Wall clock time and date at job start Tue Mar 31 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29945 * 126.28664 * 2 1 4 4 O 1.21304 * 110.24980 * 179.73215 * 3 2 1 5 5 C 1.33645 * 109.80958 * 0.47314 * 4 3 2 6 6 C 1.50694 * 126.54976 * 179.80044 * 5 4 3 7 7 N 1.46502 * 109.47206 * 269.68671 * 6 5 4 8 8 C 1.46878 * 124.37814 * 269.97609 * 7 6 5 9 9 C 1.54712 * 105.52324 * 196.83837 * 8 7 6 10 10 C 1.53579 * 101.50820 * 335.50381 * 9 8 7 11 11 C 1.53316 * 111.07530 * 262.64731 * 10 9 8 12 12 C 1.54498 * 104.76068 * 216.61841 * 11 10 9 13 13 C 1.54462 * 105.04139 * 359.24946 * 12 11 10 14 14 N 1.47403 * 111.07034 * 144.99881 * 10 9 8 15 15 C 1.46907 * 110.99753 * 278.32492 * 14 10 9 16 16 C 1.53004 * 109.46639 * 170.00201 * 15 14 10 17 17 C 1.50697 * 109.46723 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00535 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99763 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00342 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99810 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47462 * 60.00057 * 21 19 17 23 23 H 1.48503 * 109.47194 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47215 * 299.99791 * 21 19 17 25 25 C 1.34764 * 124.37174 * 90.00011 * 7 6 5 26 26 O 1.21280 * 125.13489 * 358.68115 * 25 7 6 27 27 N 1.31130 * 106.89447 * 359.53919 * 5 4 3 28 28 H 1.09003 * 109.46324 * 269.96717 * 1 2 3 29 29 H 1.09001 * 109.47203 * 29.96226 * 1 2 3 30 30 H 1.08996 * 109.47243 * 149.96911 * 1 2 3 31 31 H 1.09000 * 109.47580 * 149.68803 * 6 5 4 32 32 H 1.08998 * 109.47312 * 29.69067 * 6 5 4 33 33 H 1.09000 * 110.23665 * 315.85788 * 8 7 6 34 34 H 1.08999 * 110.23461 * 77.82556 * 8 7 6 35 35 H 1.08996 * 111.01758 * 93.56137 * 9 8 7 36 36 H 1.09000 * 111.01402 * 217.41124 * 9 8 7 37 37 H 1.08999 * 110.37970 * 335.43805 * 11 10 9 38 38 H 1.09004 * 110.38079 * 97.68174 * 11 10 9 39 39 H 1.08996 * 110.32481 * 118.14458 * 12 11 10 40 40 H 1.09000 * 110.32225 * 240.36308 * 12 11 10 41 41 H 1.09001 * 110.37094 * 142.38130 * 13 12 11 42 42 H 1.08997 * 110.37701 * 264.62002 * 13 12 11 43 43 H 1.09002 * 109.46648 * 289.99821 * 15 14 10 44 44 H 1.08993 * 109.47324 * 49.99901 * 15 14 10 45 45 H 1.08999 * 109.46945 * 299.99627 * 16 15 14 46 46 H 1.08993 * 109.47508 * 59.99812 * 16 15 14 47 47 H 0.96997 * 120.00543 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0053 5 6 3.5299 -0.6212 -0.0010 6 6 4.7969 -1.4370 -0.0018 7 7 5.2070 -1.7009 -1.3833 8 6 4.7833 -2.8698 -2.1653 9 6 5.7718 -2.9541 -3.3524 10 6 6.2439 -1.4969 -3.4622 11 6 5.4614 -0.7438 -4.5444 12 6 6.4976 0.1998 -5.1947 13 6 7.8127 -0.0589 -4.4270 14 7 7.6604 -1.4276 -3.8643 15 6 8.5459 -1.6232 -2.7086 16 6 9.9870 -1.7939 -3.1935 17 6 10.8953 -1.9952 -2.0080 18 1 10.4858 -2.0005 -1.0087 19 6 12.2492 -2.1727 -2.1992 20 7 12.7478 -2.1668 -3.4161 21 14 13.3752 -2.4216 -0.7297 22 1 12.9559 -3.6358 0.0152 23 1 14.7739 -2.5874 -1.2003 24 1 13.2912 -1.2388 0.1643 25 6 6.0221 -0.9027 -2.1006 26 8 6.5002 0.1405 -1.7080 27 7 2.3030 -1.0841 -0.0008 28 1 -0.3632 -0.0006 1.0277 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5143 31 1 4.6209 -2.3822 0.5117 32 1 5.5844 -0.8856 0.5120 33 1 4.8457 -3.7726 -1.5577 34 1 3.7660 -2.7301 -2.5309 35 1 6.6044 -3.6185 -3.1214 36 1 5.2630 -3.2705 -4.2630 37 1 5.0676 -1.4419 -5.2831 38 1 4.6507 -0.1693 -4.0963 39 1 6.6210 -0.0430 -6.2500 40 1 6.1891 1.2388 -5.0778 41 1 8.6632 -0.0209 -5.1077 42 1 7.9350 0.6709 -3.6268 43 1 8.4837 -0.7552 -2.0523 44 1 8.2384 -2.5147 -2.1621 45 1 10.0491 -2.6619 -3.8499 46 1 10.2945 -0.9024 -3.7401 47 1 13.7002 -2.2921 -3.5507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:03 Heat of formation + Delta-G solvation = 22.796135 kcal Electronic energy + Delta-G solvation = -29988.818573 eV Core-core repulsion = 25981.072016 eV Total energy + Delta-G solvation = -4007.746557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.72148 -42.49346 -38.91907 -37.76306 -37.15231 -35.74367 -34.87703 -33.71146 -32.57461 -30.42266 -30.18257 -28.97256 -28.52145 -26.40327 -25.04601 -24.43952 -23.29534 -23.11685 -21.93433 -21.49557 -20.14541 -19.32449 -18.71467 -18.53326 -17.74132 -17.30244 -16.96577 -16.57712 -16.27104 -15.97241 -15.84529 -15.55385 -15.09558 -14.87098 -14.51430 -14.44883 -14.35823 -14.10048 -13.95469 -13.66633 -13.60057 -13.44334 -13.19758 -13.00413 -12.94754 -12.74597 -12.58682 -12.49581 -12.43286 -12.22123 -12.16564 -12.10669 -11.65815 -11.59870 -11.45425 -11.27506 -11.22168 -11.05754 -10.55440 -10.10480 -9.35939 -8.20468 -6.32059 -0.11687 1.01168 1.23588 1.38612 1.42296 1.50079 1.71850 1.97576 2.39329 2.53690 2.89333 2.99480 3.12478 3.34610 3.46918 3.58488 3.80436 3.85111 4.00262 4.05238 4.19480 4.25570 4.31243 4.40517 4.44362 4.54822 4.55080 4.59623 4.63917 4.66038 4.70911 4.77626 4.83373 4.96601 4.97778 5.04105 5.04797 5.12073 5.18676 5.22251 5.33671 5.41751 5.59310 5.72904 5.81381 5.92115 6.03616 6.26453 6.83178 6.94334 6.99325 7.36603 8.91419 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003121 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.525833 B = 8969.086781 C = 9849.302484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.166 3.834 3 N -0.413 5.413 4 O 0.057 5.943 5 C 0.171 3.829 6 C 0.215 3.785 7 N -0.615 5.615 8 C 0.105 3.895 9 C -0.109 4.109 10 C 0.047 3.953 11 C -0.091 4.091 12 C -0.115 4.115 13 C 0.028 3.972 14 N -0.480 5.480 15 C 0.067 3.933 16 C 0.045 3.955 17 C -0.546 4.546 18 H 0.054 0.946 19 C 0.004 3.996 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.272 1.272 25 C 0.500 3.500 26 O -0.552 6.552 27 N -0.475 5.475 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.064 0.936 45 H 0.000 1.000 46 H -0.016 1.016 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.917 -2.571 2.871 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 N -0.126 5.126 4 O 0.004 5.996 5 C -0.051 4.051 6 C 0.090 3.910 7 N -0.351 5.351 8 C -0.016 4.016 9 C -0.147 4.147 10 C -0.046 4.046 11 C -0.129 4.129 12 C -0.153 4.153 13 C -0.100 4.100 14 N -0.203 5.203 15 C -0.061 4.061 16 C 0.008 3.992 17 C -0.584 4.584 18 H 0.073 0.927 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.197 1.197 25 C 0.287 3.713 26 O -0.428 6.428 27 N -0.210 5.210 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.186 0.814 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.018 0.982 46 H 0.003 0.997 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.982 -1.940 2.659 27.182 hybrid contribution 1.330 1.057 1.354 2.172 sum -25.652 -0.883 4.013 25.979 Atomic orbital electron populations 1.20386 0.79861 1.05910 1.05770 1.26783 1.02271 0.82977 0.98669 1.74690 0.89620 1.25393 1.22877 1.85349 1.22642 1.25904 1.65704 1.29857 0.98129 0.81941 0.95208 1.20049 0.86929 1.00082 0.83907 1.48553 1.47451 1.25985 1.13069 1.22535 0.98707 0.87756 0.92577 1.22651 0.99322 0.92389 1.00297 1.22425 0.91728 0.99006 0.91474 1.22150 0.96446 0.98321 0.96023 1.22345 0.92658 0.99709 1.00610 1.23167 0.99545 0.89291 0.98026 1.65499 1.01201 1.26545 1.27076 1.22198 0.94044 0.98820 0.91051 1.18774 0.90269 0.94883 0.95287 1.21524 0.93341 1.49898 0.93635 0.92749 1.25931 0.99884 0.94742 0.98853 1.70091 1.13550 1.50655 1.22567 0.85519 0.77447 0.79161 0.79038 1.18639 1.20524 1.19730 1.21937 0.77123 0.83170 0.89051 1.90718 1.51715 1.24296 1.76112 1.71916 0.99361 1.29527 1.20225 0.87569 0.88676 0.87329 0.81393 0.86920 0.86702 0.89025 0.89948 0.85501 0.86482 0.91705 0.88792 0.91109 0.91384 0.95491 0.96252 0.91769 0.98164 0.99716 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.17 3.46 8.22 138.47 1.14 4.60 16 3 N -0.41 -11.01 12.16 -60.31 -0.73 -11.74 16 4 O 0.06 1.60 11.31 74.81 0.85 2.45 16 5 C 0.17 3.82 8.10 88.38 0.72 4.54 16 6 C 0.22 3.98 6.56 85.63 0.56 4.54 16 7 N -0.62 -13.59 2.93 -822.52 -2.41 -16.00 16 8 C 0.11 1.54 7.37 86.89 0.64 2.18 16 9 C -0.11 -2.07 6.28 31.37 0.20 -1.87 16 10 C 0.05 1.31 0.56 2.83 0.00 1.31 16 11 C -0.09 -2.06 6.17 31.21 0.19 -1.87 16 12 C -0.12 -3.03 7.01 31.60 0.22 -2.81 16 13 C 0.03 1.02 5.57 86.44 0.48 1.51 16 14 N -0.48 -17.76 5.02 -840.90 -4.22 -21.98 16 15 C 0.07 3.00 3.73 86.30 0.32 3.33 16 16 C 0.05 2.52 5.09 29.85 0.15 2.68 16 17 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 18 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.00 0.25 5.46 84.66 0.46 0.71 16 20 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 21 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 22 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.50 15.58 5.48 87.50 0.48 16.06 16 26 O -0.55 -22.34 14.82 -3.03 -0.04 -22.39 16 27 N -0.47 -9.95 11.55 -303.19 -3.50 -13.45 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.11 2.30 7.95 -2.39 -0.02 2.29 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.86 7.39 -2.39 -0.02 1.84 16 36 H 0.13 1.62 7.45 -2.39 -0.02 1.61 16 37 H 0.12 1.87 7.46 -2.39 -0.02 1.85 16 38 H 0.06 1.46 7.85 -2.39 -0.02 1.44 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.67 7.91 -2.39 -0.02 2.66 16 42 H 0.03 1.14 6.80 -2.39 -0.02 1.13 16 43 H 0.02 0.96 5.92 -2.39 -0.01 0.95 16 44 H 0.06 2.74 7.28 -2.39 -0.02 2.73 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 46 H -0.02 -0.95 7.51 -2.39 -0.02 -0.97 16 47 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -81.44 380.00 -0.23 -81.67 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.98 Total: 8.66 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.55 Total: 2.94 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -10.58 Total: -120.54 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.80 Total: -19.94 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -81.44 -0.23 -81.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.471 kcal (2) G-P(sol) polarization free energy of solvation -81.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds