Wall clock time and date at job start Tue Mar 31 2020 18:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29950 * 126.28845 * 2 1 4 4 O 1.21301 * 110.25146 * 179.72495 * 3 2 1 5 5 C 1.33642 * 109.80798 * 0.46289 * 4 3 2 6 6 C 1.50704 * 126.55021 * 179.79791 * 5 4 3 7 7 N 1.46497 * 109.47349 * 269.69303 * 6 5 4 8 8 C 1.46914 * 124.37312 * 90.00064 * 7 6 5 9 9 C 1.54767 * 105.53080 * 163.22485 * 8 7 6 10 10 C 1.53361 * 101.43957 * 24.29778 * 9 8 7 11 11 C 1.53309 * 111.50036 * 98.52876 * 10 9 8 12 12 C 1.54280 * 104.79979 * 140.99543 * 11 10 9 13 13 N 1.48014 * 107.02311 * 2.00459 * 12 11 10 14 14 C 1.46902 * 111.00013 * 214.39650 * 13 12 11 15 15 C 1.53000 * 109.47106 * 175.71395 * 14 13 12 16 16 C 1.50704 * 109.46915 * 174.86665 * 15 14 13 17 17 H 1.07999 * 120.00092 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46992 * 59.99745 * 20 18 16 22 22 H 1.48501 * 109.47211 * 300.00077 * 20 18 16 23 23 H 1.48503 * 109.47559 * 179.97438 * 20 18 16 24 24 C 1.48769 * 106.00968 * 335.02581 * 13 12 11 25 25 C 1.34829 * 124.37832 * 270.00014 * 7 6 5 26 26 O 1.21283 * 125.18932 * 1.19797 * 25 7 6 27 27 N 1.31134 * 106.90139 * 359.54520 * 5 4 3 28 28 H 1.08996 * 109.47363 * 269.97804 * 1 2 3 29 29 H 1.09000 * 109.46935 * 29.97830 * 1 2 3 30 30 H 1.09002 * 109.47101 * 149.97461 * 1 2 3 31 31 H 1.09004 * 109.46889 * 149.69533 * 6 5 4 32 32 H 1.09003 * 109.46971 * 29.69691 * 6 5 4 33 33 H 1.09000 * 110.23347 * 44.20826 * 8 7 6 34 34 H 1.08998 * 110.23361 * 282.23643 * 8 7 6 35 35 H 1.08999 * 111.02803 * 266.25632 * 9 8 7 36 36 H 1.09005 * 111.06044 * 142.34884 * 9 8 7 37 37 H 1.09002 * 110.37001 * 22.16753 * 11 10 9 38 38 H 1.08997 * 110.37639 * 259.83270 * 11 10 9 39 39 H 1.09003 * 109.92651 * 242.66533 * 12 11 10 40 40 H 1.08999 * 110.09491 * 121.44270 * 12 11 10 41 41 H 1.09003 * 109.46686 * 55.71395 * 14 13 12 42 42 H 1.09003 * 109.47484 * 295.71866 * 14 13 12 43 43 H 1.08991 * 109.47303 * 54.86817 * 15 14 13 44 44 H 1.09002 * 109.47002 * 294.86357 * 15 14 13 45 45 H 0.96999 * 120.00062 * 0.02562 * 19 18 16 46 46 H 1.09000 * 110.68497 * 156.19955 * 24 13 12 47 47 H 1.08996 * 110.68669 * 279.38468 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0055 5 6 3.5298 -0.6212 -0.0006 6 6 4.7969 -1.4370 -0.0011 7 7 5.2071 -1.7012 -1.3825 8 6 6.0958 -0.8312 -2.1646 9 6 6.5813 -1.6957 -3.3530 10 6 5.4531 -2.7293 -3.4581 11 6 4.4493 -2.3558 -4.5550 12 6 4.0772 -3.6964 -5.2217 13 7 4.8032 -4.7597 -4.4916 14 6 5.2049 -5.8420 -5.4000 15 6 6.0424 -6.8672 -4.6330 16 6 6.3482 -8.0386 -5.5305 17 1 5.9814 -8.0508 -6.5463 18 6 7.0952 -9.0952 -5.0546 19 7 7.5414 -9.0805 -3.8175 20 14 7.4737 -10.5474 -6.1668 21 1 8.2324 -10.0773 -7.3537 22 1 6.2033 -11.1766 -6.6089 23 1 8.2867 -11.5425 -5.4225 24 6 5.9928 -4.1028 -3.8861 25 6 4.8178 -2.7741 -2.1003 26 8 4.0677 -3.6426 -1.7081 27 7 2.3030 -1.0841 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.6207 -2.3822 0.5126 32 1 5.5844 -0.8856 0.5126 33 1 6.9439 -0.5149 -1.5572 34 1 5.5477 0.0374 -2.5294 35 1 7.5323 -2.1765 -3.1241 36 1 6.6546 -1.1026 -4.2646 37 1 4.9117 -1.6866 -5.2806 38 1 3.5655 -1.8909 -4.1182 39 1 4.3834 -3.6886 -6.2678 40 1 3.0025 -3.8644 -5.1507 41 1 5.7954 -5.4293 -6.2181 42 1 4.3157 -6.3273 -5.8026 43 1 5.4857 -7.2126 -3.7620 44 1 6.9747 -6.4050 -4.3085 45 1 7.3446 -8.3266 -3.2398 46 1 6.3443 -4.6649 -3.0209 47 1 6.7879 -3.9914 -4.6232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:08 Heat of formation + Delta-G solvation = 44.753309 kcal Electronic energy + Delta-G solvation = -29349.979926 eV Core-core repulsion = 25343.185503 eV Total energy + Delta-G solvation = -4006.794423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.87148 -41.22080 -38.04416 -36.53801 -36.34784 -34.71724 -33.59807 -32.35908 -30.73070 -29.53346 -28.55620 -28.02278 -27.66581 -24.50986 -23.97472 -23.44843 -22.30144 -21.63853 -21.04973 -20.17761 -19.08306 -18.46573 -17.81686 -16.90246 -16.60923 -16.39756 -15.99259 -15.14104 -15.08875 -14.69238 -14.34548 -14.01728 -14.00465 -13.90829 -13.67430 -13.37600 -13.18586 -13.02435 -12.91299 -12.69291 -12.54253 -12.42016 -12.24374 -12.19236 -11.68480 -11.59530 -11.35474 -11.28117 -11.10962 -10.88871 -10.77492 -10.73141 -10.31165 -10.10643 -10.01454 -9.64821 -9.58789 -9.18970 -8.53166 -8.27618 -7.82475 -6.31337 -3.99821 0.74537 1.87666 2.29090 2.64076 2.81966 3.34936 3.46262 3.49088 3.67514 3.71576 4.01929 4.17527 4.41026 4.44660 4.56733 4.59150 4.66756 4.78888 4.94295 4.96331 5.03618 5.05859 5.09933 5.16585 5.25600 5.28348 5.46489 5.50231 5.53027 5.57493 5.64736 5.72674 5.73879 5.85433 5.88755 6.07251 6.11053 6.17029 6.31200 6.33682 6.78808 6.83313 7.32029 7.33700 7.56368 7.78167 7.86516 8.12830 8.28339 8.51341 8.93646 9.72498 11.09764 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002468 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.297798 B =11340.779452 C =11488.618790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.160 3.840 6 C 0.224 3.776 7 N -0.629 5.629 8 C 0.105 3.895 9 C -0.122 4.122 10 C -0.101 4.101 11 C -0.102 4.102 12 C 0.037 3.963 13 N -0.509 5.509 14 C 0.062 3.938 15 C 0.014 3.986 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.015 3.985 19 N -0.912 5.912 20 Si 1.069 2.931 21 H -0.289 1.289 22 H -0.288 1.288 23 H -0.282 1.282 24 C 0.069 3.931 25 C 0.538 3.462 26 O -0.473 6.473 27 N -0.457 5.457 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.021 0.979 42 H 0.066 0.934 43 H 0.018 0.982 44 H 0.005 0.995 45 H 0.269 0.731 46 H 0.085 0.915 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 24.663 6.164 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.095 5.095 4 O 0.019 5.981 5 C -0.063 4.063 6 C 0.098 3.902 7 N -0.368 5.368 8 C -0.018 4.018 9 C -0.160 4.160 10 C -0.105 4.105 11 C -0.141 4.141 12 C -0.092 4.092 13 N -0.233 5.233 14 C -0.065 4.065 15 C -0.023 4.023 16 C -0.641 4.641 17 H 0.065 0.935 18 C -0.189 4.189 19 N -0.549 5.549 20 Si 0.897 3.103 21 H -0.216 1.216 22 H -0.214 1.214 23 H -0.208 1.208 24 C -0.060 4.060 25 C 0.324 3.676 26 O -0.342 6.342 27 N -0.191 5.191 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.023 0.977 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.886 22.946 6.768 24.637 hybrid contribution -0.236 1.974 -0.635 2.087 sum -6.123 24.920 6.134 26.384 Atomic orbital electron populations 1.20154 0.82885 1.04788 1.04339 1.26015 1.00768 0.83432 1.00471 1.74617 0.89490 1.23991 1.21429 1.85279 1.22402 1.24926 1.65467 1.29642 0.97873 0.82127 0.96686 1.19693 0.87176 0.98866 0.84448 1.48502 1.50234 1.25381 1.12644 1.22210 0.93397 0.93090 0.93100 1.22603 0.98353 0.96489 0.98521 1.21447 0.96703 0.98289 0.94074 1.22188 0.97985 0.98125 0.95777 1.22907 1.00233 0.90057 0.95977 1.64946 1.19476 1.08003 1.30838 1.22372 0.99015 0.91814 0.93312 1.19219 0.93614 0.93234 0.96240 1.22003 1.37350 1.05228 0.99553 0.93466 1.25825 0.93878 1.00900 0.98267 1.70764 1.43978 1.33622 1.06493 0.83547 0.76393 0.75620 0.74696 1.21554 1.21443 1.20776 1.22864 0.92976 0.90246 0.99883 1.20333 0.80402 0.80457 0.86390 1.90817 1.33169 1.36355 1.73874 1.72037 0.99759 1.29088 1.18230 0.89246 0.89554 0.88838 0.85223 0.86328 0.89661 0.91270 0.89063 0.88828 0.90361 0.91431 0.93843 0.90692 0.96040 0.91600 0.96377 0.97688 0.92011 0.89633 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.17 1.94 8.22 -156.37 -1.28 0.65 16 3 N -0.39 -4.61 12.16 30.90 0.38 -4.24 16 4 O 0.08 0.84 11.31 18.10 0.20 1.04 16 5 C 0.16 1.72 8.10 -13.05 -0.11 1.62 16 6 C 0.22 1.87 6.56 -5.19 -0.03 1.84 16 7 N -0.63 -6.40 2.93 -173.92 -0.51 -6.91 16 8 C 0.10 0.72 7.37 -2.89 -0.02 0.70 16 9 C -0.12 -0.99 6.26 -25.61 -0.16 -1.16 16 10 C -0.10 -1.29 0.73 -155.32 -0.11 -1.40 16 11 C -0.10 -1.25 6.16 -25.90 -0.16 -1.41 16 12 C 0.04 0.56 6.73 -2.54 -0.02 0.55 16 13 N -0.51 -9.79 5.36 -230.79 -1.24 -11.03 16 14 C 0.06 1.36 4.77 -3.82 -0.02 1.35 16 15 C 0.01 0.38 3.97 -27.88 -0.11 0.27 16 16 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 17 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 18 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 19 N -0.91 -28.58 13.65 55.43 0.76 -27.83 16 20 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.07 1.15 4.10 -2.44 -0.01 1.14 16 25 C 0.54 7.82 6.68 -11.31 -0.08 7.74 16 26 O -0.47 -9.17 17.50 5.56 0.10 -9.07 16 27 N -0.46 -6.05 11.55 -9.86 -0.11 -6.17 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.13 1.20 7.96 -51.93 -0.41 0.79 16 32 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.72 7.95 -51.93 -0.41 0.30 16 36 H 0.09 0.59 7.45 -51.93 -0.39 0.21 16 37 H 0.08 0.75 7.44 -51.93 -0.39 0.36 16 38 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 39 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.02 0.46 7.97 -51.93 -0.41 0.04 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 44 H 0.00 0.13 7.07 -51.93 -0.37 -0.23 16 45 H 0.27 8.46 7.22 -40.82 -0.29 8.16 16 46 H 0.09 1.62 7.71 -51.93 -0.40 1.22 16 47 H 0.05 0.87 7.92 -51.93 -0.41 0.46 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -37.84 385.51 -9.13 -46.97 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -7.29 Total: -3.43 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.14 Total: -5.82 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.73 Total: -56.17 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.30 Total: -8.03 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.84 -9.13 -46.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.724 kcal (2) G-P(sol) polarization free energy of solvation -37.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds