Wall clock time and date at job start Tue Mar 31 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29941 * 126.28744 * 2 1 4 4 O 1.21300 * 110.24994 * 179.84392 * 3 2 1 5 5 C 1.33637 * 109.81377 * 0.42873 * 4 3 2 6 6 C 1.50697 * 126.55410 * 179.71309 * 5 4 3 7 7 N 1.46507 * 109.47418 * 270.02366 * 6 5 4 8 8 C 1.46875 * 124.36885 * 89.99801 * 7 6 5 9 9 C 1.54705 * 105.51920 * 196.83041 * 8 7 6 10 10 C 1.53622 * 101.50789 * 335.47420 * 9 8 7 11 11 C 1.53254 * 111.05092 * 262.69078 * 10 9 8 12 12 C 1.54637 * 104.67488 * 239.01004 * 11 10 9 13 13 N 1.48647 * 104.63414 * 23.68772 * 12 11 10 14 14 C 1.46898 * 111.00185 * 201.49096 * 13 12 11 15 15 C 1.53002 * 109.47092 * 290.12172 * 14 13 12 16 16 C 1.50697 * 109.47195 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99459 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46798 * 89.99848 * 20 18 16 22 22 H 1.48499 * 109.47201 * 209.99937 * 20 18 16 23 23 H 1.48501 * 109.47237 * 330.00107 * 20 18 16 24 24 C 1.48816 * 104.37855 * 321.13838 * 13 12 11 25 25 C 1.34750 * 124.37232 * 269.70529 * 7 6 5 26 26 O 1.21281 * 125.13908 * 358.96843 * 25 7 6 27 27 N 1.31136 * 106.89648 * 359.73810 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.68287 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67885 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68516 * 1 2 3 31 31 H 1.09002 * 109.47152 * 30.02575 * 6 5 4 32 32 H 1.08998 * 109.47085 * 150.02888 * 6 5 4 33 33 H 1.09002 * 110.24116 * 315.83840 * 8 7 6 34 34 H 1.09002 * 110.23937 * 77.81766 * 8 7 6 35 35 H 1.08998 * 111.02171 * 93.53113 * 9 8 7 36 36 H 1.09002 * 111.01939 * 217.41897 * 9 8 7 37 37 H 1.09002 * 110.39635 * 357.81651 * 11 10 9 38 38 H 1.08998 * 110.39568 * 120.21278 * 11 10 9 39 39 H 1.09004 * 110.40002 * 142.46874 * 12 11 10 40 40 H 1.08995 * 110.40904 * 264.89363 * 12 11 10 41 41 H 1.09005 * 109.47258 * 50.12218 * 14 13 12 42 42 H 1.09001 * 109.47192 * 170.11841 * 14 13 12 43 43 H 1.09005 * 109.47106 * 300.00139 * 15 14 13 44 44 H 1.09005 * 109.46889 * 59.99776 * 15 14 13 45 45 H 0.97004 * 119.99674 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.45356 * 279.83149 * 24 13 12 47 47 H 1.09003 * 110.45770 * 157.26678 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0031 5 6 3.5299 -0.6212 -0.0040 6 6 4.7970 -1.4370 -0.0092 7 7 5.2069 -1.6936 -1.3921 8 6 6.0952 -0.8196 -2.1694 9 6 5.8969 -1.2357 -3.6462 10 6 5.4099 -2.6847 -3.4935 11 6 6.5656 -3.6755 -3.6714 12 6 6.1371 -4.5679 -4.8593 13 7 5.1675 -3.7384 -5.6217 14 6 4.2997 -4.5781 -6.4582 15 6 5.1191 -5.1758 -7.6038 16 6 4.2290 -6.0377 -8.4616 17 1 3.1835 -6.1485 -8.2141 18 6 4.7495 -6.6858 -9.5617 19 7 6.0226 -6.5512 -9.8626 20 14 3.6464 -7.7548 -10.6245 21 1 3.0482 -6.9289 -11.7041 22 1 4.4489 -8.8500 -11.2259 23 1 2.5649 -8.3351 -9.7885 24 6 4.3792 -3.0346 -4.5739 25 6 4.8222 -2.7650 -2.1132 26 8 4.1073 -3.6578 -1.7099 27 7 2.3030 -1.0841 -0.0060 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8871 -0.5187 31 1 5.5845 -0.8883 0.5074 32 1 4.6209 -2.3848 0.4994 33 1 5.8131 0.2241 -2.0307 34 1 7.1320 -0.9736 -1.8702 35 1 5.1396 -0.6176 -4.1283 36 1 6.8386 -1.1954 -4.1936 37 1 7.4879 -3.1448 -3.9080 38 1 6.6925 -4.2766 -2.7711 39 1 6.9986 -4.8128 -5.4806 40 1 5.6574 -5.4774 -4.4978 41 1 3.8799 -5.3821 -5.8537 42 1 3.4918 -3.9713 -6.8673 43 1 5.5389 -4.3718 -8.2083 44 1 5.9269 -5.7825 -7.1946 45 1 6.3889 -7.0075 -10.6363 46 1 3.6111 -3.6931 -4.1686 47 1 3.9299 -2.1281 -4.9796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:10 Heat of formation + Delta-G solvation = 45.755074 kcal Electronic energy + Delta-G solvation = -28979.204496 eV Core-core repulsion = 24972.453513 eV Total energy + Delta-G solvation = -4006.750983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.93207 -41.30168 -38.06388 -36.72664 -36.40383 -34.68909 -33.39568 -32.30784 -30.64221 -29.55707 -28.95948 -28.06537 -27.74895 -24.73466 -24.01898 -23.35932 -22.26872 -21.82520 -21.05520 -19.97723 -19.09388 -18.52943 -17.88170 -16.82177 -16.62707 -16.36275 -15.83360 -15.27855 -14.95788 -14.72403 -14.43642 -14.38815 -14.12066 -13.95011 -13.72265 -13.49357 -13.28326 -13.09766 -12.92536 -12.77071 -12.49384 -12.31835 -12.11044 -11.87331 -11.73951 -11.52765 -11.35210 -11.24448 -11.03730 -10.98937 -10.82934 -10.66229 -10.49559 -10.36838 -9.82507 -9.81304 -9.37583 -9.30552 -9.11007 -8.32219 -7.92555 -5.98047 -4.00122 0.68221 1.80572 2.14903 2.54321 2.67580 3.27859 3.33708 3.39707 3.43466 3.66523 3.95908 4.19523 4.43906 4.44370 4.49985 4.52314 4.65058 4.78070 4.86023 4.95869 5.00633 5.04971 5.05949 5.18511 5.23550 5.38041 5.43043 5.52935 5.59046 5.67159 5.69410 5.72524 5.81112 5.87550 5.97932 6.07324 6.12052 6.25068 6.41641 6.46117 6.64204 6.95415 7.32903 7.43409 7.76262 7.80907 7.88460 7.89772 8.08448 8.45241 9.06933 9.63447 11.13340 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002358 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.065390 B =11869.834976 C =12775.457886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.384 5.384 4 O 0.080 5.920 5 C 0.158 3.842 6 C 0.223 3.777 7 N -0.624 5.624 8 C 0.099 3.901 9 C -0.114 4.114 10 C -0.097 4.097 11 C -0.098 4.098 12 C 0.037 3.963 13 N -0.505 5.505 14 C 0.051 3.949 15 C 0.031 3.969 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.051 3.949 25 C 0.535 3.465 26 O -0.501 6.501 27 N -0.458 5.458 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.052 0.948 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.193 16.226 23.054 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.092 5.092 4 O 0.021 5.979 5 C -0.066 4.066 6 C 0.098 3.902 7 N -0.361 5.361 8 C -0.023 4.023 9 C -0.152 4.152 10 C -0.101 4.101 11 C -0.137 4.137 12 C -0.091 4.091 13 N -0.229 5.229 14 C -0.076 4.076 15 C -0.006 4.006 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.077 4.077 25 C 0.323 3.677 26 O -0.374 6.374 27 N -0.193 5.193 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.480 16.553 22.829 28.203 hybrid contribution -0.960 -1.117 -0.099 1.476 sum -1.440 15.437 22.730 27.514 Atomic orbital electron populations 1.20166 0.82813 1.04905 1.04334 1.26011 1.00787 0.83364 1.00436 1.74627 0.89440 1.23932 1.21204 1.85282 1.22447 1.24807 1.65364 1.29549 0.97776 0.82265 0.96967 1.19686 0.87295 0.98906 0.84343 1.48434 1.49604 1.25388 1.12645 1.22335 0.93984 0.94422 0.91567 1.22693 1.03888 0.93976 0.94625 1.21402 0.98300 0.97695 0.92684 1.22223 0.96125 0.96371 0.98967 1.23143 0.97711 0.94789 0.93476 1.65611 1.14671 1.26407 1.16189 1.22524 0.95686 0.93817 0.95563 1.19034 0.94909 0.95383 0.91304 1.21204 0.95814 1.28555 1.10491 0.92819 1.24985 0.95004 0.96753 0.97555 1.69972 1.12256 1.43546 1.27488 0.86600 0.80579 0.80202 0.80657 1.20649 1.21225 1.19927 1.22939 0.94365 0.99845 0.90596 1.20700 0.78980 0.80638 0.87412 1.90762 1.35544 1.35834 1.75219 1.72008 0.99758 1.29228 1.18269 0.89244 0.89438 0.88827 0.86204 0.85335 0.90162 0.90098 0.89747 0.88036 0.89832 0.91348 0.89261 0.93652 0.95723 0.92036 0.95715 0.96548 0.93030 0.93022 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.17 1.86 8.22 -156.37 -1.28 0.57 16 3 N -0.38 -4.42 12.16 30.90 0.38 -4.04 16 4 O 0.08 0.81 11.31 18.12 0.20 1.02 16 5 C 0.16 1.55 8.10 -13.06 -0.11 1.45 16 6 C 0.22 1.56 6.57 -5.19 -0.03 1.52 16 7 N -0.62 -5.55 2.93 -173.90 -0.51 -6.06 16 8 C 0.10 0.62 7.36 -2.94 -0.02 0.60 16 9 C -0.11 -0.98 6.24 -25.51 -0.16 -1.14 16 10 C -0.10 -1.18 0.83 -155.24 -0.13 -1.30 16 11 C -0.10 -1.20 6.32 -25.74 -0.16 -1.36 16 12 C 0.04 0.61 5.76 -2.00 -0.01 0.59 16 13 N -0.50 -9.13 5.37 -230.15 -1.24 -10.36 16 14 C 0.05 1.11 4.75 -3.82 -0.02 1.09 16 15 C 0.03 0.81 5.03 -27.88 -0.14 0.67 16 16 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 17 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 20 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.05 0.79 5.65 -2.57 -0.01 0.78 16 25 C 0.54 6.88 6.64 -11.22 -0.07 6.80 16 26 O -0.50 -8.46 17.09 5.56 0.09 -8.37 16 27 N -0.46 -5.67 11.55 -9.87 -0.11 -5.79 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.13 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 36 H 0.10 0.77 7.42 -51.93 -0.39 0.38 16 37 H 0.08 0.84 7.32 -51.93 -0.38 0.46 16 38 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 39 H 0.09 1.52 7.79 -51.93 -0.40 1.11 16 40 H 0.05 0.80 7.81 -51.93 -0.41 0.40 16 41 H 0.02 0.54 7.88 -51.93 -0.41 0.13 16 42 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 43 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.02 0.45 7.27 -51.93 -0.38 0.07 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.05 0.90 7.39 -51.93 -0.38 0.52 16 47 H 0.08 1.17 7.46 -51.93 -0.39 0.78 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -35.94 385.79 -9.10 -45.04 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -7.26 Total: -4.40 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.19 Total: -3.50 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.75 Total: -52.46 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.30 Total: -7.35 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.94 -9.10 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.796 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds