 1.50706 * 126.55159 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47238 * 270.02918 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00218 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00208 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00107 * 180.02562 * 10 8 7 12 12 H 1.08994 * 112.88710 * 25.33000 * 11 10 8 13 13 C 1.53953 * 113.65980 * 253.98629 * 11 10 8 14 14 C 1.53954 * 87.29343 * 270.26398 * 13 11 10 15 15 H 1.09004 * 113.65985 * 220.79716 * 14 13 11 16 16 N 1.46497 * 113.66598 * 89.83313 * 14 13 11 17 17 C 1.36937 * 120.00608 * 104.50220 * 16 14 13 18 18 H 1.08000 * 119.99506 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00342 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99643 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00049 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47218 * 89.99695 * 21 19 17 23 23 H 1.48503 * 109.47010 * 209.99757 * 21 19 17 24 24 H 1.48502 * 109.46798 * 329.99451 * 21 19 17 25 25 C 1.52914 * 113.66349 * 156.68018 * 11 10 8 26 26 C 1.52908 * 121.13691 * 323.84633 * 25 11 10 27 27 C 1.53953 * 86.78299 * 209.37818 * 26 25 11 28 28 C 1.52908 * 121.13922 * 215.28763 * 25 11 10 29 29 N 1.31132 * 106.89897 * 0.22818 * 5 4 3 30 30 H 1.09003 * 109.47178 * 89.97373 * 1 2 3 31 31 H 1.09000 * 109.47387 * 209.97443 * 1 2 3 32 32 H 1.09004 * 109.47020 * 329.97449 * 1 2 3 33 33 H 1.09001 * 109.46953 * 30.02530 * 6 5 4 34 34 H 1.09000 * 109.47318 * 150.02128 * 6 5 4 35 35 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 36 36 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 37 37 H 0.97006 * 119.99798 * 359.97438 * 10 8 7 38 38 H 1.08999 * 113.57963 * 24.86009 * 13 11 10 39 39 H 1.08996 * 113.57787 * 155.66395 * 13 11 10 40 40 H 0.97010 * 119.99551 * 284.50528 * 16 14 13 41 41 H 0.97006 * 120.00058 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.66612 * 323.85052 * 26 25 11 43 43 H 1.09006 * 113.66056 * 94.90925 * 26 25 11 44 44 H 1.09000 * 113.58009 * 270.13493 * 27 26 25 45 45 H 1.08998 * 113.58209 * 139.34142 * 27 26 25 46 46 H 1.09003 * 113.66109 * 265.09762 * 28 25 11 47 47 H 1.09005 * 113.66327 * 36.14586 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 -0.0005 5 6 3.5298 -0.6213 -0.0003 6 6 4.7969 -1.4372 -0.0014 7 6 5.2247 -1.7130 -1.4442 8 6 6.4920 -2.5284 -1.4451 9 8 7.0025 -2.8570 -0.3952 10 7 7.0577 -2.8934 -2.6128 11 6 8.2894 -3.6865 -2.6137 12 1 8.4139 -4.2771 -1.7061 13 6 9.5423 -2.8815 -3.0038 14 6 9.2483 -3.2705 -4.4641 15 1 10.1395 -3.5301 -5.0355 16 7 8.3806 -2.3192 -5.1628 17 6 8.9132 -1.4509 -6.0779 18 1 9.9731 -1.4677 -6.2849 19 6 8.0911 -0.5491 -6.7395 20 7 6.7996 -0.5284 -6.4869 21 14 8.8177 0.6348 -7.9884 22 1 8.7966 0.0087 -9.3347 23 1 8.0155 1.8843 -8.0110 24 1 10.2187 0.9527 -7.6122 25 6 8.5042 -4.4851 -3.8999 26 6 7.3266 -5.1113 -4.6478 27 6 8.3146 -6.1930 -5.1211 28 6 9.1545 -5.8687 -3.8723 29 7 2.3029 -1.0842 -0.0047 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 5.5845 -0.8858 0.5120 34 1 4.6209 -2.3823 0.5125 35 1 4.4370 -2.2645 -1.9576 36 1 5.4007 -0.7679 -1.9580 37 1 6.6488 -2.6315 -3.4525 38 1 9.4514 -1.8126 -2.8107 39 1 10.4699 -3.3045 -2.6182 40 1 7.4285 -2.3043 -4.9771 41 1 6.2249 0.1015 -6.9495 42 1 6.5436 -5.4910 -3.9914 43 1 6.9400 -4.4887 -5.4547 44 1 8.8140 -5.9473 -6.0583 45 1 7.8953 -7.1991 -5.1154 46 1 10.2282 -5.8512 -4.0596 47 1 8.8852 -6.4613 -2.9980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203247940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:45 Heat of formation + Delta-G solvation = 82.413080 kcal Electronic energy + Delta-G solvation = -28965.802059 eV Core-core repulsion = 24960.640686 eV Total energy + Delta-G solvation = -4005.161373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.68338 -40.64595 -38.95966 -36.23618 -35.34325 -34.68717 -33.70549 -32.37328 -31.49595 -29.89570 -29.29678 -26.22358 -25.43911 -24.43450 -24.18516 -23.57428 -22.46602 -21.36085 -20.43791 -19.94598 -18.39961 -17.98873 -17.55203 -17.07583 -16.78781 -15.84895 -15.60026 -15.20011 -15.03714 -14.59949 -14.35076 -14.22547 -13.87444 -13.79241 -13.38555 -13.19402 -12.99918 -12.85707 -12.64550 -12.43284 -12.34970 -12.12879 -11.90506 -11.55086 -11.45429 -11.38332 -11.31117 -11.13296 -10.95950 -10.91058 -10.72055 -10.24102 -10.11569 -10.05319 -9.87459 -9.76330 -9.54121 -9.43402 -8.93422 -8.53467 -7.11348 -5.92248 -3.20620 1.01498 2.07671 2.65417 2.82983 3.35175 3.36550 3.42918 3.43649 3.57320 3.91301 4.44389 4.60709 4.73677 4.76549 4.88181 4.95699 4.98720 5.10780 5.13980 5.14437 5.20891 5.28340 5.35383 5.38403 5.47617 5.63508 5.64332 5.71038 5.81733 5.81833 5.86982 5.89424 5.95679 5.97453 6.00039 6.13771 6.24569 6.32596 6.47829 6.59086 6.66309 6.76524 6.91471 7.06714 7.61150 7.83404 8.05162 8.27086 8.46732 9.38396 9.92282 10.26123 11.30446 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009063 B = 0.003338 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.574996 B = 8385.719414 C =10433.291773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.165 3.835 3 N -0.387 5.387 4 O 0.079 5.921 5 C 0.191 3.809 6 C -0.010 4.010 7 C -0.142 4.142 8 C 0.522 3.478 9 O -0.553 6.553 10 N -0.694 5.694 11 C 0.138 3.862 12 H 0.091 0.909 13 C -0.185 4.185 14 C 0.191 3.809 15 H 0.064 0.936 16 N -0.700 5.700 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.135 4.135 28 C -0.106 4.106 29 N -0.483 5.483 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.380 0.620 41 H 0.257 0.743 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.996 -6.236 10.944 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.096 5.096 4 O 0.021 5.979 5 C -0.029 4.029 6 C -0.049 4.049 7 C -0.183 4.183 8 C 0.309 3.691 9 O -0.432 6.432 10 N -0.345 5.345 11 C 0.033 3.967 12 H 0.109 0.891 13 C -0.227 4.227 14 C 0.078 3.922 15 H 0.082 0.918 16 N -0.339 5.339 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.130 4.130 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.145 4.145 29 N -0.217 5.217 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.215 0.785 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.203 -5.809 11.522 14.317 hybrid contribution -0.058 0.913 -1.100 1.431 sum -6.261 -4.895 10.421 13.106 Atomic orbital electron populations 1.20126 0.83016 1.04493 1.04367 1.25916 1.00611 0.83622 1.00639 1.74646 0.89439 1.23983 1.21547 1.85312 1.22274 1.24844 1.65470 1.28855 0.96991 0.82131 0.94916 1.19967 0.87722 0.98851 0.98395 1.21631 0.97074 1.02795 0.96785 1.20198 0.85284 0.79738 0.83926 1.90675 1.64886 1.56395 1.31284 1.45715 1.26195 1.53816 1.08790 1.21632 0.84510 0.92823 0.97754 0.89131 1.24262 0.96375 1.00906 1.01160 1.20938 0.93070 0.87376 0.90770 0.91790 1.42091 1.06430 1.38945 1.46475 1.19255 0.93174 1.10588 1.14223 0.90892 1.24710 0.95502 0.99882 1.00398 1.69611 1.02973 1.39848 1.45733 0.86170 0.78064 0.80486 0.81341 1.21668 1.21757 1.20693 1.23571 0.98564 0.94799 0.96085 1.22577 0.95965 0.97755 1.00124 1.22751 0.98170 0.98264 0.98020 1.22513 0.99321 0.94361 0.98265 1.71915 0.99728 1.29368 1.20720 0.89263 0.89089 0.89614 0.87054 0.86394 0.87889 0.87472 0.75322 0.90902 0.90511 0.78509 0.93347 0.90913 0.90241 0.90088 0.92179 0.91355 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.00 0.38 -0.12 16 2 C 0.16 2.06 8.22 -156.37 -1.28 0.77 16 3 N -0.39 -5.41 12.16 30.90 0.38 -5.03 16 4 O 0.08 1.07 11.31 18.11 0.20 1.27 16 5 C 0.19 2.36 7.77 -13.05 -0.10 2.26 16 6 C -0.01 -0.11 5.13 -27.88 -0.14 -0.25 16 7 C -0.14 -1.69 5.68 -27.89 -0.16 -1.85 16 8 C 0.52 7.78 7.83 -10.99 -0.09 7.69 16 9 O -0.55 -9.45 15.60 5.56 0.09 -9.36 16 10 N -0.69 -10.89 4.93 -53.37 -0.26 -11.15 16 11 C 0.14 2.17 4.09 -67.48 -0.28 1.90 16 12 H 0.09 1.44 7.50 -51.93 -0.39 1.05 16 13 C -0.18 -3.13 7.68 -25.74 -0.20 -3.33 16 14 C 0.19 3.49 4.36 -67.33 -0.29 3.20 16 15 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 16 N -0.70 -15.64 4.78 -52.84 -0.25 -15.89 16 17 C -0.24 -6.20 9.98 -15.06 -0.15 -6.35 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -25.91 13.06 55.49 0.72 -25.18 16 21 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.13 -1.93 0.78 -154.55 -0.12 -2.05 16 26 C -0.13 -1.87 7.22 -26.28 -0.19 -2.06 16 27 C -0.13 -1.75 8.08 -25.75 -0.21 -1.96 16 28 C -0.11 -1.34 7.84 -26.29 -0.21 -1.55 16 29 N -0.48 -6.35 11.55 -9.87 -0.11 -6.47 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.12 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.41 6.82 6.20 -40.82 -0.25 6.57 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.38 8.67 5.12 -40.82 -0.21 8.47 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -30.38 389.44 -8.65 -39.03 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -7.12 Total: 14.58 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.13 Total: -4.04 kcal Atomic # 7 Polarization: -64.20 SS G_CDS: 0.47 Total: -63.73 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.29 Total: -8.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.38 -8.65 -39.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203247940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.446 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds