Wall clock time and date at job start Tue Mar 31 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29945 * 126.28664 * 2 1 4 4 O 1.21304 * 110.24980 * 179.73215 * 3 2 1 5 5 C 1.33645 * 109.80958 * 0.47314 * 4 3 2 6 6 C 1.50694 * 126.54976 * 179.80044 * 5 4 3 7 7 N 1.46502 * 109.47206 * 269.68671 * 6 5 4 8 8 C 1.46878 * 124.37814 * 269.97609 * 7 6 5 9 9 C 1.54712 * 105.52324 * 196.83837 * 8 7 6 10 10 C 1.53579 * 101.50820 * 335.50381 * 9 8 7 11 11 C 1.53316 * 111.07530 * 262.64731 * 10 9 8 12 12 C 1.54498 * 104.76068 * 216.61841 * 11 10 9 13 13 C 1.54462 * 105.04139 * 359.24946 * 12 11 10 14 14 N 1.47403 * 111.07034 * 144.99881 * 10 9 8 15 15 C 1.46907 * 110.99753 * 278.32492 * 14 10 9 16 16 C 1.53004 * 109.46639 * 170.00201 * 15 14 10 17 17 C 1.50697 * 109.46723 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00535 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99763 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00342 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47462 * 60.00057 * 21 19 17 23 23 H 1.48503 * 109.47194 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47215 * 299.99791 * 21 19 17 25 25 C 1.34764 * 124.37174 * 90.00011 * 7 6 5 26 26 O 1.21280 * 125.13489 * 358.68115 * 25 7 6 27 27 N 1.31130 * 106.89447 * 359.53919 * 5 4 3 28 28 H 1.09003 * 109.46324 * 269.96717 * 1 2 3 29 29 H 1.09001 * 109.47203 * 29.96226 * 1 2 3 30 30 H 1.08996 * 109.47243 * 149.96911 * 1 2 3 31 31 H 1.09000 * 109.47580 * 149.68803 * 6 5 4 32 32 H 1.08998 * 109.47312 * 29.69067 * 6 5 4 33 33 H 1.09000 * 110.23665 * 315.85788 * 8 7 6 34 34 H 1.08999 * 110.23461 * 77.82556 * 8 7 6 35 35 H 1.08996 * 111.01758 * 93.56137 * 9 8 7 36 36 H 1.09000 * 111.01402 * 217.41124 * 9 8 7 37 37 H 1.08999 * 110.37970 * 335.43805 * 11 10 9 38 38 H 1.09004 * 110.38079 * 97.68174 * 11 10 9 39 39 H 1.08996 * 110.32481 * 118.14458 * 12 11 10 40 40 H 1.09000 * 110.32225 * 240.36308 * 12 11 10 41 41 H 1.09001 * 110.37094 * 142.38130 * 13 12 11 42 42 H 1.08997 * 110.37701 * 264.62002 * 13 12 11 43 43 H 1.09002 * 109.46648 * 289.99821 * 15 14 10 44 44 H 1.08993 * 109.47324 * 49.99901 * 15 14 10 45 45 H 1.08999 * 109.46945 * 299.99627 * 16 15 14 46 46 H 1.08993 * 109.47508 * 59.99812 * 16 15 14 47 47 H 0.96997 * 120.00543 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0053 5 6 3.5299 -0.6212 -0.0010 6 6 4.7969 -1.4370 -0.0018 7 7 5.2070 -1.7009 -1.3833 8 6 4.7833 -2.8698 -2.1653 9 6 5.7718 -2.9541 -3.3524 10 6 6.2439 -1.4969 -3.4622 11 6 5.4614 -0.7438 -4.5444 12 6 6.4976 0.1998 -5.1947 13 6 7.8127 -0.0589 -4.4270 14 7 7.6604 -1.4276 -3.8643 15 6 8.5459 -1.6232 -2.7086 16 6 9.9870 -1.7939 -3.1935 17 6 10.8953 -1.9952 -2.0080 18 1 10.4858 -2.0005 -1.0087 19 6 12.2492 -2.1727 -2.1992 20 7 12.7478 -2.1668 -3.4161 21 14 13.3752 -2.4216 -0.7297 22 1 12.9559 -3.6358 0.0152 23 1 14.7739 -2.5874 -1.2003 24 1 13.2912 -1.2388 0.1643 25 6 6.0221 -0.9027 -2.1006 26 8 6.5002 0.1405 -1.7080 27 7 2.3030 -1.0841 -0.0008 28 1 -0.3632 -0.0006 1.0277 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6209 -2.3822 0.5117 32 1 5.5844 -0.8856 0.5120 33 1 4.8457 -3.7726 -1.5577 34 1 3.7660 -2.7301 -2.5309 35 1 6.6044 -3.6185 -3.1214 36 1 5.2630 -3.2705 -4.2630 37 1 5.0676 -1.4419 -5.2831 38 1 4.6507 -0.1693 -4.0963 39 1 6.6210 -0.0430 -6.2500 40 1 6.1891 1.2388 -5.0778 41 1 8.6632 -0.0209 -5.1077 42 1 7.9350 0.6709 -3.6268 43 1 8.4837 -0.7552 -2.0523 44 1 8.2384 -2.5147 -2.1621 45 1 10.0491 -2.6619 -3.8499 46 1 10.2945 -0.9024 -3.7401 47 1 13.7002 -2.2921 -3.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:04 Heat of formation + Delta-G solvation = 49.127377 kcal Electronic energy + Delta-G solvation = -29987.676765 eV Core-core repulsion = 25981.072016 eV Total energy + Delta-G solvation = -4006.604749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.82303 -41.35262 -37.69414 -36.63509 -36.26049 -34.14473 -33.60396 -31.93255 -31.63521 -29.51295 -28.60163 -27.91737 -27.58058 -24.55180 -23.99715 -23.38300 -22.34893 -21.56745 -20.94451 -19.99708 -18.95580 -18.38977 -17.75077 -16.83272 -16.42363 -16.26959 -15.69860 -15.13042 -14.97164 -14.64067 -14.40731 -14.31434 -14.19119 -13.95279 -13.82074 -13.25132 -13.03622 -12.97216 -12.87975 -12.48318 -12.40483 -12.18588 -12.11777 -11.73699 -11.69765 -11.49226 -11.33731 -11.14418 -10.96988 -10.81775 -10.77971 -10.63454 -10.50638 -10.30533 -9.98661 -9.76987 -9.38490 -9.14723 -9.10288 -8.31112 -7.88878 -5.96819 -3.99064 0.79492 1.86193 2.31251 2.65850 2.88448 3.33813 3.35247 3.39518 3.42018 3.74831 4.09181 4.35343 4.47431 4.51884 4.58925 4.68639 4.83225 4.85269 4.97839 4.98986 5.06637 5.12103 5.17844 5.23276 5.28571 5.39037 5.39457 5.55450 5.61845 5.68230 5.78719 5.87692 5.91685 5.97695 6.08640 6.13567 6.22349 6.39063 6.46579 6.52214 6.82612 6.95846 7.28862 7.36337 7.76403 7.89262 7.89953 8.07257 8.09393 8.45623 9.07418 9.64233 11.14516 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003121 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.525833 B = 8969.086781 C = 9849.302484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.162 3.838 3 N -0.384 5.384 4 O 0.089 5.911 5 C 0.168 3.832 6 C 0.218 3.782 7 N -0.621 5.621 8 C 0.104 3.896 9 C -0.114 4.114 10 C 0.057 3.943 11 C -0.098 4.098 12 C -0.123 4.123 13 C 0.032 3.968 14 N -0.475 5.475 15 C 0.040 3.960 16 C 0.035 3.965 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.511 3.489 26 O -0.502 6.502 27 N -0.474 5.474 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.023 0.977 46 H 0.016 0.984 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -0.502 2.257 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.111 4.111 3 N -0.092 5.092 4 O 0.031 5.969 5 C -0.054 4.054 6 C 0.093 3.907 7 N -0.358 5.358 8 C -0.018 4.018 9 C -0.152 4.152 10 C -0.037 4.037 11 C -0.137 4.137 12 C -0.161 4.161 13 C -0.096 4.096 14 N -0.198 5.198 15 C -0.087 4.087 16 C -0.002 4.002 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.297 3.703 26 O -0.374 6.374 27 N -0.210 5.210 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.371 0.171 2.040 24.457 hybrid contribution 0.585 0.413 1.563 1.719 sum -23.786 0.584 3.603 24.065 Atomic orbital electron populations 1.20127 0.82873 1.04651 1.04269 1.25942 1.00623 0.83609 1.00890 1.74673 0.89522 1.24137 1.20833 1.85376 1.22081 1.24790 1.64677 1.29566 0.97487 0.82457 0.95933 1.19734 0.87718 0.98558 0.84718 1.48486 1.48756 1.26106 1.12462 1.22274 0.98513 0.87879 0.93167 1.22578 0.99151 0.95511 0.97918 1.22149 0.94114 0.96183 0.91246 1.22090 0.97220 0.98197 0.96149 1.22367 0.94807 0.98827 1.00064 1.23202 0.97569 0.90005 0.98837 1.65598 0.99130 1.26434 1.28652 1.22724 0.95954 0.99655 0.90378 1.18976 0.87159 0.97617 0.96474 1.21128 0.92305 1.49533 0.92991 0.92976 1.24972 0.98182 0.95422 0.95631 1.69956 1.12976 1.50095 1.20188 0.86675 0.79745 0.78693 0.82979 1.20260 1.21277 1.20278 1.21704 0.76896 0.83447 0.88217 1.90743 1.49553 1.22032 1.75076 1.71879 0.99579 1.29538 1.19958 0.89329 0.89547 0.89029 0.85344 0.86064 0.89679 0.91129 0.88472 0.88659 0.89872 0.92008 0.90853 0.91597 0.89536 0.92435 0.93910 0.92498 0.95831 0.96538 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.16 1.83 8.22 -156.38 -1.28 0.55 16 3 N -0.38 -5.18 12.16 30.90 0.38 -4.80 16 4 O 0.09 1.24 11.31 18.09 0.20 1.45 16 5 C 0.17 1.97 8.10 -13.06 -0.11 1.87 16 6 C 0.22 2.18 6.56 -5.20 -0.03 2.14 16 7 N -0.62 -7.39 2.93 -173.91 -0.51 -7.90 16 8 C 0.10 0.96 7.37 -2.94 -0.02 0.94 16 9 C -0.11 -1.25 6.28 -25.53 -0.16 -1.41 16 10 C 0.06 0.82 0.56 -132.25 -0.07 0.75 16 11 C -0.10 -1.22 6.17 -25.78 -0.16 -1.38 16 12 C -0.12 -1.65 7.01 -25.18 -0.18 -1.83 16 13 C 0.03 0.55 5.57 -2.03 -0.01 0.54 16 14 N -0.47 -8.55 5.02 -217.14 -1.09 -9.64 16 15 C 0.04 0.85 3.73 -3.82 -0.01 0.84 16 16 C 0.04 0.93 5.09 -27.88 -0.14 0.78 16 17 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.51 7.96 5.48 -11.23 -0.06 7.90 16 26 O -0.50 -9.65 14.82 5.56 0.08 -9.57 16 27 N -0.47 -5.49 11.55 -9.87 -0.11 -5.60 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.23 7.95 -51.93 -0.41 0.82 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.20 7.39 -51.93 -0.38 0.82 16 36 H 0.09 0.83 7.45 -51.93 -0.39 0.44 16 37 H 0.08 0.84 7.46 -51.93 -0.39 0.46 16 38 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.56 7.91 -51.93 -0.41 1.15 16 42 H 0.06 1.12 6.80 -51.93 -0.35 0.77 16 43 H 0.04 1.00 5.92 -51.93 -0.31 0.69 16 44 H 0.06 1.19 7.28 -51.93 -0.38 0.81 16 45 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.02 0.46 7.51 -51.93 -0.39 0.07 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -35.13 380.00 -9.05 -44.18 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.16 Total: -2.45 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.28 Total: -1.95 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.60 Total: -54.21 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.29 Total: -8.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.13 -9.05 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.305 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds