Wall clock time and date at job start Tue Mar 31 2020 18:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21304 * 119.99850 * 2 1 4 4 N 1.34778 * 119.99924 * 179.97438 * 2 1 3 5 5 C 1.40440 * 119.99911 * 179.97438 * 4 2 1 6 6 C 1.35002 * 126.86197 * 0.18211 * 5 4 2 7 7 N 1.36772 * 108.93942 * 180.28752 * 6 5 4 8 8 H 0.97001 * 124.79871 * 179.68817 * 7 6 5 9 9 C 1.34595 * 110.41142 * 359.70673 * 7 6 5 10 10 C 1.50702 * 125.81992 * 179.97438 * 9 7 6 11 11 C 1.37827 * 108.36234 * 0.02562 * 9 7 6 12 12 C 1.47135 * 126.99824 * 179.97438 * 11 9 7 13 13 O 1.21638 * 120.00099 * 90.02378 * 12 11 9 14 14 N 1.34781 * 120.00049 * 270.02942 * 12 11 9 15 15 C 1.46494 * 120.00207 * 179.97438 * 14 12 11 16 16 H 1.09002 * 112.84536 * 336.19310 * 15 14 12 17 17 C 1.53780 * 113.61615 * 107.49563 * 15 14 12 18 18 C 1.53784 * 87.07966 * 89.12052 * 17 15 14 19 19 H 1.08998 * 113.68983 * 270.87595 * 18 17 15 20 20 C 1.52993 * 113.61835 * 139.98329 * 18 17 15 21 21 N 1.46496 * 109.47551 * 87.49918 * 20 18 17 22 22 C 1.36934 * 120.00548 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 C 1.53777 * 113.61445 * 205.00017 * 15 14 12 31 31 H 1.08999 * 109.47123 * 270.00038 * 1 2 3 32 32 H 1.09004 * 109.47010 * 29.99850 * 1 2 3 33 33 H 1.09001 * 109.47705 * 150.00102 * 1 2 3 34 34 H 0.97002 * 119.99800 * 0.02562 * 4 2 1 35 35 H 1.08004 * 125.53667 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47193 * 270.02396 * 10 9 7 37 37 H 1.08992 * 109.47055 * 30.02408 * 10 9 7 38 38 H 1.08998 * 109.47187 * 150.02677 * 10 9 7 39 39 H 0.96995 * 119.99813 * 359.97438 * 14 12 11 40 40 H 1.09000 * 113.61604 * 334.57292 * 17 15 14 41 41 H 1.08997 * 113.61858 * 203.66237 * 17 15 14 42 42 H 1.09004 * 109.46862 * 327.50117 * 20 18 17 43 43 H 1.09004 * 109.46998 * 207.50595 * 20 18 17 44 44 H 0.96999 * 119.99694 * 0.02562 * 21 20 18 45 45 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 46 46 H 1.09000 * 113.61211 * 156.33878 * 30 15 14 47 47 H 1.08993 * 113.61909 * 25.42998 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5853 -1.1672 0.0000 6 6 4.3951 -0.0871 0.0024 7 7 5.6964 -0.5079 -0.0057 8 1 6.4683 0.0796 -0.0102 9 6 5.7549 -1.8526 -0.0069 10 6 7.0140 -2.6807 -0.0155 11 6 4.4670 -2.3432 -0.0001 12 6 4.0578 -3.7566 0.0007 13 8 3.8942 -4.3418 1.0544 14 7 3.8643 -4.4028 -1.1662 15 6 3.4575 -5.8101 -1.1654 16 1 3.7345 -6.3302 -0.2484 17 6 1.9932 -6.0283 -1.5813 18 6 2.5007 -6.1206 -3.0301 19 1 2.5422 -5.1591 -3.5417 20 6 1.8035 -7.2034 -3.8560 21 7 0.5919 -6.6489 -4.4649 22 6 -0.2006 -7.4385 -5.2546 23 1 0.0675 -8.4702 -5.4282 24 6 -1.3482 -6.9129 -5.8319 25 7 -2.1102 -7.6720 -6.5906 26 14 -1.8122 -5.1286 -5.5310 27 1 -2.6759 -5.0381 -4.3264 28 1 -0.5809 -4.3261 -5.3186 29 1 -2.5485 -4.6032 -6.7087 30 6 3.8516 -6.5659 -2.4453 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 1.6958 -2.0073 0.0005 35 1 4.0685 0.9424 0.0055 36 1 7.3113 -2.8793 -1.0453 37 1 7.8097 -2.1372 0.4939 38 1 6.8318 -3.6244 0.4985 39 1 3.9945 -3.9360 -2.0064 40 1 1.3536 -5.1651 -1.3969 41 1 1.5672 -6.9595 -1.2078 42 1 1.5352 -8.0381 -3.2082 43 1 2.4764 -7.5529 -4.6390 44 1 0.3514 -5.7222 -4.3092 45 1 -2.9124 -7.3048 -6.9938 46 1 3.9336 -7.6441 -2.3079 47 1 4.7122 -6.1369 -2.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506888588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:14 Heat of formation + Delta-G solvation = 3.393077 kcal Electronic energy + Delta-G solvation = -28590.749608 eV Core-core repulsion = 24582.161670 eV Total energy + Delta-G solvation = -4008.587937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68246 -40.05044 -39.64263 -38.14385 -35.06350 -34.68837 -33.15856 -31.88127 -31.31701 -30.97217 -29.35422 -27.31895 -26.31366 -25.61051 -23.73143 -22.53256 -22.38275 -21.34627 -20.15877 -19.62887 -19.21202 -18.51941 -17.55321 -16.66856 -16.45638 -16.13124 -15.99546 -15.72112 -15.02351 -14.83516 -14.74406 -14.37042 -14.29831 -14.04164 -13.78760 -13.44154 -13.21660 -13.10465 -13.03983 -12.92550 -12.65883 -12.57009 -12.49026 -12.34302 -12.14883 -11.77369 -11.41679 -11.14643 -10.91044 -10.66214 -10.27493 -10.20116 -10.19243 -10.06203 -9.88279 -9.58372 -9.06262 -8.87688 -8.62047 -7.98977 -7.21722 -5.76892 -3.11804 1.76398 1.85816 2.42497 2.63223 2.77323 2.99539 3.34000 3.35516 3.37791 3.43746 4.38469 4.44006 4.58038 4.58422 4.66630 4.71041 4.82610 4.91748 5.00276 5.01625 5.07327 5.09187 5.12374 5.44823 5.46476 5.51665 5.53115 5.59156 5.65593 5.69534 5.79276 5.84633 5.85900 5.96135 6.09031 6.14141 6.25750 6.50901 6.56488 6.64427 6.68932 6.82578 7.10968 7.24422 7.43991 7.82826 8.00141 8.15097 8.42597 9.22111 9.94586 10.14831 11.41796 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.003174 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.347042 B = 8819.142703 C =10783.644812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.539 6.539 4 N -0.641 5.641 5 C 0.092 3.908 6 C -0.026 4.026 7 N -0.544 5.544 8 H 0.420 0.580 9 C 0.086 3.914 10 C -0.092 4.092 11 C -0.240 4.240 12 C 0.596 3.404 13 O -0.536 6.536 14 N -0.702 5.702 15 C 0.114 3.886 16 H 0.101 0.899 17 C -0.141 4.141 18 C -0.119 4.119 19 H 0.086 0.914 20 C 0.167 3.833 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.002 3.998 25 N -0.936 5.936 26 Si 0.886 3.114 27 H -0.284 1.284 28 H -0.278 1.278 29 H -0.291 1.291 30 C -0.136 4.136 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.194 0.806 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.096 0.904 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.669 15.048 15.408 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.416 6.416 4 N -0.284 5.284 5 C -0.008 4.008 6 C -0.156 4.156 7 N -0.141 5.141 8 H 0.257 0.743 9 C -0.032 4.032 10 C -0.150 4.150 11 C -0.253 4.253 12 C 0.382 3.618 13 O -0.412 6.412 14 N -0.352 5.352 15 C 0.009 3.991 16 H 0.119 0.881 17 C -0.179 4.179 18 C -0.138 4.138 19 H 0.104 0.896 20 C 0.040 3.960 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.205 1.205 29 H -0.218 1.218 30 C -0.174 4.174 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.249 0.751 35 H 0.210 0.790 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.237 0.763 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.891 15.276 16.047 28.477 hybrid contribution -0.499 1.300 -0.394 1.447 sum 17.393 16.575 15.653 28.675 Atomic orbital electron populations 1.21879 0.90367 1.05627 1.05258 1.20968 0.90919 0.82688 0.75360 1.90577 1.70220 1.31394 1.49414 1.43055 1.03754 1.09939 1.71695 1.17765 0.82385 0.92133 1.08498 1.22080 0.81125 0.99667 1.12764 1.41386 1.08294 1.05858 1.58519 0.74325 1.20262 0.95012 0.83516 1.04391 1.20452 0.91993 0.99167 1.03381 1.19873 0.91803 0.91525 1.22076 1.17359 0.76072 0.84843 0.83521 1.90800 1.50902 1.68149 1.31397 1.45793 1.69079 1.11821 1.08557 1.21963 0.96208 0.81361 0.99569 0.88103 1.23449 0.95532 1.02740 0.96196 1.22816 0.95327 1.00199 0.95456 0.89609 1.20618 0.87847 0.93560 0.94007 1.42696 1.26443 1.11083 1.59856 1.19083 1.02024 0.95301 1.20865 0.89265 1.24679 0.97482 0.97480 0.99667 1.69706 1.16463 1.35259 1.36945 0.86526 0.78005 0.86425 0.77441 1.21090 1.20465 1.21778 1.23290 0.97649 1.01060 0.95445 0.88382 0.88319 0.89600 0.75076 0.78977 0.90139 0.90946 0.89694 0.76313 0.91621 0.88806 0.95317 0.95614 0.80769 0.93087 0.88507 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.30 36.00 0.37 -0.81 16 2 C 0.51 5.36 7.91 -10.99 -0.09 5.27 16 3 O -0.54 -7.13 14.32 5.54 0.08 -7.05 16 4 N -0.64 -6.73 5.46 -8.52 -0.05 -6.77 16 5 C 0.09 1.07 7.22 -81.52 -0.59 0.49 16 6 C -0.03 -0.28 10.79 -16.50 -0.18 -0.45 16 7 N -0.54 -4.15 5.90 -8.68 -0.05 -4.20 16 8 H 0.42 1.74 8.96 -40.82 -0.37 1.38 16 9 C 0.09 0.76 7.21 -81.53 -0.59 0.18 16 10 C -0.09 -0.56 10.25 36.01 0.37 -0.19 16 11 C -0.24 -2.72 6.09 -102.90 -0.63 -3.35 16 12 C 0.60 7.45 7.32 -12.65 -0.09 7.36 16 13 O -0.54 -8.62 16.71 5.24 0.09 -8.53 16 14 N -0.70 -7.48 5.26 -54.19 -0.28 -7.77 16 15 C 0.11 1.30 4.32 -67.12 -0.29 1.01 16 16 H 0.10 1.23 7.46 -51.93 -0.39 0.84 16 17 C -0.14 -1.84 7.43 -25.92 -0.19 -2.03 16 18 C -0.12 -1.65 3.63 -89.81 -0.33 -1.98 16 19 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 20 C 0.17 3.08 6.10 -4.05 -0.02 3.06 16 21 N -0.76 -17.71 5.41 -59.91 -0.32 -18.03 16 22 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 23 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 24 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 25 N -0.94 -29.45 13.97 55.49 0.78 -28.68 16 26 Si 0.89 21.97 27.74 -169.99 -4.71 17.25 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 30 C -0.14 -1.46 7.39 -25.92 -0.19 -1.66 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.41 3.85 8.83 -40.82 -0.36 3.49 16 35 H 0.19 2.09 5.86 -52.48 -0.31 1.78 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.62 7.95 -51.93 -0.41 0.21 16 39 H 0.40 3.77 8.68 -40.82 -0.35 3.42 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 42 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 8.21 5.53 -40.82 -0.23 7.99 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -37.15 394.18 -8.29 -45.43 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.05 Total: 12.56 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.70 Total: -0.16 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: 0.07 Total: -65.45 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.17 Total: -15.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.15 -8.29 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506888588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.828 kcal (2) G-P(sol) polarization free energy of solvation -37.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds