Wall clock time and date at job start Tue Mar 31 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29941 * 126.28744 * 2 1 4 4 O 1.21300 * 110.24994 * 179.84392 * 3 2 1 5 5 C 1.33637 * 109.81377 * 0.42873 * 4 3 2 6 6 C 1.50697 * 126.55410 * 179.71309 * 5 4 3 7 7 N 1.46507 * 109.47418 * 270.02366 * 6 5 4 8 8 C 1.46875 * 124.36885 * 89.99801 * 7 6 5 9 9 C 1.54705 * 105.51920 * 196.83041 * 8 7 6 10 10 C 1.53622 * 101.50789 * 335.47420 * 9 8 7 11 11 C 1.53254 * 111.05092 * 262.69078 * 10 9 8 12 12 C 1.54637 * 104.67488 * 239.01004 * 11 10 9 13 13 N 1.48647 * 104.63414 * 23.68772 * 12 11 10 14 14 C 1.46898 * 111.00185 * 201.49096 * 13 12 11 15 15 C 1.53002 * 109.47092 * 290.12172 * 14 13 12 16 16 C 1.50697 * 109.47195 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00123 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99459 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46798 * 89.99848 * 20 18 16 22 22 H 1.48499 * 109.47201 * 209.99937 * 20 18 16 23 23 H 1.48501 * 109.47237 * 330.00107 * 20 18 16 24 24 C 1.48816 * 104.37855 * 321.13838 * 13 12 11 25 25 C 1.34750 * 124.37232 * 269.70529 * 7 6 5 26 26 O 1.21281 * 125.13908 * 358.96843 * 25 7 6 27 27 N 1.31136 * 106.89648 * 359.73810 * 5 4 3 28 28 H 1.09001 * 109.46953 * 269.68287 * 1 2 3 29 29 H 1.09000 * 109.47318 * 29.67885 * 1 2 3 30 30 H 1.09000 * 109.47161 * 149.68516 * 1 2 3 31 31 H 1.09002 * 109.47152 * 30.02575 * 6 5 4 32 32 H 1.08998 * 109.47085 * 150.02888 * 6 5 4 33 33 H 1.09002 * 110.24116 * 315.83840 * 8 7 6 34 34 H 1.09002 * 110.23937 * 77.81766 * 8 7 6 35 35 H 1.08998 * 111.02171 * 93.53113 * 9 8 7 36 36 H 1.09002 * 111.01939 * 217.41897 * 9 8 7 37 37 H 1.09002 * 110.39635 * 357.81651 * 11 10 9 38 38 H 1.08998 * 110.39568 * 120.21278 * 11 10 9 39 39 H 1.09004 * 110.40002 * 142.46874 * 12 11 10 40 40 H 1.08995 * 110.40904 * 264.89363 * 12 11 10 41 41 H 1.09005 * 109.47258 * 50.12218 * 14 13 12 42 42 H 1.09001 * 109.47192 * 170.11841 * 14 13 12 43 43 H 1.09005 * 109.47106 * 300.00139 * 15 14 13 44 44 H 1.09005 * 109.46889 * 59.99776 * 15 14 13 45 45 H 0.97004 * 119.99674 * 179.97438 * 19 18 16 46 46 H 1.08994 * 110.45356 * 279.83149 * 24 13 12 47 47 H 1.09003 * 110.45770 * 157.26678 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0031 5 6 3.5299 -0.6212 -0.0040 6 6 4.7970 -1.4370 -0.0092 7 7 5.2069 -1.6936 -1.3921 8 6 6.0952 -0.8196 -2.1694 9 6 5.8969 -1.2357 -3.6462 10 6 5.4099 -2.6847 -3.4935 11 6 6.5656 -3.6755 -3.6714 12 6 6.1371 -4.5679 -4.8593 13 7 5.1675 -3.7384 -5.6217 14 6 4.2997 -4.5781 -6.4582 15 6 5.1191 -5.1758 -7.6038 16 6 4.2290 -6.0377 -8.4616 17 1 3.1835 -6.1485 -8.2141 18 6 4.7495 -6.6858 -9.5617 19 7 6.0226 -6.5512 -9.8626 20 14 3.6464 -7.7548 -10.6245 21 1 3.0482 -6.9289 -11.7041 22 1 4.4489 -8.8500 -11.2259 23 1 2.5649 -8.3351 -9.7885 24 6 4.3792 -3.0346 -4.5739 25 6 4.8222 -2.7650 -2.1132 26 8 4.1073 -3.6578 -1.7099 27 7 2.3030 -1.0841 -0.0060 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3633 -0.8871 -0.5187 31 1 5.5845 -0.8883 0.5074 32 1 4.6209 -2.3848 0.4994 33 1 5.8131 0.2241 -2.0307 34 1 7.1320 -0.9736 -1.8702 35 1 5.1396 -0.6176 -4.1283 36 1 6.8386 -1.1954 -4.1936 37 1 7.4879 -3.1448 -3.9080 38 1 6.6925 -4.2766 -2.7711 39 1 6.9986 -4.8128 -5.4806 40 1 5.6574 -5.4774 -4.4978 41 1 3.8799 -5.3821 -5.8537 42 1 3.4918 -3.9713 -6.8673 43 1 5.5389 -4.3718 -8.2083 44 1 5.9269 -5.7825 -7.1946 45 1 6.3889 -7.0075 -10.6363 46 1 3.6111 -3.6931 -4.1686 47 1 3.9299 -2.1281 -4.9796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:10 Heat of formation + Delta-G solvation = 18.638151 kcal Electronic energy + Delta-G solvation = -28980.380374 eV Core-core repulsion = 24972.453513 eV Total energy + Delta-G solvation = -4007.926861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.72290 -42.23752 -39.31445 -37.65841 -37.20368 -35.95297 -34.95341 -33.65331 -31.88499 -30.45578 -30.24539 -29.23804 -28.47944 -26.51951 -24.82387 -24.42191 -23.48254 -23.00277 -21.89678 -21.62466 -20.05419 -19.33808 -18.66047 -18.58507 -17.66062 -17.35860 -16.90058 -16.66893 -16.34866 -15.83421 -15.67873 -15.44334 -15.06262 -14.91876 -14.73819 -14.55084 -14.46634 -14.04405 -13.98087 -13.79013 -13.65477 -13.46986 -13.12326 -13.04824 -12.94111 -12.74570 -12.66766 -12.51522 -12.42214 -12.38627 -12.16889 -12.03487 -11.75574 -11.62690 -11.35892 -11.24483 -11.14457 -10.77158 -10.55932 -10.04066 -9.47801 -8.21423 -6.32570 -0.07178 1.00853 1.26443 1.38870 1.40358 1.51404 1.76911 1.95797 2.39235 2.62775 2.94562 2.97318 3.11668 3.32318 3.39671 3.53963 3.82013 3.89889 3.94429 4.09890 4.25255 4.29837 4.33881 4.43382 4.44686 4.46038 4.48938 4.54433 4.61140 4.65114 4.71881 4.74372 4.84861 4.85210 4.95464 5.01505 5.02222 5.10173 5.15750 5.18282 5.38704 5.42416 5.59434 5.74593 5.85061 5.91653 6.03517 6.27287 6.83081 6.97348 7.04963 7.36105 8.90549 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.002358 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.065390 B =11869.834976 C =12775.457886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.155 3.845 3 N -0.402 5.402 4 O 0.087 5.913 5 C 0.165 3.835 6 C 0.220 3.780 7 N -0.614 5.614 8 C 0.101 3.899 9 C -0.111 4.111 10 C -0.096 4.096 11 C -0.085 4.085 12 C 0.031 3.969 13 N -0.508 5.508 14 C 0.068 3.932 15 C 0.043 3.957 16 C -0.549 4.549 17 H 0.055 0.945 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.267 1.267 24 C 0.052 3.948 25 C 0.530 3.470 26 O -0.553 6.553 27 N -0.499 5.499 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.013 0.987 42 H 0.061 0.939 43 H -0.001 1.001 44 H -0.005 1.005 45 H 0.265 0.735 46 H 0.024 0.976 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 17.977 24.122 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 N -0.110 5.110 4 O 0.029 5.971 5 C -0.057 4.057 6 C 0.096 3.904 7 N -0.348 5.348 8 C -0.020 4.020 9 C -0.149 4.149 10 C -0.100 4.100 11 C -0.123 4.123 12 C -0.097 4.097 13 N -0.232 5.232 14 C -0.061 4.061 15 C 0.006 3.994 16 C -0.587 4.587 17 H 0.073 0.927 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.789 3.211 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.076 4.076 25 C 0.318 3.682 26 O -0.430 6.430 27 N -0.234 5.234 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.192 0.808 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.017 0.983 44 H 0.013 0.987 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.426 18.359 23.918 30.154 hybrid contribution -1.209 -1.639 -0.418 2.079 sum -0.782 16.720 23.500 28.852 Atomic orbital electron populations 1.20320 0.80993 1.05347 1.05594 1.26590 1.02127 0.83022 1.00023 1.74600 0.89958 1.24326 1.22104 1.85249 1.21915 1.24810 1.65171 1.30043 0.98018 0.82258 0.95401 1.20150 0.87644 0.99143 0.83491 1.48460 1.48762 1.24275 1.13311 1.22627 0.95278 0.94860 0.89188 1.22743 1.04442 0.90815 0.96879 1.21377 0.96987 1.00260 0.91399 1.22184 0.97324 0.95818 0.96958 1.23185 0.96665 0.94952 0.94929 1.65520 1.14526 1.25780 1.17334 1.22150 0.95358 0.93842 0.94711 1.18822 0.94462 0.94069 0.92094 1.21608 0.96250 1.29434 1.11449 0.92719 1.25918 0.96553 0.98027 0.98897 1.70092 1.14055 1.44411 1.28168 0.85456 0.78612 0.78318 0.78709 1.19552 1.20395 1.19189 1.22945 0.94658 0.99092 0.90942 1.20786 0.78477 0.81035 0.87894 1.90738 1.37964 1.38109 1.76173 1.72035 1.01198 1.30329 1.19835 0.87520 0.88273 0.89029 0.80764 0.85924 0.87866 0.86496 0.90077 0.86269 0.86576 0.90740 0.90331 0.95902 0.96909 0.92050 0.98283 0.98701 0.92632 0.95806 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.51 71.24 0.75 -0.18 16 2 C 0.15 3.36 8.22 138.47 1.14 4.50 16 3 N -0.40 -8.76 12.16 -60.34 -0.73 -9.49 16 4 O 0.09 1.59 11.31 74.89 0.85 2.43 16 5 C 0.17 2.97 8.10 88.38 0.72 3.68 16 6 C 0.22 2.41 6.57 85.63 0.56 2.98 16 7 N -0.61 -9.04 2.93 -822.49 -2.41 -11.45 16 8 C 0.10 0.77 7.36 86.89 0.64 1.41 16 9 C -0.11 -1.53 6.24 31.38 0.20 -1.33 16 10 C -0.10 -2.21 0.83 -52.66 -0.04 -2.25 16 11 C -0.08 -1.94 6.32 31.24 0.20 -1.74 16 12 C 0.03 1.04 5.76 86.52 0.50 1.54 16 13 N -0.51 -18.92 5.37 -882.08 -4.74 -23.66 16 14 C 0.07 3.07 4.75 86.30 0.41 3.48 16 15 C 0.04 2.36 5.03 29.85 0.15 2.51 16 16 C -0.55 -32.38 9.11 25.60 0.23 -32.15 16 17 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.00 0.26 5.46 84.66 0.46 0.72 16 19 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 20 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.05 1.64 5.65 86.05 0.49 2.12 16 25 C 0.53 13.07 6.64 87.51 0.58 13.65 16 26 O -0.55 -19.09 17.09 -3.03 -0.05 -19.14 16 27 N -0.50 -12.14 11.55 -303.22 -3.50 -15.65 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.17 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.12 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.08 1.20 7.51 -2.39 -0.02 1.19 16 36 H 0.12 1.28 7.42 -2.39 -0.02 1.26 16 37 H 0.12 1.92 7.32 -2.39 -0.02 1.91 16 38 H 0.07 1.65 7.75 -2.39 -0.02 1.63 16 39 H 0.08 2.79 7.79 -2.39 -0.02 2.77 16 40 H 0.02 0.86 7.81 -2.39 -0.02 0.84 16 41 H 0.01 0.60 7.88 -2.38 -0.02 0.58 16 42 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 43 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 44 H -0.01 -0.31 7.27 -2.38 -0.02 -0.33 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.02 0.88 7.39 -2.39 -0.02 0.86 16 47 H 0.09 2.61 7.46 -2.39 -0.02 2.59 16 Total: -1.00 -82.78 385.79 -0.33 -83.11 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 0.97 Total: 4.35 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 6.97 Total: -1.05 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -11.10 Total: -116.93 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.79 Total: -16.70 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -82.78 -0.33 -83.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.751 kcal (2) G-P(sol) polarization free energy of solvation -82.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds