Wall clock time and date at job start Tue Mar 31 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29950 * 126.28845 * 2 1 4 4 O 1.21301 * 110.25146 * 179.72495 * 3 2 1 5 5 C 1.33642 * 109.80798 * 0.46289 * 4 3 2 6 6 C 1.50704 * 126.55021 * 179.79791 * 5 4 3 7 7 N 1.46497 * 109.47349 * 269.69303 * 6 5 4 8 8 C 1.46914 * 124.37312 * 90.00064 * 7 6 5 9 9 C 1.54767 * 105.53080 * 163.22485 * 8 7 6 10 10 C 1.53361 * 101.43957 * 24.29778 * 9 8 7 11 11 C 1.53309 * 111.50036 * 98.52876 * 10 9 8 12 12 C 1.54280 * 104.79979 * 140.99543 * 11 10 9 13 13 N 1.48014 * 107.02311 * 2.00459 * 12 11 10 14 14 C 1.46902 * 111.00013 * 214.39650 * 13 12 11 15 15 C 1.53000 * 109.47106 * 175.71395 * 14 13 12 16 16 C 1.50704 * 109.46915 * 174.86665 * 15 14 13 17 17 H 1.07999 * 120.00092 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99956 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46992 * 59.99745 * 20 18 16 22 22 H 1.48501 * 109.47211 * 300.00077 * 20 18 16 23 23 H 1.48503 * 109.47559 * 179.97438 * 20 18 16 24 24 C 1.48769 * 106.00968 * 335.02581 * 13 12 11 25 25 C 1.34829 * 124.37832 * 270.00014 * 7 6 5 26 26 O 1.21283 * 125.18932 * 1.19797 * 25 7 6 27 27 N 1.31134 * 106.90139 * 359.54520 * 5 4 3 28 28 H 1.08996 * 109.47363 * 269.97804 * 1 2 3 29 29 H 1.09000 * 109.46935 * 29.97830 * 1 2 3 30 30 H 1.09002 * 109.47101 * 149.97461 * 1 2 3 31 31 H 1.09004 * 109.46889 * 149.69533 * 6 5 4 32 32 H 1.09003 * 109.46971 * 29.69691 * 6 5 4 33 33 H 1.09000 * 110.23347 * 44.20826 * 8 7 6 34 34 H 1.08998 * 110.23361 * 282.23643 * 8 7 6 35 35 H 1.08999 * 111.02803 * 266.25632 * 9 8 7 36 36 H 1.09005 * 111.06044 * 142.34884 * 9 8 7 37 37 H 1.09002 * 110.37001 * 22.16753 * 11 10 9 38 38 H 1.08997 * 110.37639 * 259.83270 * 11 10 9 39 39 H 1.09003 * 109.92651 * 242.66533 * 12 11 10 40 40 H 1.08999 * 110.09491 * 121.44270 * 12 11 10 41 41 H 1.09003 * 109.46686 * 55.71395 * 14 13 12 42 42 H 1.09003 * 109.47484 * 295.71866 * 14 13 12 43 43 H 1.08991 * 109.47303 * 54.86817 * 15 14 13 44 44 H 1.09002 * 109.47002 * 294.86357 * 15 14 13 45 45 H 0.96999 * 120.00062 * 0.02562 * 19 18 16 46 46 H 1.09000 * 110.68497 * 156.19955 * 24 13 12 47 47 H 1.08996 * 110.68669 * 279.38468 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0055 5 6 3.5298 -0.6212 -0.0006 6 6 4.7969 -1.4370 -0.0011 7 7 5.2071 -1.7012 -1.3825 8 6 6.0958 -0.8312 -2.1646 9 6 6.5813 -1.6957 -3.3530 10 6 5.4531 -2.7293 -3.4581 11 6 4.4493 -2.3558 -4.5550 12 6 4.0772 -3.6964 -5.2217 13 7 4.8032 -4.7597 -4.4916 14 6 5.2049 -5.8420 -5.4000 15 6 6.0424 -6.8672 -4.6330 16 6 6.3482 -8.0386 -5.5305 17 1 5.9814 -8.0508 -6.5463 18 6 7.0952 -9.0952 -5.0546 19 7 7.5414 -9.0805 -3.8175 20 14 7.4737 -10.5474 -6.1668 21 1 8.2324 -10.0773 -7.3537 22 1 6.2033 -11.1766 -6.6089 23 1 8.2867 -11.5425 -5.4225 24 6 5.9928 -4.1028 -3.8861 25 6 4.8178 -2.7741 -2.1003 26 8 4.0677 -3.6426 -1.7081 27 7 2.3030 -1.0841 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 4.6207 -2.3822 0.5126 32 1 5.5844 -0.8856 0.5126 33 1 6.9439 -0.5149 -1.5572 34 1 5.5477 0.0374 -2.5294 35 1 7.5323 -2.1765 -3.1241 36 1 6.6546 -1.1026 -4.2646 37 1 4.9117 -1.6866 -5.2806 38 1 3.5655 -1.8909 -4.1182 39 1 4.3834 -3.6886 -6.2678 40 1 3.0025 -3.8644 -5.1507 41 1 5.7954 -5.4293 -6.2181 42 1 4.3157 -6.3273 -5.8026 43 1 5.4857 -7.2126 -3.7620 44 1 6.9747 -6.4050 -4.3085 45 1 7.3446 -8.3266 -3.2398 46 1 6.3443 -4.6649 -3.0209 47 1 6.7879 -3.9914 -4.6232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:07 Heat of formation + Delta-G solvation = 15.412310 kcal Electronic energy + Delta-G solvation = -29351.252247 eV Core-core repulsion = 25343.185503 eV Total energy + Delta-G solvation = -4008.066744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.72523 -42.22945 -39.32460 -37.60132 -37.21590 -36.17255 -35.11344 -33.65238 -32.01927 -30.27009 -29.83582 -29.45787 -28.47786 -26.18445 -25.00959 -24.75795 -23.17045 -23.05828 -22.00383 -21.74941 -20.13797 -19.33852 -18.89585 -18.66804 -17.67213 -17.39155 -16.99752 -16.45188 -16.27237 -15.78834 -15.63877 -15.30781 -15.14319 -14.93604 -14.71214 -14.55525 -14.42220 -14.32700 -13.99643 -13.72784 -13.64681 -13.46761 -13.31287 -13.16415 -13.01306 -12.81401 -12.62226 -12.53412 -12.50798 -12.16389 -11.97761 -11.96107 -11.87706 -11.66521 -11.62421 -11.14068 -10.74307 -10.67523 -10.55802 -10.02002 -9.30434 -8.71462 -6.41780 -0.08554 1.02306 1.32801 1.51764 1.61303 1.73580 1.80611 2.00942 2.55848 2.62628 2.93727 2.97291 3.14692 3.23922 3.38723 3.49669 3.82251 3.82788 3.97774 4.07935 4.12080 4.26915 4.29572 4.35630 4.43165 4.44497 4.47302 4.48232 4.55467 4.60381 4.63353 4.71681 4.77621 4.83064 4.84248 4.85221 4.99718 5.01087 5.06535 5.15973 5.22754 5.36347 5.41114 5.83971 5.90717 6.01915 6.13565 6.18219 6.54252 7.03682 7.09484 7.41616 8.69228 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002468 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.297798 B =11340.779452 C =11488.618790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.155 3.845 3 N -0.401 5.401 4 O 0.087 5.913 5 C 0.168 3.832 6 C 0.220 3.780 7 N -0.621 5.621 8 C 0.102 3.898 9 C -0.113 4.113 10 C -0.099 4.099 11 C -0.091 4.091 12 C 0.033 3.967 13 N -0.538 5.538 14 C 0.080 3.920 15 C 0.023 3.977 16 C -0.621 4.621 17 H 0.053 0.947 18 C -0.040 4.040 19 N -0.936 5.936 20 Si 1.121 2.879 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.283 1.283 24 C 0.070 3.930 25 C 0.526 3.474 26 O -0.540 6.540 27 N -0.500 5.500 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.173 0.827 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.055 0.945 43 H -0.023 1.023 44 H -0.007 1.007 45 H 0.253 0.747 46 H 0.048 0.952 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 27.372 4.808 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 N -0.109 5.109 4 O 0.028 5.972 5 C -0.054 4.054 6 C 0.095 3.905 7 N -0.357 5.357 8 C -0.018 4.018 9 C -0.151 4.151 10 C -0.103 4.103 11 C -0.129 4.129 12 C -0.095 4.095 13 N -0.262 5.262 14 C -0.048 4.048 15 C -0.014 4.014 16 C -0.659 4.659 17 H 0.071 0.929 18 C -0.237 4.237 19 N -0.573 5.573 20 Si 0.941 3.059 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.208 1.208 24 C -0.058 4.058 25 C 0.314 3.686 26 O -0.414 6.414 27 N -0.235 5.235 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.132 0.868 32 H 0.190 0.810 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.074 0.926 43 H -0.004 1.004 44 H 0.011 0.989 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.729 25.747 5.416 26.732 hybrid contribution -0.618 1.166 -0.141 1.327 sum -5.346 26.912 5.275 27.941 Atomic orbital electron populations 1.20321 0.80873 1.05409 1.05575 1.26615 1.02156 0.82952 0.99950 1.74588 0.89898 1.24238 1.22213 1.85251 1.21981 1.24677 1.65246 1.29961 0.97904 0.82222 0.95353 1.20065 0.87847 0.98765 0.83825 1.48561 1.49464 1.24484 1.13171 1.22565 0.94157 0.92359 0.92749 1.22700 0.96413 0.95317 1.00672 1.21450 0.98399 0.97167 0.93303 1.22193 0.97996 0.96688 0.96043 1.22972 0.99145 0.90613 0.96747 1.64782 1.21068 1.09325 1.31050 1.21997 0.97706 0.91904 0.93221 1.19051 0.93279 0.94095 0.94971 1.22441 1.37174 1.06161 1.00115 0.92870 1.27550 0.93258 1.04121 0.98749 1.70908 1.45539 1.33276 1.07540 0.82904 0.77245 0.72193 0.73526 1.18841 1.19594 1.20798 1.22773 0.92494 0.92074 0.98490 1.20756 0.79692 0.80701 0.87439 1.90779 1.36239 1.39069 1.75319 1.72069 1.01232 1.30390 1.19815 0.87645 0.88004 0.89057 0.86759 0.80979 0.85788 0.89481 0.88690 0.85735 0.86308 0.91789 0.92334 0.91761 0.94904 0.92629 1.00433 0.98870 0.93763 0.93366 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.51 71.24 0.75 -0.21 16 2 C 0.16 3.56 8.22 138.46 1.14 4.70 16 3 N -0.40 -9.08 12.16 -60.31 -0.73 -9.81 16 4 O 0.09 1.71 11.31 74.84 0.85 2.55 16 5 C 0.17 3.44 8.10 88.38 0.72 4.16 16 6 C 0.22 3.32 6.56 85.64 0.56 3.88 16 7 N -0.62 -11.44 2.93 -822.50 -2.41 -13.85 16 8 C 0.10 0.95 7.37 86.90 0.64 1.59 16 9 C -0.11 -1.42 6.26 31.32 0.20 -1.23 16 10 C -0.10 -2.41 0.73 -52.71 -0.04 -2.45 16 11 C -0.09 -2.03 6.16 31.13 0.19 -1.84 16 12 C 0.03 1.00 6.73 86.52 0.58 1.58 16 13 N -0.54 -21.46 5.36 -884.09 -4.74 -26.19 16 14 C 0.08 3.61 4.77 86.30 0.41 4.03 16 15 C 0.02 1.31 3.97 29.85 0.12 1.43 16 16 C -0.62 -37.09 9.11 25.60 0.23 -36.86 16 17 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 18 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 19 N -0.94 -60.48 13.65 21.45 0.29 -60.19 16 20 Si 1.12 51.49 29.90 68.60 2.05 53.54 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 C 0.07 2.39 4.10 86.16 0.35 2.75 16 25 C 0.53 15.40 6.68 87.42 0.58 15.98 16 26 O -0.54 -22.26 17.50 -3.04 -0.05 -22.31 16 27 N -0.50 -13.33 11.55 -303.17 -3.50 -16.83 16 28 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 2.15 7.96 -2.38 -0.02 2.13 16 32 H 0.17 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 1.18 7.95 -2.39 -0.02 1.16 16 36 H 0.12 0.87 7.45 -2.38 -0.02 0.85 16 37 H 0.12 1.71 7.44 -2.39 -0.02 1.69 16 38 H 0.06 1.50 7.85 -2.39 -0.02 1.48 16 39 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.03 1.40 7.97 -2.39 -0.02 1.38 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 43 H -0.02 -1.44 8.01 -2.39 -0.02 -1.46 16 44 H -0.01 -0.40 7.07 -2.39 -0.02 -0.42 16 45 H 0.25 16.78 7.22 -92.71 -0.67 16.11 16 46 H 0.05 1.97 7.71 -2.39 -0.02 1.95 16 47 H 0.06 2.00 7.92 -2.39 -0.02 1.98 16 Total: -1.00 -89.29 385.51 -0.27 -89.56 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.07 Total: 7.94 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 6.90 Total: -4.42 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -11.09 Total: -126.88 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.79 Total: -19.76 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.54 kcal Total: -89.29 -0.27 -89.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.977 kcal (2) G-P(sol) polarization free energy of solvation -89.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds