Wall clock time and date at job start Tue Mar 31 2020 19:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46839 * 2 1 4 4 C 1.38552 * 120.01445 * 125.00671 * 3 2 1 5 5 C 1.40074 * 117.82010 * 180.02562 * 4 3 2 6 6 C 1.48126 * 121.14697 * 180.02562 * 5 4 3 7 7 O 1.21517 * 120.00166 * 174.07946 * 6 5 4 8 8 N 1.34781 * 120.00446 * 354.08447 * 6 5 4 9 9 C 1.46498 * 120.00245 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47055 * 180.02562 * 9 8 6 11 11 O 1.42897 * 110.64431 * 66.68119 * 10 9 8 12 12 C 1.55151 * 110.71970 * 190.02242 * 10 9 8 13 13 C 1.54911 * 101.58135 * 153.86068 * 12 10 9 14 14 N 1.47427 * 104.83372 * 322.99070 * 13 12 10 15 15 C 1.36933 * 125.64766 * 204.16204 * 14 13 12 16 16 H 1.08000 * 120.00023 * 160.37154 * 15 14 13 17 17 C 1.38809 * 120.00199 * 340.36598 * 15 14 13 18 18 N 1.31616 * 119.99953 * 158.98053 * 17 15 14 19 19 Si 1.86799 * 120.00127 * 338.98145 * 17 15 14 20 20 H 1.48498 * 109.47160 * 83.83255 * 19 17 15 21 21 H 1.48494 * 109.47131 * 203.83070 * 19 17 15 22 22 H 1.48506 * 109.47024 * 323.83332 * 19 17 15 23 23 C 1.47025 * 108.70247 * 24.12753 * 14 13 12 24 24 C 1.39774 * 117.70603 * 359.97438 * 5 4 3 25 25 C 1.50700 * 120.16950 * 179.72408 * 24 5 4 26 26 N 1.31892 * 119.65341 * 359.97438 * 24 5 4 27 27 N 1.28275 * 122.33508 * 0.02562 * 26 24 5 28 28 H 1.08991 * 109.47440 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46750 * 300.00031 * 1 2 3 30 30 H 1.08998 * 109.47293 * 59.99960 * 1 2 3 31 31 H 1.09000 * 109.46428 * 240.00123 * 2 1 3 32 32 H 1.08998 * 109.47293 * 120.00040 * 2 1 3 33 33 H 1.07996 * 121.08764 * 359.97438 * 4 3 2 34 34 H 0.96999 * 119.99527 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46713 * 299.99511 * 9 8 6 36 36 H 1.08997 * 109.47480 * 59.99829 * 9 8 6 37 37 H 0.96705 * 114.00270 * 300.70842 * 11 10 9 38 38 H 1.08994 * 111.00697 * 271.93695 * 12 10 9 39 39 H 1.09005 * 111.00686 * 35.79045 * 12 10 9 40 40 H 1.09004 * 110.36828 * 204.15031 * 13 12 10 41 41 H 1.09001 * 110.36709 * 81.82883 * 13 12 10 42 42 H 0.97004 * 120.00181 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88197 * 239.52508 * 23 14 13 44 44 H 1.08999 * 109.88017 * 118.35512 * 23 14 13 45 45 H 1.09005 * 109.46672 * 85.62467 * 25 24 5 46 46 H 1.09000 * 109.46894 * 205.62018 * 25 24 5 47 47 H 1.08991 * 109.47146 * 325.62613 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9122 1.8449 0.9827 5 6 3.3492 3.1750 0.9391 6 6 4.2903 3.7058 1.9523 7 8 4.7398 4.8286 1.8348 8 7 4.6481 2.9435 3.0047 9 6 5.5784 3.4687 4.0071 10 6 5.8160 2.4106 5.0864 11 8 6.5126 1.2864 4.5450 12 6 6.5908 3.0153 6.2869 13 6 6.1360 2.0942 7.4463 14 7 4.7182 1.8045 7.1643 15 6 3.7781 1.4417 8.0914 16 1 2.7275 1.5555 7.8683 17 6 4.1752 0.9274 9.3181 18 7 3.3521 0.9635 10.3444 19 14 5.8779 0.1841 9.5121 20 1 6.8619 1.2638 9.7789 21 1 5.8737 -0.7732 10.6472 22 1 6.2518 -0.5292 8.2643 23 6 4.4807 1.9706 5.7229 24 6 2.8676 3.9837 -0.0942 25 6 3.2967 5.4251 -0.1905 26 7 2.0318 3.4801 -0.9815 27 7 1.6354 2.2610 -0.9360 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2493 1.1721 1.7573 34 1 4.2890 2.0473 3.0987 35 1 6.5254 3.7180 3.5285 36 1 5.1546 4.3638 4.4624 37 1 6.0493 0.8498 3.8171 38 1 7.6674 2.9458 6.1320 39 1 6.2893 4.0473 6.4666 40 1 6.2351 2.6097 8.4016 41 1 6.7181 1.1726 7.4494 42 1 3.6297 0.6044 11.2017 43 1 3.7217 2.7352 5.5580 44 1 4.1572 1.0244 5.2891 45 1 4.2386 5.4881 -0.7355 46 1 2.5331 5.9971 -0.7176 47 1 3.4289 5.8326 0.8117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569754843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:21 Heat of formation + Delta-G solvation = -27.906827 kcal Electronic energy + Delta-G solvation = -29140.230236 eV Core-core repulsion = 25130.285033 eV Total energy + Delta-G solvation = -4009.945203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.54862 -41.07492 -39.99222 -37.03425 -36.32624 -35.54537 -34.70298 -34.23040 -32.61553 -31.70596 -30.14668 -28.91743 -27.92137 -26.80373 -25.09957 -24.48997 -23.39787 -22.88563 -21.67661 -21.40857 -19.35394 -18.98004 -18.72559 -17.67437 -17.20119 -17.03579 -16.80740 -16.72529 -16.21821 -16.00343 -15.94350 -15.54470 -15.28800 -15.11161 -14.95937 -14.56299 -14.32978 -14.18618 -13.91822 -13.84073 -13.52049 -13.35792 -13.24769 -13.11776 -12.95106 -12.75900 -12.74502 -12.19389 -12.16351 -12.03772 -11.88667 -11.79496 -11.52264 -11.40649 -11.39854 -11.04352 -10.84099 -10.64259 -10.56095 -10.27541 -9.06770 -8.19720 -5.47948 -0.83650 -0.27192 1.30375 1.39355 1.47955 1.54913 1.74030 2.39936 2.41004 2.81041 2.97404 3.06948 3.15330 3.16828 3.24978 3.44726 3.56171 3.63792 3.72991 3.75148 3.97786 4.08388 4.34634 4.35910 4.36368 4.39810 4.55065 4.60487 4.63940 4.67646 4.73596 4.76743 4.83696 4.91092 4.94683 4.98103 5.04621 5.06060 5.13449 5.16254 5.18329 5.31499 5.41191 5.65470 6.08402 6.18627 6.72886 6.75413 6.88654 7.51344 7.53435 8.07175 8.99939 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002998 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.462782 B = 9336.899736 C =10509.744673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.064 4.064 5 C -0.140 4.140 6 C 0.569 3.431 7 O -0.540 6.540 8 N -0.706 5.706 9 C 0.117 3.883 10 C 0.124 3.876 11 O -0.552 6.552 12 C -0.107 4.107 13 C 0.103 3.897 14 N -0.624 5.624 15 C -0.234 4.234 16 H 0.062 0.938 17 C -0.034 4.034 18 N -0.956 5.956 19 Si 0.946 3.054 20 H -0.271 1.271 21 H -0.310 1.310 22 H -0.271 1.271 23 C 0.107 3.893 24 C 0.106 3.894 25 C -0.102 4.102 26 N -0.269 5.269 27 N -0.245 5.245 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.191 0.809 34 H 0.411 0.589 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.388 0.612 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.042 0.958 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 0.856 -22.627 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.094 4.094 5 C -0.154 4.154 6 C 0.355 3.645 7 O -0.419 6.419 8 N -0.359 5.359 9 C -0.007 4.007 10 C 0.082 3.918 11 O -0.360 6.360 12 C -0.146 4.146 13 C -0.021 4.021 14 N -0.351 5.351 15 C -0.363 4.363 16 H 0.080 0.920 17 C -0.229 4.229 18 N -0.603 5.603 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.239 1.239 22 H -0.196 1.196 23 C -0.018 4.018 24 C -0.039 4.039 25 C -0.160 4.160 26 N -0.111 5.111 27 N -0.087 5.087 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.209 0.791 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.238 0.762 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.101 0.899 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.512 2.027 -23.408 23.629 hybrid contribution 0.535 -1.263 1.579 2.092 sum 3.047 0.764 -21.829 22.054 Atomic orbital electron populations 1.21712 0.93985 1.03124 1.01737 1.20653 0.97049 0.87116 1.05870 1.23382 0.94076 0.99692 0.91443 1.22988 0.93206 0.94649 0.98528 1.21044 1.00579 0.95891 0.97867 1.17855 0.80666 0.84906 0.81121 1.90758 1.55136 1.19347 1.76619 1.45718 1.47350 1.19121 1.23745 1.21941 0.94139 0.96495 0.88097 1.22207 0.91387 0.86129 0.92108 1.86600 1.49325 1.45143 1.54910 1.22741 1.01359 0.99196 0.91288 1.22060 0.85280 0.96612 0.98198 1.44766 1.06085 1.80646 1.03613 1.18567 0.88325 1.35218 0.94164 0.91997 1.25621 1.00948 1.00770 0.95533 1.69945 1.39062 1.50090 1.01179 0.85966 0.81549 0.78810 0.76127 1.19676 1.23878 1.19617 1.22260 0.96164 0.99213 0.84165 1.23343 0.91510 0.99416 0.89664 1.20958 1.02257 0.87467 1.05322 1.73047 1.09981 1.06138 1.21910 1.72687 1.17746 0.97683 1.20572 0.90017 0.93463 0.92979 0.88165 0.86839 0.79149 0.75135 0.88883 0.89957 0.76185 0.87942 0.87963 0.93983 0.95948 0.92848 0.93739 0.93584 0.89029 0.89937 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.78 71.98 0.70 -1.06 16 2 C -0.07 -0.68 6.35 29.85 0.19 -0.49 16 3 C 0.06 0.97 6.25 42.62 0.27 1.23 16 4 C -0.06 -0.87 9.29 22.79 0.21 -0.66 16 5 C -0.14 -2.61 5.92 -19.83 -0.12 -2.72 16 6 C 0.57 11.22 7.73 86.87 0.67 11.89 16 7 O -0.54 -13.54 13.50 -3.77 -0.05 -13.59 16 8 N -0.71 -11.23 5.09 -465.70 -2.37 -13.60 16 9 C 0.12 2.23 4.80 86.38 0.41 2.64 16 10 C 0.12 2.97 0.93 -9.60 -0.01 2.96 16 11 O -0.55 -12.45 13.10 -148.98 -1.95 -14.40 16 12 C -0.11 -2.97 6.26 31.98 0.20 -2.77 16 13 C 0.10 4.09 4.68 86.86 0.41 4.50 16 14 N -0.62 -27.70 3.20 -691.96 -2.21 -29.91 16 15 C -0.23 -12.90 10.58 84.03 0.89 -12.01 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 17 C -0.03 -1.95 5.44 84.86 0.46 -1.49 16 18 N -0.96 -59.23 13.97 21.65 0.30 -58.93 16 19 Si 0.95 46.20 24.26 68.60 1.66 47.86 16 20 H -0.27 -12.45 6.48 99.48 0.64 -11.81 16 21 H -0.31 -15.38 7.11 99.48 0.71 -14.68 16 22 H -0.27 -12.87 6.64 99.48 0.66 -12.21 16 23 C 0.11 3.39 5.76 86.73 0.50 3.89 16 24 C 0.11 2.33 6.91 42.92 0.30 2.63 16 25 C -0.10 -1.99 9.05 71.24 0.64 -1.35 16 26 N -0.27 -6.69 11.42 -46.94 -0.54 -7.23 16 27 N -0.25 -5.60 11.04 -47.68 -0.53 -6.13 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.78 7.96 -2.39 -0.02 0.76 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.54 7.92 -2.39 -0.02 0.53 16 33 H 0.19 1.01 6.59 -2.91 -0.02 0.99 16 34 H 0.41 4.54 5.69 -92.71 -0.53 4.01 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.72 8.03 -2.39 -0.02 1.70 16 37 H 0.39 5.20 8.44 -74.05 -0.62 4.58 16 38 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.10 2.54 7.96 -2.38 -0.02 2.52 16 40 H 0.04 1.82 6.66 -2.39 -0.02 1.80 16 41 H 0.02 0.96 5.52 -2.39 -0.01 0.94 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 44 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 45 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.10 2.08 5.81 -2.39 -0.01 2.07 16 Total: -1.00 -76.96 375.37 -0.20 -77.16 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.25 Total: 11.57 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.73 Total: 7.19 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.34 Total: -115.79 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -2.00 Total: -27.99 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.66 Total: 47.86 kcal Total: -76.96 -0.20 -77.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569754843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -76.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds