Wall clock time and date at job start Tue Mar 31 2020 19:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47036 * 2 1 4 4 N 1.31923 * 120.17159 * 96.70891 * 3 2 1 5 5 N 1.28278 * 122.32452 * 180.27460 * 4 3 2 6 6 C 1.31918 * 122.51741 * 359.72288 * 5 4 3 7 7 C 1.50697 * 120.01974 * 180.02562 * 6 5 4 8 8 C 1.38502 * 119.96908 * 359.97438 * 6 5 4 9 9 C 1.39730 * 120.16985 * 276.44008 * 3 2 1 10 10 C 1.48135 * 121.14726 * 0.02562 * 9 3 2 11 11 O 1.21509 * 120.00068 * 5.76015 * 10 9 3 12 12 N 1.34777 * 119.99619 * 185.75707 * 10 9 3 13 13 C 1.46505 * 119.99394 * 185.02561 * 12 10 9 14 14 C 1.52998 * 113.28041 * 52.45400 * 13 12 10 15 15 C 1.52994 * 109.47809 * 74.04989 * 14 13 12 16 16 O 1.42899 * 109.47589 * 185.07836 * 15 14 13 17 17 C 1.53498 * 114.20532 * 185.50972 * 13 12 10 18 18 N 1.47072 * 87.98009 * 87.72114 * 17 13 12 19 19 C 1.36945 * 136.05379 * 207.08280 * 18 17 13 20 20 H 1.08003 * 119.99955 * 354.44440 * 19 18 17 21 21 C 1.38810 * 119.99768 * 174.44259 * 19 18 17 22 22 N 1.31618 * 119.99973 * 182.92447 * 21 19 18 23 23 Si 1.86798 * 120.00009 * 2.64510 * 21 19 18 24 24 H 1.48502 * 109.47159 * 54.79392 * 23 21 19 25 25 H 1.48505 * 109.47190 * 174.79203 * 23 21 19 26 26 H 1.48504 * 109.47555 * 294.79610 * 23 21 19 27 27 C 1.47064 * 87.88598 * 27.34353 * 18 17 13 28 28 H 1.08998 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46744 * 299.99627 * 1 2 3 30 30 H 1.08995 * 109.47192 * 59.99657 * 1 2 3 31 31 H 1.09011 * 109.47002 * 240.00134 * 2 1 3 32 32 H 1.08993 * 109.47703 * 120.00341 * 2 1 3 33 33 H 1.08993 * 109.47402 * 269.97904 * 7 6 5 34 34 H 1.09005 * 109.46528 * 29.97447 * 7 6 5 35 35 H 1.09002 * 109.47503 * 149.96913 * 7 6 5 36 36 H 1.07997 * 121.09190 * 179.97438 * 8 6 5 37 37 H 0.96998 * 120.00343 * 5.03149 * 12 10 9 38 38 H 1.09008 * 109.47145 * 194.05525 * 14 13 12 39 39 H 1.09004 * 109.46844 * 314.04933 * 14 13 12 40 40 H 1.08998 * 109.46936 * 305.08370 * 15 14 13 41 41 H 1.09004 * 109.47200 * 65.08034 * 15 14 13 42 42 H 0.96698 * 114.00413 * 179.97438 * 16 15 14 43 43 H 1.09001 * 113.46594 * 332.94481 * 17 13 12 44 44 H 1.08993 * 113.52171 * 202.50720 * 17 13 12 45 45 H 0.96999 * 119.99645 * 4.74212 * 22 21 19 46 46 H 1.09001 * 113.46626 * 87.43579 * 27 18 17 47 47 H 1.09000 * 113.46616 * 217.87576 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3789 2.0016 1.1327 5 7 2.8067 3.2100 1.1812 6 6 2.9370 3.9598 0.1037 7 6 3.4458 5.3730 0.2257 8 6 2.6069 3.4473 -1.1400 9 6 2.1386 2.1281 -1.2004 10 6 1.7637 1.5065 -2.4917 11 8 1.2577 0.4019 -2.5101 12 7 1.9837 2.1663 -3.6461 13 6 1.5139 1.6014 -4.9136 14 6 0.0301 1.2286 -4.8964 15 6 -0.8164 2.5014 -4.9621 16 8 -2.1980 2.1621 -4.8270 17 6 1.9497 2.3920 -6.1550 18 7 3.1827 1.5904 -6.1686 19 6 4.4676 1.7652 -6.6088 20 1 4.7329 2.6546 -7.1611 21 6 5.4290 0.7994 -6.3450 22 7 6.6764 0.9935 -6.7176 23 14 4.9541 -0.7725 -5.4544 24 1 3.8372 -1.4326 -6.1769 25 1 6.1229 -1.6875 -5.4078 26 1 4.5247 -0.4470 -4.0706 27 6 2.4268 0.5160 -5.5075 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.6048 6.0506 0.3726 34 1 4.1221 5.4433 1.0777 35 1 3.9787 5.6473 -0.6847 36 1 2.7062 4.0453 -2.0338 37 1 2.4532 3.0151 -3.6379 38 1 -0.1959 0.5972 -5.7557 39 1 -0.1979 0.6876 -3.9780 40 1 -0.5264 3.1727 -4.1538 41 1 -0.6557 2.9956 -5.9202 42 1 -2.7947 2.9224 -4.8592 43 1 2.1220 3.4500 -5.9574 44 1 1.3130 2.2238 -7.0235 45 1 6.9380 1.8391 -7.1143 46 1 1.9153 -0.1474 -6.2048 47 1 3.0054 -0.0242 -4.7582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506103562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:10 Heat of formation + Delta-G solvation = 36.135107 kcal Electronic energy + Delta-G solvation = -30346.070351 eV Core-core repulsion = 26338.902215 eV Total energy + Delta-G solvation = -4007.168136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57637 -40.30351 -38.34229 -36.80536 -35.27537 -34.07948 -33.62938 -32.50265 -31.53638 -30.81423 -28.18163 -27.33134 -25.80636 -25.51982 -24.54883 -23.34309 -22.10451 -21.53356 -20.65428 -19.30598 -17.82288 -17.75906 -17.59400 -17.36199 -16.18752 -15.99173 -15.60440 -15.31399 -14.97008 -14.79312 -14.27237 -14.24273 -14.10812 -14.03458 -13.66487 -13.50444 -13.35866 -13.26252 -13.02747 -12.61879 -12.39155 -12.08998 -11.90743 -11.82609 -11.67871 -11.32195 -11.00744 -10.98120 -10.89587 -10.62117 -10.43256 -10.36664 -10.23943 -9.96825 -9.65497 -9.56788 -9.36270 -9.24928 -9.02761 -8.74667 -7.30083 -6.41749 -3.37194 0.18071 0.67201 2.69189 2.93140 3.37621 3.39278 3.44066 3.59393 3.73422 4.02191 4.08986 4.19317 4.40617 4.49864 4.55505 4.59974 4.73399 4.84746 5.04030 5.09713 5.20049 5.25345 5.27358 5.28371 5.39255 5.41478 5.45197 5.48508 5.55852 5.73817 5.74897 5.76460 5.84234 5.96928 5.99555 6.01291 6.02690 6.22674 6.25359 6.28984 6.36448 6.42239 6.78605 6.91095 7.47374 7.53876 8.10569 8.13102 8.51689 8.84526 9.36583 10.19597 11.09484 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008974 B = 0.004985 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.366739 B = 5615.344333 C = 6702.941470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.121 3.879 4 N -0.241 5.241 5 N -0.227 5.227 6 C 0.057 3.943 7 C -0.100 4.100 8 C -0.082 4.082 9 C -0.122 4.122 10 C 0.562 3.438 11 O -0.508 6.508 12 N -0.681 5.681 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.081 3.919 16 O -0.574 6.574 17 C 0.125 3.875 18 N -0.624 5.624 19 C -0.307 4.307 20 H 0.083 0.917 21 C -0.018 4.018 22 N -0.931 5.931 23 Si 1.069 2.931 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.093 3.907 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.375 0.625 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.261 0.739 46 H 0.055 0.945 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.292 7.861 10.327 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.023 4.023 4 N -0.082 5.082 5 N -0.071 5.071 6 C -0.087 4.087 7 C -0.158 4.158 8 C -0.112 4.112 9 C -0.136 4.136 10 C 0.347 3.653 11 O -0.384 6.384 12 N -0.332 5.332 13 C 0.046 3.954 14 C -0.159 4.159 15 C 0.003 3.997 16 O -0.379 6.379 17 C -0.002 4.002 18 N -0.352 5.352 19 C -0.433 4.433 20 H 0.101 0.899 21 C -0.217 4.217 22 N -0.572 5.572 23 Si 0.903 3.097 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.221 1.221 27 C -0.033 4.033 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.171 0.829 37 H 0.239 0.761 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.221 0.779 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.367 4.926 12.394 18.883 hybrid contribution -0.534 2.745 -2.358 3.658 sum -13.901 7.672 10.035 18.783 Atomic orbital electron populations 1.21577 0.93325 1.02456 1.01621 1.20721 0.97282 0.88634 1.04931 1.23136 0.92067 0.98633 0.88483 1.73047 1.08107 1.03174 1.23887 1.72806 1.07742 0.99494 1.27013 1.22835 0.96860 0.98995 0.90033 1.20695 1.01922 0.88824 1.04380 1.22561 0.94237 0.94607 0.99757 1.21165 1.01363 0.95148 0.95927 1.17789 0.79337 0.85264 0.82862 1.90710 1.42936 1.18160 1.86643 1.45302 1.58008 1.24837 1.05038 1.21812 0.91811 0.98200 0.83583 1.21686 0.91274 0.97451 1.05484 1.22152 0.81066 0.97186 0.99273 1.86498 1.17169 1.37440 1.96792 1.22628 0.88733 0.95787 0.93051 1.46100 1.04869 1.12458 1.71742 1.20103 0.81173 1.07966 1.34021 0.89912 1.25640 0.93013 1.02985 1.00111 1.70934 1.16164 1.26643 1.43490 0.83709 0.74121 0.76184 0.75712 1.21546 1.22218 1.22124 1.23236 0.92172 0.92687 0.95200 0.91670 0.93434 0.91837 0.87087 0.90240 0.89781 0.89713 0.89924 0.82854 0.76148 0.89951 0.88561 0.94220 0.93504 0.77909 0.93209 0.92674 0.92842 0.92788 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.50 37.16 0.35 -1.24 16 2 C -0.08 -1.03 5.48 -27.88 -0.15 -1.18 16 3 C 0.12 1.77 6.16 -81.99 -0.51 1.26 16 4 N -0.24 -3.67 11.42 33.81 0.39 -3.28 16 5 N -0.23 -3.24 11.41 33.57 0.38 -2.86 16 6 C 0.06 0.66 6.86 -82.46 -0.57 0.09 16 7 C -0.10 -0.76 10.19 36.00 0.37 -0.39 16 8 C -0.08 -0.93 9.33 -38.78 -0.36 -1.30 16 9 C -0.12 -1.70 5.92 -104.57 -0.62 -2.31 16 10 C 0.56 8.60 7.43 -12.20 -0.09 8.51 16 11 O -0.51 -8.60 9.97 5.36 0.05 -8.54 16 12 N -0.68 -10.03 5.30 -48.15 -0.26 -10.28 16 13 C 0.13 2.14 0.74 -131.57 -0.10 2.04 16 14 C -0.12 -1.70 5.06 -26.74 -0.14 -1.84 16 15 C 0.08 0.93 6.75 37.15 0.25 1.18 16 16 O -0.57 -6.64 13.66 -35.23 -0.48 -7.12 16 17 C 0.13 2.12 7.12 -8.50 -0.06 2.06 16 18 N -0.62 -14.11 3.69 -184.56 -0.68 -14.79 16 19 C -0.31 -8.33 11.09 -15.06 -0.17 -8.50 16 20 H 0.08 2.36 8.05 -52.48 -0.42 1.93 16 21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 22 N -0.93 -28.67 13.70 55.49 0.76 -27.91 16 23 Si 1.07 27.16 25.07 -169.99 -4.26 22.90 16 24 H -0.29 -6.93 6.64 56.52 0.38 -6.55 16 25 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 26 H -0.29 -7.23 6.42 56.52 0.36 -6.87 16 27 C 0.09 1.92 5.35 -8.37 -0.04 1.88 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.85 6.85 -51.93 -0.36 0.49 16 31 H 0.11 1.66 5.94 -51.92 -0.31 1.35 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.15 1.28 6.70 -52.49 -0.35 0.93 16 37 H 0.40 5.16 6.94 -40.82 -0.28 4.87 16 38 H 0.08 1.17 7.87 -51.92 -0.41 0.76 16 39 H 0.10 1.52 5.87 -51.93 -0.30 1.22 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.49 7.63 -51.93 -0.40 0.09 16 42 H 0.37 2.49 9.12 45.56 0.42 2.90 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 45 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 46 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 47 H 0.06 1.41 3.97 -51.93 -0.21 1.21 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -34.75 375.54 -6.41 -41.16 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.05 Total: 5.43 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.93 Total: -0.36 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.59 Total: -59.12 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.43 Total: -15.66 kcal Atomic # 14 Polarization: 27.16 SS G_CDS: -4.26 Total: 22.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.75 -6.41 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506103562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.296 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds